BAC Information

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BAC

Clone NameB6Ng01-102J11
Chromosome2 (Build37)
Map Location 172,117,305 - 172,220,947
singlet/doubletdoublet
Overlap gene2010011I20Rik, Aurka, Cstf1, F730031O20Rik
Upstream geneLOC100043744, Cbln4, Mc3r
Downstream gene2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102J11.bB6Ng01-102J11.g
ACCDH911436DH911437
length6741,021
definitionDH911436|Mus musculus domesticus DNA, BAC clone: B6Ng01-102J11, 5' end.DH911437|Mus musculus domesticus DNA, BAC clone: B6Ng01-102J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,220,274 - 172,220,947)(172,117,305 - 172,118,331)
sequence
gaattccccatcatcttgggttacaggcctgtgtagcccatgctggggac
aaaacccgggcttttgtgcctgtgagacaagtgctctgccaacggaacaa
catccccagcccaggagggaggagtgcagggctggctatttattttcacg
aagctgaacagcaacagtgagcagagctgtagcatcagtcgatgtacaga
cagaggccgtatgccggagagacagactgccggagagacagactgcccgg
aactgcggggatgcctttggatgaaagatttagtggggctggctcaacta
ctcacttccccagcgctttgtggggcaagattctcaactcagatatttac
aagtcatctaaacaaggagtcgccacagaccccagccctggatcccacgc
ccaacacttgttactatcacaatgacaagcaacatttaattccggcaagc
agcctcccatttagcaactgtttcatggctcttttgtatctaccattcta
tcacattttgaaagaataggaggggacagaaaagcaacgactgtgagctt
cactttccttgtgatctctcctccttctccccaagcccccgcatacagta
tgggtgtgtgaaacccaaaagttgatgtcacaatgtccttctccatcacc
cacccactttatttgtgtgtgtgt
gaattctttcgagaatcctagagcccaaaggtggggtcagagacggaaag
tgggcttgcgccatggactagctgggtcttggccccgtgcagtcaacaaa
gaataaaaacattctcccggcctcacgtggcaaggactcatgccaggctc
tgaggactccaccagcctggagcccagctgcctttcctcatctctgtcag
gtctacagggaccctaaggggttttccagccccacaccatctttacagct
tctgcctcctgcctgcagtcaaggctaggccaagttccattcttcacccg
caggagcaatcttgagtaaaacatcttagaatgtactgcctgacagtcac
ctgacactctggaaagtcccaggtagagttcaaatgcgtgtcatgcttgc
tagccaatagatttaaaggtcaagatgcttagccaataagcttgaactgt
aaccttgctgatgtaacctgtgcccctaaaaagtataaaaactgcttgta
gtagccattcggggtcgccttctcatcactcaccttgaaggactgattga
ggttgaccctgatgcgctggaaaataaacctcttgcttttgcatcaatct
tcgtctcggtgtctcactcaggggcatcgtgaagtaagtgccactgactg
agggttggggtcttacagcctcacaagggtctgaggttggcaacaccatt
atgtgcccattttgcagatgagaaagaaccaaaggttagcaaatacaaag
aattatacgccgccccccccccgactctgtgccctgaaggggtggagtat
gaactaaaacctggtgtttatatatccctacttccccctgctatccaaac
tggactccttctagtgggtccccaaatgtccagctacctcatcatacttc
ccctgccccatcccccacaatggcctaccagctctgacctcatcctgtct
cagtgacaggcttcaaagcaggtctatagaccatgagatgctagatcagc
ccttgggggccatgtaaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_172220274_172220947
seq2: B6Ng01-102J11.b_44_717 (reverse)

seq1  ACACACACACAAATAAAGTGGGTGGGTGATGGAGAAGGACATTGTGACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAAATAAAGTGGGTGGGTGATGGAGAAGGACATTGTGACAT  50

