BAC Information

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BAC

Clone NameB6Ng01-103K05
Chromosome2 (Build37)
Map Location 93,597,969 - 93,785,949
singlet/doubletdoublet
Overlap geneExt2, 2610203E10Rik, Gm1967, Gm1335
Upstream geneSyt13, LOC100042784, Trp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82, Alx4
Downstream geneLOC620695, Alkbh3, Hsd17b12, E530001K10Rik, Ttc17, Itpa-ps1, Api5, LOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103K05.bB6Ng01-103K05.g
ACCDH912165DH912166
length1,206698
definitionDH912165|Mus musculus domesticus DNA, BAC clone: B6Ng01-103K05, 5' end.DH912166|Mus musculus domesticus DNA, BAC clone: B6Ng01-103K05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,597,969 - 93,599,190)(93,785,260 - 93,785,949)
sequence
gaattctcacttgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcattcttaatcatcagggaaatgcaaatcaaaacaaccctgagat
accaccaatcagaaggccagggattcacccccagctctggaattaaaggt
gtgtgccaccacatctggctttttcataggggtttaggagactgactgta
ccctagtcctcactttactgcctgcactctctctctccatccctagttgc
ctctccccagcgtaagctcagtgagaagtccttttccgagcacaatctct
aacctaggcagacatgctatattagtgctcagggctctctgtggcaaacc
ctccctggccctgagagtggaacacagtgtgactgccatcaccctgttga
ttaaaacagtgaggcacctggtgatgaatgctccaggaggccacccctca
acccctcactgtctgtcacccacaagccatagccatttctatattgaatg
gagacagctgtatctatccgaaatacagctttcacctctcattcccctgt
ctgagcatgcacagagcaggcggtaggccagcagcacacctttgagcatc
ccagagcatccttgatttactgagcaccatccacacctactcccaccttg
ggtgtctgacattgtaaatttgctggaatctggaggagagactccccgca
ggctgggctcagagtaatctcatctaagtcagctaaatattcctgagggg
agggagaagtcagctacacatgagtcattgctatccagcttcccccctac
tgcttccactgccgacgcagaagtgagccgccctgggtgtaaatcagagt
ctcatcacctgcctgactacagaggtgatgaacaccaaagtgtcctgagt
aggtatttaggaagaaccaaacaaaaatatcaagcacattactggacgtg
cacctagcttttgccttttgttctctgttatttaccaagctctgagttct
tactttgaccatctatctaaactccagcatacccattctaaacccacact
ttcacagtttctctagtctagactcacaaaaagagattggaactcatatt
tattctagacttctagataaacactcaagggtgagttcttaatttccaga
agtctgcccaagaagtgctgttagactgcgatatgaccacgtggaaatct
tcagtt
gaattccattaagtaaatgaataggcatcagcaaaatggcaagtgtgtgc
aaaggtcctctaaacctgaggacctgagtcccatctctgggacccacaag
tagacagacttgatttgcacaggctgtcatcctctgacctacctacctac
ataaacacacacacacacacacacacacacacacacacacacacacaaac
taactaaataaaaatgtaaaaagcaccttaaaaggaagatgaatacacac
tttataagattgagatggtaaatttctaagtcatatatccaaaaaggtat
tgtatctataatatttaggaaatatttacaactttacagcaaaggtgctt
ctagtaaaagtggacaaagggtgccagagagatgctcaactcccagcacc
cacagacagggtcaaccgcccgtaactctagtcccagggcaaccaactcc
ctcttccggcctccatgggtactgtacactcctggtgcatagacacacag
gcacaatacccatacacacttttacattctttaatatttaaaggaaaaaa
tagcataggattcagtcaccatccgaagaagacatacaacagttaaatac
cccgagagtgtcgagccgatgtccagctctggctgctgtgcagacagcct
gattttatcccttttatgagtaatttttttggggggggggggagtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_93597969_93599190
seq2: B6Ng01-103K05.b_39_1244

seq1  GAATTCTCACTTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAATG  50

seq1  TTCAGCATTCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCATTCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100

seq1  ACCACCAATCAGAAGGCCAGGGATTCACCCCCAGCTCTGGAATTAAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAATCAGAAGGCCAGGGATTCACCCCCAGCTCTGGAATTAAAGGT  150

