BAC Information

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BAC

Clone NameB6Ng01-102O09
Chromosome2 (Build37)
Map Location 94,625,671 - 94,626,883
singlet/doubletsinglet
Overlap genenone
Upstream geneExt2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3, Hsd17b12, E530001K10Rik, Ttc17, Itpa-ps1, Api5, LOC100043259
Downstream geneLOC100042843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102O09.bB6Ng01-102O09.g
ACCDH911655DH911656
length1,2351,186
definitionDH911655|Mus musculus domesticus DNA, BAC clone: B6Ng01-102O09, 5' end.DH911656|Mus musculus domesticus DNA, BAC clone: B6Ng01-102O09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatattattgttaacctaaggggctgctaaccacttcagcacctt
aggtcctttctctagttccttcattggggaccctgtgctcaggccagtgg
tagtctataagcatctatcactgtatttgtcaggcactagtagagtctct
caggagacagctatatcaggcttctgtcagcaagcacttgttggcatcca
caaaagtgtctgggtttggtgattgtatatgcagtctctggatggtcatt
ccttcagtctctgctccacactttgtctctgtaactccttccatggatat
tttgttcctccttctaagaaggttcaaagtgttcactctttggtcttcct
tcttcttgaatttcatgtggtttgtgaacacatgttgggtgttctgagtt
tctgagctaatatccacttatcagcgagtgcatatcatatgtgttctttt
gtgattgtgttacctcactcaggatagtattttctagttccatccatttg
cctaagaatttcatgaattcgttgtttctaatatctgagtaatacttcat
tgtataaatgtactacattttctgtatccattcctctgttgagggacatg
tggtttttttccagctcctggctgttataaataaggctgccatcgtgtgt
gtccctattacatgtgtaaggagcatgtgcccttattacatgttggagtg
ccttctgggtacatgcccagactaccatctattttcactggccctaccct
atccacatagttaacttggggattttaagttttttgttttttgttttttg
tttttttaaatgaaatctccactctatattcattgtcatttagtactgag
gatgggacaccaggcttaacctacactgagtgtcctaccactgatccaca
tcccaactgcccatgatttgagcatttatttacatcttagaaatgaccat
caccacgtctctgatgtatcaactgccctgttcttcagaaccaaactcaa
tatcctgacatttcaatattctgatgccctatgcttggaacctctgtcaa
ggggctgtttcttagaaaatatctagttcttccattttataaggtaatta
attgtaacaaatatgggatgctaaaggtattcttaacatgctaaaatctt
tttaatcaagatttaatatcctccttacctgggcatgctccccaaggaca
aaatcctacaagatataactactcgacagcacgtg
gaattcttactgaggagtgactgctcctttgctgcaagcagatatgaacc
tgatatagaagagataaatgacaactcgagattaggggagaccttgagaa
ggggctaaggtccttgattgtttatcttgaagatgggcatatttgcagta
taaccttcctagactgactgtgggcaactcagtggggtactgattgttca
gcaattaccataaccacttatgtcggggcaatgtaatcagcatcagacca
aaagttcgccaccattactcgtatctgagaaccgaagtgtcttttgtgat
acatgtatgtacaaccttaagctatgtggttctgcttagttacatgctac
ctgcttagcccactaggctaagcagagtattccattcctttggagaaagt
tgggtcaggatcagtcatgactcaagttcatcttctgagcactagctgtg
gaagcctaggtgaaaccacaggaggggagcattcttttggcctgacactg
tttatctgagaaaataatggcctagaacttttggcttgtccttgctttat
aataatccaacatgagagaaaacagaattgggagagaggttcctgctggc
atcatgtgagttctaggcatgaccaggcaagaaaatgtccaattttcttt
tcagaggagaccacagattccctctctgcttaagtcaacatgtgttgagt
atttgccatagtggatgctaaggtgtgttcataggaaagttcaggtaaac
ttatttgaagcagacatggatctttctaatggcatctgtatgcagatgcc
ctggcaaatgccagctggtgttttctgtggactgagggcttcttgagggg
tcagttggaaatgagggagttaaagaaaactggactctcagggctctcta
atatcagcttttatttttcttagaccattaagaatgctttttggcagtga
aatcacaaaagtgaaacagcaggttttcttaaagcacagtagtctgagtt
ccattattcactgcctgaccacccactgtcattcggaaatgcttttttat
taacatgtagcaccctagacttcttgagtgtcaggcctgaagtattcatg
agaaagcaaaaaaattgaaagcattaggaaaaagcttcttgtccacacat
atacagcctatttaggtactgccatggttggcatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_94625671_94626883
seq2: B6Ng01-102O09.g_71_1256

seq1  GAATTCTTACTGAGGAGTGACTGCTCCTTTGCTGCAAGCAGATATGAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTGAGGAGTGACTGCTCCTTTGCTGCAAGCAGATATGAACC  50

seq1  TGATATAGAAGAGATAAATGACAACTCGAGATTAGGGGAGACCTTGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAGAAGAGATAAATGACAACTCGAGATTAGGGGAGACCTTGAGAA  100

seq1  GGGGCTAAGGTCCTTGATTGTTTATCTTGAAGATGGGCATATTTGCAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTAAGGTCCTTGATTGTTTATCTTGAAGATGGGCATATTTGCAGTA  150