seq1  CAACTTTTGGGTTTCACACACCCATACTGTATGCGGGGGCTTGGGGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTTGGGTTTCACACACCCATACTGTATGCGGGGGCTTGGGGAGAA  100

seq1  GGAGGAGAGATCACAAGGAAAGTGAAGCTCACAGTCGTTGCTTTTCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGAGATCACAAGGAAAGTGAAGCTCACAGTCGTTGCTTTTCTGTC  150

seq1  CCCTCCTATTCTTTCAAAATGTGATAGAATGGTAGATACAAAAGAGCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTATTCTTTCAAAATGTGATAGAATGGTAGATACAAAAGAGCCAT  200

seq1  GAAACAGTTGCTAAATGGGAGGCTGCTTGCCGGAATTAAATGTTGCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGTTGCTAAATGGGAGGCTGCTTGCCGGAATTAAATGTTGCTTGT  250

seq1  CATTGTGATAGTAACAAGTGTTGGGCGTGGGATCCAGGGCTGGGGTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGATAGTAACAAGTGTTGGGCGTGGGATCCAGGGCTGGGGTCTGT  300

seq1  GGCGACTCCTTGTTTAGATGACTTGTAAATATCTGAGTTGAGAATCTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGACTCCTTGTTTAGATGACTTGTAAATATCTGAGTTGAGAATCTTGC  350

seq1  CCCACAAAGCGCTGGGGAAGTGAGTAGTTGAGCCAGCCCCACTAAATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAAGCGCTGGGGAAGTGAGTAGTTGAGCCAGCCCCACTAAATCTT  400

seq1  TCATCCAAAGGCATCCCCGCAGTTCCGGGCAGTCTGTCTCTCCGGCAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAAAGGCATCCCCGCAGTTCCGGGCAGTCTGTCTCTCCGGCAGTC  450

seq1  TGTCTCTCCGGCATACGGCCTCTGTCTGTACATCGACTGATGCTACAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCCGGCATACGGCCTCTGTCTGTACATCGACTGATGCTACAGCT  500

seq1  CTGCTCACTGTTGCTGTTCAGCTTCGTGAAAATAAATAGCCAGCCCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCACTGTTGCTGTTCAGCTTCGTGAAAATAAATAGCCAGCCCTGCA  550

seq1  CTCCTCCCTCCTGGGCTGGGGATGTTGTTCCGTTGGCAGAGCACTTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCTCCTGGGCTGGGGATGTTGTTCCGTTGGCAGAGCACTTGTCT  600

seq1  CACAGGCACAAAAGCCCGGGTTTTGTCCCCAGCATGGGCTACACAGGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCACAAAAGCCCGGGTTTTGTCCCCAGCATGGGCTACACAGGCCT  650

seq1  GTAACCCAAGATGATGGGGAATTC  674
      ||||||||||||||||||||||||
seq2  GTAACCCAAGATGATGGGGAATTC  674

seq1: chr2_172117305_172118331
seq2: B6Ng01-102J11.g_71_1091

seq1  GAATTCTTTCGAGAATCCTAGAGCCCAAAGGTGGGGTCAGAGACGGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCGAGAATCCTAGAGCCCAAAGGTGGGGTCAGAGACGGAAAG  50

seq1  TGGGCTTGCGCCATGGACTAGCTGGGTCTTGGCCCCGTGCAGTCAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTGCGCCATGGACTAGCTGGGTCTTGGCCCCGTGCAGTCAACAAA  100

seq1  GAATAAAAACATTCTCCCGGCCTCACGTGGCAAGGACTCATGCCAGGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAAACATTCTCCCGGCCTCACGTGGCAAGGACTCATGCCAGGCTC  150

seq1  TGAGGACTCCACCAGCCTGGAGCCCAGCTGCCTTTCCTCATCTCTGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACTCCACCAGCCTGGAGCCCAGCTGCCTTTCCTCATCTCTGTCAG  200

