BAC Information

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BAC

Clone NameB6Ng01-102O12
Chromosome2 (Build37)
Map Location 73,549,264 - 73,712,338
singlet/doubletdoublet
Overlap geneAtf2
Upstream gene6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1
Downstream geneAtp5g3, LOC667729, LOC100040172, Lnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102O12.bB6Ng01-102O12.g
ACCDH911661DH911662
length1,122809
definitionDH911661|Mus musculus domesticus DNA, BAC clone: B6Ng01-102O12, 5' end.DH911662|Mus musculus domesticus DNA, BAC clone: B6Ng01-102O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,711,203 - 73,712,338)(73,549,264 - 73,550,122)
sequence
gaattctgctgagaacctgattacaggtcaattttctttatttttttttt
taattaaaagatttctaagtagaacttttgaagtacagagaaaaagaatg
agaatttctttttttgttttgttttgtaacaaggtatttctgtgtaatcc
agggatggttacaatcctcctgcctcagcctccctaagtggtgattttag
atacataccactaagcctggtttttcttttcagacttcaaaggtaggaaa
aaaattgctgttttaatgactgctgactaactgtgccctaggggctaaat
taaatacttcttccttcttaactctttgatggaactggatggattactac
atctaattaattcatctatgtgagtttttatatttcaaaagtaccttatc
attataaagattcttgtttttttattaagacatgttgatttcatttggtt
gagtgctttcatttgcaaaaagcagtgcatttcaagaagtgtttcaaggc
tgtttctaacagtataaaaccgtttttgtttttcagtgtctttgccatga
aacagaggacatgataaactgtttaccttaatgaaattcaagttgcatgt
gaattctgccaggtaagtacatgatataataatattttgcaccatgtttc
atattataggttatgaaacttatttttcataaattgtatttactagatta
ctatttggattcttcttaaatctgaagcctcttactagttttcagtcgat
acttgtttctaaattatcaagttaagagcattaaaataactggtgtaata
gcacaggtctgtaatcccattacatagataggatcaaggtctgtgctaga
taccaataccctgtctcaaaaaaataaaaaataaaaaagagccagtcatc
taaatacatgttttatggttttaatgttttctaaaacgagttcttgataa
aagaagtgagagtgttcaaatggcaactcttaaaaatgccatatacttgt
ctggagagaggctcagcagttaagaagcactgactgttcttttagagttc
tgagtttaattcccagaacaaatggtggctccacatctgtatggggtaca
atgccctcttgatgtgtctgaa
gaattcaggtcatcaggcttggccacaggtgcctttatcctctgagccat
cttggccttatttattttttatgtgcagaggacatatcactgaattaaaa
ccaaaattatcctattttgaaaatacattgccagggctactcagagaaag
cctctctcaaaaaaaaacaaaaagaaagaaagaaagaaagaaagaaagga
aggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagaaag
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa
agaaagaaagaaaaaaagaaagaaaggacattgtaaggattagaaacaca
caataatactggttttgttgttgtccgtcttttaagtgataagaacaaca
gaaaataaaggagtagtaagtggtctaaaggcaataagaggagactaata
tgttagctataagttggtggtcagaaaaaccattctgagatgatatttaa
gtcggttcctgaacaaaacctagctcagatcacagcatggaagcctttcc
tatgagatatctagttcgaggaatccgctattgctatgttaattacatta
agatcattactctcacataagtagatgatctactctgacttgtaagaatt
atcattccagttaacttgttcatggtagttaattgatgaacatatatatt
atataattaatatctgtgtgtatatcacttatacatcatgtactgatatg
tgtttattgtgtatgactacataattacatgcactactcacagacttaat
ctgtattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_73711203_73712338
seq2: B6Ng01-102O12.b_48_1169 (reverse)

seq1  TTCAGACACATCAGAAGAGGGCATTGTACCCCCATTACAGATGGTTGTGA  50
      ||||||||||||  ||||||||||||||||||   ||||||||  || ||
seq2  TTCAGACACATC--AAGAGGGCATTGTACCCC--ATACAGATG--TG-GA  43

seq1  GCCACCATTTGGTTTCTGGGAATTAAACTCAGGACCTCTAAAAGAACAGT  100
      |||||||||||  |||||||||||||||||| || |||||||||||||||
seq2  GCCACCATTTG--TTCTGGGAATTAAACTCA-GAACTCTAAAAGAACAGT  90

