BAC Information

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BAC

Clone NameB6Ng01-102M08
Chromosome2 (Build37)
Map Location 122,674,912 - 122,811,436
singlet/doubletdoublet
Overlap genenone
Upstream geneCasc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102M08.bB6Ng01-102M08.g
ACCDH911567DH911568
length1,177376
definitionDH911567|Mus musculus domesticus DNA, BAC clone: B6Ng01-102M08, 5' end.DH911568|Mus musculus domesticus DNA, BAC clone: B6Ng01-102M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,810,834 - 122,811,436)(122,674,912 - 122,675,384)
sequence
gaattcctaaattagtcaaataatttcaagcccgctatagaataatagct
acaaacagagttctgtaaactttcatgggccatgggctaattgtaagaga
aaaagaaagcaggcttggaaaaaaattatgatcagtgaaaacattccttc
tgttttagatgtaagaccattatcttgtaactaaaggtaataaattggga
atggacaatttcttgtaggtgtaaggacaaaaagtaaaaaattcactagt
ttatctatacaaaacttcaaaactaataagacacaaggcacagatgattt
gtctcttgacaaaaccatgctaacttataacataaaaattatggctttaa
gcttataatgaacttatggggggggagactagtaacagataatgactatt
tagtcagatactagtctttatggaaagacatgtaaacaattctgctgtta
ttacttaagtcttatcgatttataagatgaattattgccttaaacttgct
atgaacttattggaatataaaagtatttagaaaatcatgtaatcaattat
cctgctgcaaaggttctacctagtagttgcatgatgtaatttttagagac
agtataaatattgagaaaggcaataaagactgttggagcttctttttttc
tgcttcatctgaggtgagtgttttttctgtgtgtgtgagtacaattagcc
catgacccatgaaaatatggggttttttccgaatcccctgctgctaacag
ccagagctaattacttgaagccaagactttgggccttagaataacaaaga
gttaaagggaaaaaatgccaatagtaagcaactgtaaccctcagaaattg
taatatttgccccagcaacagaggacatcacccagtctacttaggtgctg
ggctagacactggcatatacataaatgagaaatgcctggggagttggtat
gaagcaagtcctagcactcccgaaagaaatgcagaaaattcaaagaaatc
aaacagaaaaaaaactcactatcagttaaagttcaaatttgtcagagaag
agagagttcgagctgctcgcttcttttaggagagctttggcctcttagtc
aggacttccttttggatcagtcagatgaaaaatcaatttaggaatctgga
tatagaattctgactgtttggagctgc
aaaatctaacctggcctatgcctgttggaacaacctgtcagaaggaaagt
gactccaggtgagtcctgaggattctaaacaatacaggttattaaccctg
cttttgcccacccacccaaactagaatgtaagatcctattgctgaagata
ccgcatttgattatatgacattttaaaaagaagaaaaaaagaggagagag
agatagagatggatagatgatagaaatataaacacacacacacacacaca
cacacacacacacacagacaaacagacacacacacagacacagacacaga
cacacacacacacacacacagagagagagagagagagagagagagagaga
gagagataatacacagagagaacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_122810834_122811436
seq2: B6Ng01-102M08.b_663_1221 (reverse)

seq1  GCAGCTCCAAACAGTCAGGGAATACTAGTATTTCTAGTATCTCTAAATAT  50
      |||||||||||||||||  |||| |   ||| || || ||  ||||  ||
seq2  GCAGCTCCAAACAGTCA--GAATTC---TATATCCAG-ATTCCTAA--AT  42

seq1  TGATTTTTTTTCTCATCTTGAACTTGATCCAAAAAGAGAAGTCCTGACTA  100
      |||||||     ||||| |||   ||||||||||   |||||||||||||
seq2  TGATTTT-----TCATC-TGA--CTGATCCAAAA--GGAAGTCCTGACTA  82

seq1  AGAGGCCCAAAGGGCCCTCTTCTTAAAAGAAGGCGAGCAGCTCTGTACTC  150
      ||||| ||||||    ||| || |||||||| ||||||||||| | ||||
seq2  AGAGG-CCAAAG----CTC-TCCTAAAAGAA-GCGAGCAGCTC-GAACTC  124

