BAC Information

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BAC

Clone NameB6Ng01-102H02
Chromosome5 (Build37)2 (Build37)
Map Location 18,084,511 - 18,084,576107,618,570 - 107,619,255
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102H02.bB6Ng01-102H02.g
ACCDH911335DH911336
length949686
definitionDH911335|Mus musculus domesticus DNA, BAC clone: B6Ng01-102H02, 5' end.DH911336|Mus musculus domesticus DNA, BAC clone: B6Ng01-102H02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,576)(107,618,570 - 107,619,255)
sequence
gaattctcacctaagggataccgaatgtctgagaagcacctaaatgccga
ataagtgttcaccatccatagtcatcaaggaaatgcaaatcaaaacaatc
ctgagattctacctcacaccagtcagaatggctaagatcaggaactcatg
tgacagcagatgctggcaagaataaggagaaagagaaacactcctccaat
gctggtaggattgcaagctggtacaaccactcaggaaatcagcttggcag
ttcctcagaaaattgtacatagtactaccagaggatcaagcaatagcact
cctgggcatatacccagaagatgctccaacatgtaataaggacacatgct
ccactatgttcatagtagccttatttataatagctagaagctggaaagaa
tccagatgtccctcaacagaggaattgatacagaaagtgtggtactttta
cacaatggagtactactactcagccattaaaaacaatgaattcatgaaat
tcttaggcaaatggaaggaactagaggatatcttcctgaatgatgtaacc
caatcacaaaagaacacacatcatatgccctcattgataagtggatatta
acccagaagctcagaatacccaggatataattcacaaaccacatgaaact
caagaaggaagactgttgggagctattaaggcaacgctattgtccttttc
tctgaattgggcctcccccccccccccccgagaagaaaagggagtcaaaa
gcgggccacctgaagcaccgcttcgagaaagtcagtgcaggatgtcctga
cctcaagatgtaccctgataccaccaagttcctgcttctccatgtagttg
ccaaaggaaaaatttccactgccccatcctgcctgctgagaagtacttcc
tctctttccactgccccatccctcctgctgaggtgcatttcctctgccc
gaattcacttttggcctattatcagttacttgagttggattttcagattg
ctacttcatacccaccttcttttgctagtggattattttctggcttgaac
ttgtgtactggtcttgtgtactgactcacagctgctttgacttcatatgt
gcaccaggcctgttacatccaaaaggtcagtttttccctatagtcaccca
ctgcctctgcctcttatttctattcccattttgcaatgaagcttgactgt
caggaggaaagaatataatacagttctcccatttagaactgcacattcca
caggctagtgttctctgcctttggatgagttgtgacttagtggatcgatc
ataatcaattgaaaacagaaacttttctgatgatagctggagatgagctg
atctattgttatgacaataagtcattgagagttggtgtaataccattttc
atttagcctcatcaaaatagtgatttctccagtagagcttgccgagcccg
aatttttatgaagcaggcattaaaaataacaaaaggtgcttggttaaatt
tgcaggcgatggctccagtctcacaggatggccttgttgggcatcaatgt
gaggagaggcccttggtcctgtgaaggctcgatgcctcagtggaggggaa
tgccagggcagggaggtgggagtgggtggatgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084576
seq2: B6Ng01-102H02.b_369_434 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||| |||||||||||||||||| |||||||||||||||||||||||||
seq2  CTTCTAGCTATTATAAATAAGGCTACTATGAACATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGGA  66
      ||| ||||  ||||||
seq2  CTTATTACATGTTGGA  66

seq1: chr2_107618570_107619255
seq2: B6Ng01-102H02.g_68_753

seq1  GAATTCACTTTTGGCCTATTATCAGTTACTTGAGTTGGATTTTCAGATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTGGCCTATTATCAGTTACTTGAGTTGGATTTTCAGATTG  50

seq1  CTACTTCATACCCACCTTCTTTTGCTAGTGGATTATTTTCTGGCTTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCATACCCACCTTCTTTTGCTAGTGGATTATTTTCTGGCTTGAAC  100

seq1  TTGTGTACTGGTCTTGTGTACTGACTCACAGCTGCTTTGACTTCATATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTACTGGTCTTGTGTACTGACTCACAGCTGCTTTGACTTCATATGT  150

seq1  GCACCAGGCCTGTTACATCCAAAAGGTCAGTTTTTCCCTATAGTCACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGGCCTGTTACATCCAAAAGGTCAGTTTTTCCCTATAGTCACCCA  200

seq1  CTGCCTCTGCCTCTTATTTCTATTCCCATTTTGCAATGAAGCTTGACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCCTCTTATTTCTATTCCCATTTTGCAATGAAGCTTGACTGT  250

seq1  CAGGAGGAAAGAATATAATACAGTTCTCCCATTTAGAACTGCACATTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGAAAGAATATAATACAGTTCTCCCATTTAGAACTGCACATTCCA  300

seq1  CAGGCTAGTGTTCTCTGCCTTTGGATGAGTTGTGACTTAGTGGATCGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAGTGTTCTCTGCCTTTGGATGAGTTGTGACTTAGTGGATCGATC  350

seq1  ATAATCAATTGAAAACAGAAACTTTTCTGATGATAGCTGGAGATGAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAATTGAAAACAGAAACTTTTCTGATGATAGCTGGAGATGAGCTG  400

seq1  ATCTATTGTTATGACAATAAGTCATTGAGAGTTGGTGTAATACCATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTGTTATGACAATAAGTCATTGAGAGTTGGTGTAATACCATTTTC  450

seq1  ATTTAGCCTCATCAAAATAGTGATTTCTCCAGTAGAGCTTGCCGAGCCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCCTCATCAAAATAGTGATTTCTCCAGTAGAGCTTGCCGAGCCCG  500

seq1  AATTTTTATGAAGCAGGCATTAAAAATAACAAAAGGTGCTTGGTTAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATGAAGCAGGCATTAAAAATAACAAAAGGTGCTTGGTTAAATT  550

seq1  TGCAGGCGATGGCTCCAGTCTCACAGGATGGCCTTGTTGGGCATCAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCGATGGCTCCAGTCTCACAGGATGGCCTTGTTGGGCATCAATGT  600

seq1  GAGGAGAGGCCCTTGGTCCTGTGAAGGCTCGATGCCTCAGTGGAGGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGGCCCTTGGTCCTGTGAAGGCTCGATGCCTCAGTGGAGGGGAA  650

seq1  TGCCAGGGCAGGGAGGTGGGAGTGGGTGGATGGGTG  686
      ||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGGCAGGGAGGTGGGAGTGGGTGGATGGGTG  686