seq1  CAGTGC-TCTTAACTGCTGAGCCCTCTCTCCAGACCAAGTATATGGCATT  149
      |||||| |||||||||||||| |||||||||||| ||||||||||||| |
seq2  CAGTGCTTCTTAACTGCTGAG-CCTCTCTCCAGA-CAAGTATATGGCA-T  137

seq1  TTTTAAGAGTTGCCATTTGAACACTTCCTCACTTCTTTTATCAAGAACTC  199
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  TTTTAAGAGTTGCCATTTGAACACT--CTCACTTCTTTTATCAAGAACTC  185

seq1  GTTTTAGAAAACATTAAAACCATAAAACATGTATTTAGATGACTGGCTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGAAAACATTAAAACCATAAAACATGTATTTAGATGACTGGCTCT  235

seq1  TTTTTATTTTTTATTTTTTTGAGACAGGGTATTGGTATCTAGCACAGACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTTTATTTTTTTGAGACAGGGTATTGGTATCTAGCACAGACC  285

seq1  TTGATCCTATCTATGTAATGGGATTACAGACCTGTGCTATTACACCAGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCTATCTATGTAATGGGATTACAGACCTGTGCTATTACACCAGTT  335

seq1  ATTTTAATGCTCTTAACTTGATAATTTAGAAACAAGTATCGACTGAAAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATGCTCTTAACTTGATAATTTAGAAACAAGTATCGACTGAAAAC  385

seq1  TAGTAAGAGGCTTCAGATTTAAGAAGAATCCAAATAGTAATCTAGTAAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGAGGCTTCAGATTTAAGAAGAATCCAAATAGTAATCTAGTAAAT  435

seq1  ACAATTTATGAAAAATAAGTTTCATAACCTATAATATGAAACATGGTGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTATGAAAAATAAGTTTCATAACCTATAATATGAAACATGGTGCA  485

seq1  AAATATTATTATATCATGTACTTACCTGGCAGAATTCACATGCAACTTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTATTATATCATGTACTTACCTGGCAGAATTCACATGCAACTTGA  535

seq1  ATTTCATTAAGGTAAACAGTTTATCATGTCCTCTGTTTCATGGCAAAGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTAAGGTAAACAGTTTATCATGTCCTCTGTTTCATGGCAAAGAC  585

seq1  ACTGAAAAACAAAAACGGTTTTATACTGTTAGAAACAGCCTTGAAACACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAACAAAAACGGTTTTATACTGTTAGAAACAGCCTTGAAACACT  635

seq1  TCTTGAAATGCACTGCTTTTTGCAAATGAAAGCACTCAACCAAATGAAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAATGCACTGCTTTTTGCAAATGAAAGCACTCAACCAAATGAAAT  685

seq1  CAACATGTCTTAATAAAAAAACAAGAATCTTTATAATGATAAGGTACTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGTCTTAATAAAAAAACAAGAATCTTTATAATGATAAGGTACTTT  735

seq1  TGAAATATAAAAACTCACATAGATGAATTAATTAGATGTAGTAATCCATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATAAAAACTCACATAGATGAATTAATTAGATGTAGTAATCCATC  785

seq1  CAGTTCCATCAAAGAGTTAAGAAGGAAGAAGTATTTAATTTAGCCCCTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCATCAAAGAGTTAAGAAGGAAGAAGTATTTAATTTAGCCCCTAG  835

seq1  GGCACAGTTAGTCAGCAGTCATTAAAACAGCAATTTTTTTCCTACCTTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGTTAGTCAGCAGTCATTAAAACAGCAATTTTTTTCCTACCTTTG  885

seq1  AAGTCTGAAAAGAAAAACCAGGCTTAGTGGTATGTATCTAAAATCACCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGAAAAGAAAAACCAGGCTTAGTGGTATGTATCTAAAATCACCAC  935

seq1  TTAGGGAGGCTGAGGCAGGAGGATTGTAACCATCCCTGGATTACACAGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAGGCTGAGGCAGGAGGATTGTAACCATCCCTGGATTACACAGAA  985

seq1  ATACCTTGTTACAAAACAAAACAAAAAAAGAAATTCTCATTCTTTTTCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTGTTACAAAACAAAACAAAAAAAGAAATTCTCATTCTTTTTCTC  1035