seq1  TCTTTCTTCTCTGGAACATATTTTGAACCTTTAACCCTGAATAGTGAGTT  200
      ||  |||||||||  ||| | |||||| ||||||  ||| ||||||||||
seq2  TC--TCTTCTCTG--ACA-AATTTGAA-CTTTAA--CTG-ATAGTGAGTT  165

seq1  TTTTTTTTCTTGTTTGGATTTTCTTTGAATTTTTCTGCAATTTCTTTCGG  250
      ||||||    ||||||   |||||||||| |||||||| |||||||||||
seq2  TTTTTT---CTGTTTG--ATTTCTTTGAA-TTTTCTGC-ATTTCTTTCGG  208

seq1  GAGTTGCTAGGACTTGCTTCATACCAACTCCCCAGGCATTTTCTCATTTA  300
      ||| |||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAG-TGCTAGGACTTGCTTCATACCAACTCCCCAGGCA-TTTCTCATTTA  256

seq1  TGTATATGCCAGTGTCTAGCCCAGCACCTAAGTAGACTGGGTGATGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGCCAGTGTCTAGCCCAGCACCTAAGTAGACTGGGTGATGTCCT  306

seq1  CTGTTGCTGGGGCAAATATTACAATTTCTGAGGGTTACAGTTGCTTACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCTGGGGCAAATATTACAATTTCTGAGGGTTACAGTTGCTTACTA  356

seq1  TTGGCATTTTTTCCCTTTAACTCTTTGTTATTCTAAGGCCCAAAGTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATTTTTTCCCTTTAACTCTTTGTTATTCTAAGGCCCAAAGTCTTG  406

seq1  GCTTCAAGTAATTAGCTCTGGCTGTTAGCAGCAGGGGATTCGGAAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAGTAATTAGCTCTGGCTGTTAGCAGCAGGGGATTCGGAAAAAAC  456

seq1  CCCATATTTTCATGGGTCATGGGCTAATTGTACTCACACACACAGAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATTTTCATGGGTCATGGGCTAATTGTACTCACACACACAGAAAAA  506

seq1  ACACTCACCTCAGATGAAGCAGAAAAAAAGAAGCTCCAACAGTCTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACCTCAGATGAAGCAGAAAAAAAGAAGCTCCAACAGTCTTTATT  556

seq1  GCC  603
      |||
seq2  GCC  559

seq1: chr2_122674912_122675384
seq2: B6Ng01-102M08.g_69_450

seq1  GAATTCAAAATCTAACCTGGCCTATGCCTGTTGGAACAACCTGTCAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATCTAACCTGGCCTATGCCTGTTGGAACAACCTGTCAGAAG  50

seq1  GAAAGTGACTCCAGGTGAGTCCTGAGGATTCTAAACAATACAGGTTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGACTCCAGGTGAGTCCTGAGGATTCTAAACAATACAGGTTATTA  100

seq1  ACCCTGCTTTTGCCCACCCACCCAAACTAGAATGTAAGATCCTATTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCTTTTGCCCACCCACCCAAACTAGAATGTAAGATCCTATTGCTG  150

seq1  AAGATACCGCATTTGATTATATGACATTTTAAAAAGAAGAAAAAAAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACCGCATTTGATTATATGACATTTTAAAAAGAAGAAAAAAAGAGG  200

seq1  AGAGAGAGATAGAGATGGATAGATGATAGAAATATAAACACACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGATAGAGATGGATAGATGATAGAAATATAAACACACACACACA  250

seq1  CACACACACACACACACACACAGACAAACAGACACACACACAGACACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACAGACAAACAGACACACACACAGACACAGA  300

seq1  CACAGACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGA  350

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGTGTGTGTGT  400
      |||||||||||| | | | | ||||||| | | |                
seq2  GAGAGAGAGAGATA-ATACACAGAGAGA-ACACA----------------  382

seq1  GTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  450
                                                        
seq2  --------------------------------------------------  382

seq1  GAGAGAGAGAGAGAGAGAACACA  473
                             
seq2  -----------------------  382