seq1  TAACCTTCCTAGACTGACTGTGGGCAACTCAGTGGGGTACTGATTGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTCCTAGACTGACTGTGGGCAACTCAGTGGGGTACTGATTGTTCA  200

seq1  GCAATTACCATAACCACTTATGTCGGGGCAATGTAATCAGCATCAGACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTACCATAACCACTTATGTCGGGGCAATGTAATCAGCATCAGACCA  250

seq1  AAAGTTCGCCACCATTACTCGTATCTGAGAACCGAAGTGTCTTTTGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCGCCACCATTACTCGTATCTGAGAACCGAAGTGTCTTTTGTGAT  300

seq1  ACATGTATGTACAACCTTAAGCTATGTGGTTCTGCTTAGTTACATGCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATGTACAACCTTAAGCTATGTGGTTCTGCTTAGTTACATGCTAC  350

seq1  CTGCTTAGCCCACTAGGCTAAGCAGAGTATTCCATTCCTTTGGAGAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTAGCCCACTAGGCTAAGCAGAGTATTCCATTCCTTTGGAGAAAGT  400

seq1  TGGGTCAGGATCAGTCATGACTCAAGTTCATCTTCTGAGCACTAGCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCAGGATCAGTCATGACTCAAGTTCATCTTCTGAGCACTAGCTGTG  450

seq1  GAAGCCTAGGTGAAACCACAGGAGGGGAGCATTCTTTTGGCCTGACACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTAGGTGAAACCACAGGAGGGGAGCATTCTTTTGGCCTGACACTG  500

seq1  TTTATCTGAGAAAATAATGGCCTAGAACTTTTGGCTTGTCCTTGCTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTGAGAAAATAATGGCCTAGAACTTTTGGCTTGTCCTTGCTTTAT  550

seq1  AATAATCCAACATGAGAGAAAACAGAATTGGGAGAGAGGTTCCTGCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCCAACATGAGAGAAAACAGAATTGGGAGAGAGGTTCCTGCTGGC  600

seq1  ATCATGTGAGTTCTAGGCATGACCAGGCAAGAAAATGTCCAATTTTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTGAGTTCTAGGCATGACCAGGCAAGAAAATGTCCAATTTTCTTT  650

seq1  TCAGAGGAGACCACAGATTCCCTCTCTGCTTAAGTCAACATGTGTTGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGAGACCACAGATTCCCTCTCTGCTTAAGTCAACATGTGTTGAGT  700

seq1  ATTTGCCATAGTGGATGCTAAGGTGTGTTCATAGGAAAGTTCAGGTAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCATAGTGGATGCTAAGGTGTGTTCATAGGAAAGTTCAGGTAAAC  750

seq1  TTATTTGAAGCAGACATGGATCTTTCTAATGGCATCTGTATGCAGATGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGAAGCAGACATGGATCTTTCTAATGGCATCTGTATGCAGATGCC  800

seq1  CTGGCAAATGCCAGCTGGTGTTTTCTGTGGACTGAGGGCTTCTTGAGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAATGCCAGCTGGTGTTTTCTGTGGACTGAGGGCTTCTTGAGGGG  850

seq1  TCAGTTGGAAATGAGGGAGTTAAAGAAAACTGGACTCTCAGGGCTCTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGGAAATGAGGGAGTTAAAGAAAACTGGACTCTCAGGGCTCTCTA  900

seq1  ATATCAGCTTTTATTTTTCTTAGACCATTAAGAATGCTTTTTGGCAGTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGCTTTTATTTTTCTTAGACCATTAAGAATGCTTTTTGGCAGTGA  950

seq1  AATCACAAAAGTGGAAACAGCAGGGTTTTCTTAAAGCACAGTAGTCTGAG  1000
      |||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  AATCACAAAAGT-GAAACAGCA-GGTTTTCTTAAAGCACAGTAGTCTGAG  998

seq1  GTTTCCAATTAATTCACTGCCTGACCACCCACTGTCCATTCGGAAATGC-  1049
        |||||  | |||||||||||||||||||||||| ||||||||||||| 
seq2  --TTCCA--TTATTCACTGCCTGACCACCCACTGT-CATTCGGAAATGCT  1043

seq1  TTTTTATTAACATGTAGCACCCTAGGACTTCTTGAAGGTGTCAGGGCTTG  1099
      |||||||||||||||||||||||| ||||||||||  |||||||| ||  
seq2  TTTTTATTAACATGTAGCACCCTA-GACTTCTTGA--GTGTCAGGCCT--  1088

seq1  AAAGTAATTCATGAGAAAGGAAAAAAAAATTGAAAAGCAATTAGGAGAAA  1149
       |||| |||||||||||||   |||||||||| ||||| ||||||| |||
seq2  GAAGT-ATTCATGAGAAAG--CAAAAAAATTG-AAAGC-ATTAGGA-AAA  1132

seq1  AGCTTCATGTCACACACACACATACAAGCTTAATTTAAGGTACCTGCACA  1199
      |||||| ||||   |||||| |||| ||| ||  || ||||| |||| ||
seq2  AGCTTCTTGTC---CACACATATAC-AGCCTA--TTTAGGTA-CTGC-CA  1174

seq1  GTGGGTTGGCATGG  1213
         |||||||||||
seq2  --TGGTTGGCATGG  1186