BAC Information

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BAC

Clone NameB6Ng01-102H23
Chromosome2 (Build37)14 (Build37)
Map Location 57,248,095 - 57,249,28589,560,948 - 89,561,237
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2
Downstream geneLOC271788, Galnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102H23.bB6Ng01-102H23.g
ACCDH911374DH911375
length1,171910
definitionDH911374|Mus musculus domesticus DNA, BAC clone: B6Ng01-102H23, 5' end.DH911375|Mus musculus domesticus DNA, BAC clone: B6Ng01-102H23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(57,248,095 - 57,249,285)(89,560,948 - 89,561,237)
sequence
gaattctttcagttttcattcaggtgtgaccttccttacagtataatgaa
caaaatgtctaccccaatggattctatgcagcctggtgagcaacacatgt
gtggtatcattggacaagatgtctgccaaatcaccactccttgcttgaaa
gtaccttcggccaccgatggaaggttttcagtacctttggaggttgtttc
ctggaacttctctgcctgatcccaccactcaaatgaacaattattctgat
tcttatcgttgaagattagatttgcttgtttttgaaatttatacaagcac
aagcccaagttcctactttttgtgtatggcttctttcacttaacccggcg
tttgtgagattcactctcactgtgaatggggcgtgcagctctctctcttt
ttttgctaatgttttcttgggattatctgaattctttctaaagcagaagc
tcccgaagccgctttcaagcctggggtggcgatttggcagaggtcttgct
tcctggttttcaaatggtgccactctcgtggaacatatcaggatggcatt
gagcccggcagttgtcgtaatccaactggagcagttgagccccgtgccca
ccgcgtgatcatcttgagtcagactggagcatgcagtcaacctgaacgaa
atgggttcagtcacagagggccagacttcttaattagttctcaccagcaa
ggacattttatgtttccaaaagtcaagtacgaattcttcaagtgacacaa
ttcgggaagacttcataagagggaattaagcccagtctcccactgtcatc
aatagcatctgaagccatactcatttatttctcactgttagtgttcttag
aaggaccaatgtgctataataaaaaagtagcagtgaactttagtgaggtg
tcattgagcaagagttatcgagtgcagcctttcttactaacctttgggta
gtgggtagcactcttttgcgcctttatcccccttattctctgagtcctcc
tttttctatcagagcatataaatgtataaaccaccaatactttatattgg
ttttcagtcaacccattatacccacgtgctgttaaaagtagggagaattc
tgaaagtcagaaatgcactataatgcattttggtttattgattgttagct
cattcaagtaggtaaatattt
gaattctctgtttagctctattccccattttttaatagggttatttggtt
ctctggagtccaacttcttgagttctttgtatatattgaataatagacct
ctatcaaatgtgagattggtaaagatcttttcccaatctgttggttgcca
ttttgtcctatgacagtgtcctttgacttacagaaactttgcaatttcat
gaggtcccattcatcaatttttgatcttagagcatacgctattgctattc
tgttcaagaacttttcccctgtgcccatgtgtttgagacttttccctatg
ttctgttctattagagtcagtgtatctggttttatgtggaggtcttagac
ttagacttgagctttgtacaaggagataagaatgggtcactgcccattct
tctacatgctaaccagcaccatttgttgaaaatgtcttttttccagtgga
tggttttaggtcaaaaatcaagtaaccataggtgtgttatttctgggtct
tccattctattcattgatctaccttcctgtcacttaccaataccatggag
tttttaacacaattgctgtgtaatacagcttgaggtcagggatgctgatt
cccccagaagttcttttattgttgagatagtttttgctacctaggggtct
tttgttattccaaatgactttgagaattgctctttctaactctatgaaga
attgagttgaaattttgatggggattgcattgaatctgcagattgctttc
agcaagatggccatttttactatatttatcctaccaatccatgagcatgg
gagatctttctatcttctgaggttttcttttatttcttcagagatttgaa
gttcttgtcatgcagatctttcacttgtttgattagagtcacaccaagat
atttatatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_57248095_57249285
seq2: B6Ng01-102H23.b_41_1211

seq1  GAATTCTTTCAGTTTTCATTCAGGTGTGACCTTCCTTACAGTATAATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGTTTTCATTCAGGTGTGACCTTCCTTACAGTATAATGAA  50