seq1  GTGTGCCACCACATCTGGCTTTTTCATAGGGGTTTAGGAGACTGACTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCACCACATCTGGCTTTTTCATAGGGGTTTAGGAGACTGACTGTA  200

seq1  CCCTAGTCCTCACTTTACTGCCTGCACTCTCTCTCTCCATCCCTAGTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGTCCTCACTTTACTGCCTGCACTCTCTCTCTCCATCCCTAGTTGC  250

seq1  CTCTCCCCAGCGTAAGCTCAGTGAGAAGTCCTTTTCCGAGCACAATCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCCAGCGTAAGCTCAGTGAGAAGTCCTTTTCCGAGCACAATCTCT  300

seq1  AACCTAGGCAGACATGCTATATTAGTGCTCAGGGCTCTCTGTGGCAAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGGCAGACATGCTATATTAGTGCTCAGGGCTCTCTGTGGCAAACC  350

seq1  CTCCCTGGCCCTGAGAGTGGAACACAGTGTGACTGCCATCACCCTGTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGGCCCTGAGAGTGGAACACAGTGTGACTGCCATCACCCTGTTGA  400

seq1  TTAAAACAGTGAGGCACCTGGTGATGAATGCTCCAGGAGGCCACCCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAGTGAGGCACCTGGTGATGAATGCTCCAGGAGGCCACCCCTCA  450

seq1  ACCCCTCACTGTCTGTCACCCACAAGCCATAGCCATTTCTATATTGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCACTGTCTGTCACCCACAAGCCATAGCCATTTCTATATTGAATG  500

seq1  GAGACAGCTGTATCTATCCGAAATACAGCTTTCACCTCTCATTCCCCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGCTGTATCTATCCGAAATACAGCTTTCACCTCTCATTCCCCTGT  550

seq1  CTGAGCATGCACAGAGCAGGCGGTAGGCCAGCAGCACACCTTTGAGCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCATGCACAGAGCAGGCGGTAGGCCAGCAGCACACCTTTGAGCATC  600

seq1  CCAGAGCATCCTTGATTTACTGAGCACCATCCACACCTACTCCCACCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCATCCTTGATTTACTGAGCACCATCCACACCTACTCCCACCTTG  650

seq1  GGTGTCTGACATTGTAAATTTGCTGGAATCTGGAGGAGAGACTCCCCGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTGACATTGTAAATTTGCTGGAATCTGGAGGAGAGACTCCCCGCA  700

seq1  GGCTGGGCTCAGAGTAATCTCATCTAAGTCAGCTAAATATTCCTGAGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGCTCAGAGTAATCTCATCTAAGTCAGCTAAATATTCCTGAGGGG  750

seq1  AGGGAGAAGTCAGCTACACATGAGTCATTGCTATCCAGCTTCCCCCCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAAGTCAGCTACACATGAGTCATTGCTATCCAGCTTCCCCCCTAC  800

seq1  TGCTTCCACTGCCGACGCAGAAGTGAGCCGCCCTGGGTGTAAATCAGGAG  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGCTTCCACTGCCGACGCAGAAGTGAGCCGCCCTGGGTGTAAATCA-GAG  849

seq1  TCTCATCACCTGCCTGACTACAGAGGTGATGAACACCAAAGTGTCCTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCACCTGCCTGACTACAGAGGTGATGAACACCAAAGTGTCCTGAG  899

seq1  TAGGTATTTAGGAAAGAACCAAACAAAAATATCAAGCACATTACTGGACG  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAGGTATTTAGG-AAGAACCAAACAAAAATATCAAGCACATTACTGGACG  948

seq1  TGCACCTAGCTTTTGCCTTTTGTTCTCCTGTTATTTACCAAGCTCTGAGT  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGCACCTAGCTTTTGCCTTTTGTTCT-CTGTTATTTACCAAGCTCTGAGT  997

seq1  TCCTTACTTTGACCATTCTATCTTAAACTCCAAGCATACCCATTCTAAAC  1050
      | ||||||||||||| |||||| |||||||| ||||||||||||||||||
seq2  T-CTTACTTTGACCA-TCTATC-TAAACTCC-AGCATACCCATTCTAAAC  1043