seq1  GTCTACAGGGACCCTAAGGGGTTTTCCAGCCCCACACCATCTTTACAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGGGACCCTAAGGGGTTTTCCAGCCCCACACCATCTTTACAGCT  250

seq1  TCTGCCTCCTGCCTGCAGTCAAGGCTAGGCCAAGTTCCATTCTTCACCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCTGCCTGCAGTCAAGGCTAGGCCAAGTTCCATTCTTCACCCG  300

seq1  CAGGAGCAATCTTGAGTAAAACATCTTAGAATGTACTGCCTGACAGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCAATCTTGAGTAAAACATCTTAGAATGTACTGCCTGACAGTCAC  350

seq1  CTGACACTCTGGAAAGTCCCAGGTAGAGTTCAAATGCGTGTCATGCTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACTCTGGAAAGTCCCAGGTAGAGTTCAAATGCGTGTCATGCTTGC  400

seq1  TAGCCAATAGATTTAAAGGTCAAGATGCTTAGCCAATAAGCTTGAACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAATAGATTTAAAGGTCAAGATGCTTAGCCAATAAGCTTGAACTGT  450

seq1  AACCTTGCTGATGTAACCTGTGCCCCTAAAAAGTATAAAAACTGCTTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGCTGATGTAACCTGTGCCCCTAAAAAGTATAAAAACTGCTTGTA  500

seq1  GTAGCCATTCGGGGTCGCCTTCTCATCACTCACCTTGAAGGACTGATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCATTCGGGGTCGCCTTCTCATCACTCACCTTGAAGGACTGATTGA  550

seq1  GGTTGACCCTGATGCGCTGGAAAATAAACCTCTTGCTTTTGCATCAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGACCCTGATGCGCTGGAAAATAAACCTCTTGCTTTTGCATCAATCT  600

seq1  TCGTCTCGGTGTCTCACTCAGGGGCATCGTGAAGTAAGTGCCACTGACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTCGGTGTCTCACTCAGGGGCATCGTGAAGTAAGTGCCACTGACTG  650

seq1  AGGGTTGGGGTCTTACAGCCTCACAAGGGTCTGAGGTTGGCAACACCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGGGGTCTTACAGCCTCACAAGGGTCTGAGGTTGGCAACACCATT  700

seq1  ATGTGCCCATTTTGCAGATGAGAAAGAACC-AAGGTTAGCAAATACAAAG  749
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGTGCCCATTTTGCAGATGAGAAAGAACCAAAGGTTAGCAAATACAAAG  750

seq1  AATTATACGCCGCCCCCCCCCCGACTCTGTGCCCTGAAGGGGTGGAGTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATACGCCGCCCCCCCCCCGACTCTGTGCCCTGAAGGGGTGGAGTAT  800

seq1  GAACTAAAACCTGGTGTTTATATATCCCTACTTCCCCCTGCTATCCAAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAAACCTGGTGTTTATATATCCCTACTTCCCCCTGCTATCCAAAC  850

seq1  TGGACTCCTTCTAGTGGGTCCCCAAATGTCCAGCTACCTCATCATACTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGGACTCCTTCTAGTGGGTCCCCAAATGTCCAGCTACCTCATCATACTT-  899

seq1  CCCCTGCCCCATCCCCCACAATGGCCTACCCAGCTCTGACCTCATCCTGT  949
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCCCTGCCCCATCCCCCACAATGGCCTA-CCAGCTCTGACCTCATCCTGT  948

seq1  CTCCAGTGACAGGCTTCAAAGCAGGGTCTATAGACCATGAAGATGCTAGG  999
      || |||||||||||||||||||| ||||||||||||||| |||||||| |
seq2  CT-CAGTGACAGGCTTCAAAGCA-GGTCTATAGACCATG-AGATGCTA-G  994

seq1  ATCAGCCCTTGGGGGCCATGTTAAAGGA  1027
      |||||||||||||||||||| |||||||
seq2  ATCAGCCCTTGGGGGCCATG-TAAAGGA  1021