seq1  CAAAATGTCTACCCCAATGGATTCTATGCAGCCTGGTGAGCAACACATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTCTACCCCAATGGATTCTATGCAGCCTGGTGAGCAACACATGT  100

seq1  GTGGTATCATTGGACAAGATGTCTGCCAAATCACCACTCCTTGCTTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTATCATTGGACAAGATGTCTGCCAAATCACCACTCCTTGCTTGAAA  150

seq1  GTACCTTCGGCCACCGATGGAAGGTTTTCAGTACCTTTGGAGGTTGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTCGGCCACCGATGGAAGGTTTTCAGTACCTTTGGAGGTTGTTTC  200

seq1  CTGGAACTTCTCTGCCTGATCCCACCACTCAAATGAACAATTATTCTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTTCTCTGCCTGATCCCACCACTCAAATGAACAATTATTCTGAT  250

seq1  TCTTATCGTTGAAGATTAGATTTGCTTGTTTTTGAAATTTATACAAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCGTTGAAGATTAGATTTGCTTGTTTTTGAAATTTATACAAGCAC  300

seq1  AAGCCCAAGTTCCTACTTTTTGTGTATGGCTTCTTTCACTTAACCCGGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAAGTTCCTACTTTTTGTGTATGGCTTCTTTCACTTAACCCGGCG  350

seq1  TTTGTGAGATTCACTCTCACTGTGAATGGGGCGTGCAGCTCTCTCTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAGATTCACTCTCACTGTGAATGGGGCGTGCAGCTCTCTCTCTTT  400

seq1  TTTTGCTAATGTTTTCTTGGGATTATCTGAATTCTTTCTAAAGCAGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTAATGTTTTCTTGGGATTATCTGAATTCTTTCTAAAGCAGAAGC  450

seq1  TCCCGAAGCCGCTTTCAAGCCTGGGGTGGCGATTTGGCAGAGGTCTTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAAGCCGCTTTCAAGCCTGGGGTGGCGATTTGGCAGAGGTCTTGCT  500

seq1  TCCTGGTTTTCAAATGGTGCCACTCTCGTGGAACATATCAGGATGGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTTTTCAAATGGTGCCACTCTCGTGGAACATATCAGGATGGCATT  550

seq1  GAGCCCGGCAGTTGTCGTAATCCAACTGGAGCAGTTGAGCCCCGTGCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCGGCAGTTGTCGTAATCCAACTGGAGCAGTTGAGCCCCGTGCCCA  600

seq1  CCGCGTGATCATCTTGAGTCAGACTGGAGCATGCAGTCAACCTGAACGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGTGATCATCTTGAGTCAGACTGGAGCATGCAGTCAACCTGAACGAA  650

seq1  ATGGGTTCAGTCACAGAGGGCCAGACTTCTTAATTAGTTCTCACCAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTCAGTCACAGAGGGCCAGACTTCTTAATTAGTTCTCACCAGCAA  700

seq1  GGACATTTTATGTTTCCAAAAGTCAAGTACGAATTCTTCAAGTGACACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTTTATGTTTCCAAAAGTCAAGTACGAATTCTTCAAGTGACACAA  750

seq1  TTCGGGAAGACTTCATAAGAGGGAATTAAGCCCAGTCTCCCACTGTCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGGAAGACTTCATAAGAGGGAATTAAGCCCAGTCTCCCACTGTCATC  800

seq1  AATAGCATCTGAAGCCATACTCATTTATTTCTCACTGTTAGTGTTCTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCATCTGAAGCCATACTCATTTATTTCTCACTGTTAGTGTTCTTAG  850

seq1  AAGGACCAATGTGCTATAATAAAAAAGTAGCAGTGAACTTTAGTGAGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCAATGTGCTATAATAAAAAAGTAGCAGTGAACTTTAGTGAGGTG  900

seq1  TCATTGAGCAAGAGTTATCGAGTGCAGCCTTTCTTACTAACCTTTGGTAG  950
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  TCATTGAGCAAGAGTTATCGAGTGCAGCCTTTCTTACTAACCTTTGGGTA  950