seq1  TGTACTTCAAAAGTTCTACTTAGAAATCTTTTAATTAAAAAAAAAAATAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTCAAAAGTTCTACTTAGAAATCTTTTAATTAAAAAAAAAAATAA  1085

seq1  AGAAAATTGACCTGTAATCAGGTTCTCAGCAGAATTC  1136
      |||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTGACCTGTAATCAGGTTCTCAGCAGAATTC  1122

seq1: chr2_73549264_73550122
seq2: B6Ng01-102O12.g_69_877

seq1  GAATTCAGGTCATCAGGCTTGGCCACAGGTGCCTTTATCCTCTGAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCATCAGGCTTGGCCACAGGTGCCTTTATCCTCTGAGCCAT  50

seq1  CTTGGCCTTATTTATTTTTTATGTGCAGAGGACATATCACTGAATTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCTTATTTATTTTTTATGTGCAGAGGACATATCACTGAATTAAAA  100

seq1  CCAAAATTATCCTATTTTGAAAATACATTGCCAGGGCTACTCAGAGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATTATCCTATTTTGAAAATACATTGCCAGGGCTACTCAGAGAAAG  150

seq1  CCTCTCTCAAAAAAAAACAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCAAAAAAAAACAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGGA  200

seq1  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAG  250

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  300

seq1  AGAAAGAAAGAAAAAAAGAAAGAAAGGACATTGTAAGGATTAGAAACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAAAAAGAAAGAAAGGACATTGTAAGGATTAGAAACACA  350

seq1  CAATAATACTGGTTTTGTTGTTGTCCGTCTTTTAAGTGATAAGAACAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATACTGGTTTTGTTGTTGTCCGTCTTTTAAGTGATAAGAACAACA  400

seq1  GAAAATAAAGGAGTAGTAAGTGGTCTAAAGGCAATAAGAGGAGACTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAAGGAGTAGTAAGTGGTCTAAAGGCAATAAGAGGAGACTAATA  450

seq1  TGTTAGCTATAAGTTGGTGGTCAGAAAAAACCATTCTGAGATGATATTTA  500
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTTAGCTATAAGTTGGTGGTCAG-AAAAACCATTCTGAGATGATATTTA  499

seq1  AGTCGGTTCCTGAACAAAAACCTAGCTCAGAATCACAGCAATGGAAAGGC  550
      ||||||||||||||| |||||||||||||| |||||||| ||||||  ||
seq2  AGTCGGTTCCTGAAC-AAAACCTAGCTCAG-ATCACAGC-ATGGAA--GC  544

seq1  CTTTTCCTATGAGATAATCTAGGTTCGAGGGAATCCCGCTATTTGCTTAT  600
      | ||||||||||||| ||||| |||||| ||||| |||||| |||| |||
seq2  C-TTTCCTATGAGAT-ATCTA-GTTCGA-GGAAT-CCGCTA-TTGC-TAT  587

seq1  GTTTTAATTACATTTAAAGATCATTTACTCTCCACAATAAGGTAAGAATG  650
      |  |||||||||||  ||||||| ||||||| ||| |||| |||   |||
seq2  G--TTAATTACATT--AAGATCA-TTACTCT-CAC-ATAA-GTA--GATG  627

seq1  ATTCTACTCTGACTTTGTAAAAGAATTTTATCATTTCCAGTTTTTAACTT  700
      | ||||||||||| ||||  |||||  |||||| ||||||   |||||||
seq2  A-TCTACTCTGAC-TTGT--AAGAA--TTATCA-TTCCAG---TTAACTT  667

seq1  GTTTTTCATGGTAAAGTTTTAATTGATGAAAACATATATATTATATAATT  750
      |   |||||||||     ||||||||||  ||||||||||||||||||||
seq2  G---TTCATGGTA----GTTAATTGATG--AACATATATATTATATAATT  708

seq1  AATATCTGTGTGTATTATCACTTATAACATCATGTACTGATATGTGTTTA  800
      |||||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  AATATCTGTGTGTA-TATCACTTAT-ACATCATGTACTGATATGTGTTTA  756

seq1  TTGTGGAATGACTAACATAATTAACATGCACTACCTCACAGACTTAAAAT  850
      |||| | |||||| |||||||| |||||||||| |||||||||||  |||
seq2  TTGT-GTATGACT-ACATAATT-ACATGCACTA-CTCACAGACTT--AAT  800

seq1  CTGTATTCT  859
      |||||||||
seq2  CTGTATTCT  809