seq1  GTGGGTAGCACTCTTTTGCGCCTTTATCCCCCCTTATTCTCTGAAGTCCT  1000
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  GTGGGTAGCACTCTTTTGCGCCTTTAT-CCCCCTTATTCTCTG-AGTCCT  998

seq1  CCTTTTTCTATCAAGAAGCATATTAAATGTATAAACCAACCAATACTTTA  1050
      |||||||||||||   |||||| |||||||||||||| ||||||||||||
seq2  CCTTTTTCTATCA--GAGCATA-TAAATGTATAAACC-ACCAATACTTTA  1044

seq1  TATTGGTTTTCAGTCAACCCATTTATACCCACGTGCTGTTTAAAAGTAGG  1100
      ||||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  TATTGGTTTTCAGTCAACCCA-TTATACCCACGTGCTG-TTAAAAGTAGG  1092

seq1  GAGAATTCTGAAAGTCAAGAAATGCACTATAAATGCATTTTTTGTTTTTA  1150
      |||||||||||||||| ||||||||||||| ||||||||||   || || 
seq2  GAGAATTCTGAAAGTC-AGAAATGCACTAT-AATGCATTTTGGTTTATTG  1140

seq1  TTTGTTTTGTTAAGCTTCATTCAATGTAGGGTAAATTATTT  1191
       |||||      ||| |||||||| ||| |||||| |||||
seq2  ATTGTT------AGC-TCATTCAA-GTA-GGTAAA-TATTT  1171

seq1: chr14_89560948_89561237
seq2: B6Ng01-102H23.g_94_591 (reverse)

seq1  AGGTAGATCAATTGGAATAGAATTGAAGACCCATGAATGAACCCACACAC  50
      ||||||||||||  ||||||||| |||||||||     |||   ||||||
seq2  AGGTAGATCAAT--GAATAGAATGGAAGACCCA-----GAAATAACACAC  43

seq1  CTATGGTCACTTGATCTTTGACAAAGGAGCTAAAACCATCCAGTGG----  96
      ||||||| ||||||| ||||||       ||||||||||||| |||    
seq2  CTATGGTTACTTGATTTTTGAC-------CTAAAACCATCCACTGGAAAA  86

seq1  ------TCTTGCAAAGATTATATTGCTGAG--TACAGGGGAAT-GCCAGG  137
            | ||  | | ||  |  || | ||  |  ||  |||| | ||| 
seq2  AAGACATTTTCAACAAATGGTGCTGGTTAGCATGTAGAAGAATGGGCAGT  136

seq1  G--------------CCAGGAAGAAGG----AGTGGGTGGGTTGGGGA--  167
      |              ||  | | || |    |||   |  ||    ||  
seq2  GACCCATTCTTATCTCCTTGTACAAAGCTCAAGT--CTAAGTCTAAGACC  184

seq1  ---GCAT-------GGCAAGGGGAGTCT-ATAG---GGGACTTTTGGGAT  203
          |||       |  |    || ||| ||||    | || |  || | 
seq2  TCCACATAAAACCAGATACACTGACTCTAATAGAACAGAACATAGGGAAA  234

seq1  AG-----------------CATTTGAAATGTAAATGAAGTAAATA-----  231
      ||                 ||   |||| ||   ||||   ||||     
seq2  AGTCTCAAACACATGGGCACAGGGGAAAAGTTCTTGAACAGAATAGCAAT  284

seq1  ---------TCTAA---TAAAAATTGTTAAAT---------TGAAAAAAA  260
               |||||    |||||||| | |||         |||||    
seq2  AGCGTATGCTCTAAGATCAAAAATTGATGAATGGGACCTCATGAAATTGC  334

seq1  AAA------GAAAATCAACTAAC-----CCTATTAAAAAAT---------  290
      |||      | || ||||   ||     | ||  | |||||         
seq2  AAAGTTTCTGTAAGTCAAAGGACACTGTCATAGGACAAAATGGCAACCAA  384

seq1  --------------------------------------------------  290
                                                        
seq2  CAGATTGGGAAAAGATCTTTACCAATCTCACATTTGATAGAGGTCTATTA  434

seq1  --------------------------------------------------  290
                                                        
seq2  TTCAATATATACAAAGAACTCAAGAAGTTGGACTCCAGAGAACCAAATAA  484

seq1  --------------  290
                    
seq2  CCCTATTAAAAAAT  498