seq1  CCACACTTTCACAGTTTCTCTTAGTCTAGACTCACAAAAAGAGAATTGAA  1100
      |||||||||||||||||||| |||||||||||||||||||||| |||| |
seq2  CCACACTTTCACAGTTTCTC-TAGTCTAGACTCACAAAAAGAG-ATTGGA  1091

seq1  ACTCCAATTATTTATTCTTAGAACTCTAGATAAACACAC-AGGGTGAAGT  1149
      ||||    ||||||||| ||||  ||||||||||||| | |||||| |||
seq2  ACTC---ATATTTATTC-TAGACTTCTAGATAAACACTCAAGGGTG-AGT  1136

seq1  CCTTAATTCCCAGACAGTCTGCCCAA-AGATGCTGGTAGCACTTGCAGAT  1198
       ||||||| ||||| ||||||||||| |  ||||| ||| |||   | ||
seq2  TCTTAATTTCCAGA-AGTCTGCCCAAGAAGTGCTGTTAG-ACTGCGATAT  1184

seq1  GAGCACACGTGAGAATCTTCAGTT  1222
      ||   ||||||  |||||||||||
seq2  GA--CCACGTGGAAATCTTCAGTT  1206

seq1: chr2_93785260_93785949
seq2: B6Ng01-103K05.g_69_766 (reverse)

seq1  TCCACT--CCCCCCCCCCAAAAAAATTACTCATAAAAGGGATAAAATCAG  48
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCCCCCCCCCCCCAAAAAAATTACTCATAAAAGGGATAAAATCAG  50

seq1  GCTGTCTGCACAGCAGCCAGAGCTGGACATCGGCTCGACACTCTCGGGGT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTGCACAGCAGCCAGAGCTGGACATCGGCTCGACACTCTCGGGGT  100

seq1  ATTTAACTGTTGTATGTCTTCTTCGGATGGTGACTGAATCCTATGCTATT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACTGTTGTATGTCTTCTTCGGATGGTGACTGAATCCTATGCTATT  150

seq1  TTTTCCTTTAAATATTAAAGAATGTAAAAGTGTGTATGGGTATTGTGCCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTAAATATTAAAGAATGTAAAAGTGTGTATGGGTATTGTGCCT  200

seq1  GTGTGTCTATGCACCAGGAGTGTACAGTACCCATGGAGGCCGGAAGAGGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTATGCACCAGGAGTGTACAGTACCCATGGAGGCCGGAAGAGGG  250

seq1  AGTTGGTTGCCCTGGGACTAGAGTTACGGGCGGTTGACCCTGTCTGTGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTTGCCCTGGGACTAGAGTTACGGGCGGTTGACCCTGTCTGTGGG  300

seq1  TGCTGGGAGTTGAGCATCTCTCTGGCACCCTTTGTCCACTTTTACTAGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGAGTTGAGCATCTCTCTGGCACCCTTTGTCCACTTTTACTAGAA  350

seq1  GCACCTTTGCTGTAAAGTTGTAAATATTTCCTAAATATTATAGATACAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTTGCTGTAAAGTTGTAAATATTTCCTAAATATTATAGATACAAT  400

seq1  ACCTTTTTGGATATATGACTTAGAAATTTACCATCTCAATCTTATAAAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTTGGATATATGACTTAGAAATTTACCATCTCAATCTTATAAAGT  450

seq1  GTGTATTCATCTTCCTTTTAAGGTGCTTTTTACATTTTTATTTAGTTAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTCATCTTCCTTTTAAGGTGCTTTTTACATTTTTATTTAGTTAGT  500

seq1  T------TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTATGT  542
      |      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTATGT  550

seq1  AGGTAGGTAGGTCAGAGGATGACAGCCTGTGCAAATCAAGTCTGTCTACT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGTAGGTCAGAGGATGACAGCCTGTGCAAATCAAGTCTGTCTACT  600

seq1  TGTGGGTCCCAGAGATGGGACTCAGGTCCTCAGGTTTAGAGGACCTTTGC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTCCCAGAGATGGGACTCAGGTCCTCAGGTTTAGAGGACCTTTGC  650

seq1  ACACACTTGCCATTTTGCTGATGCCTATTCATTTACTTAATGGAATTC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTTGCCATTTTGCTGATGCCTATTCATTTACTTAATGGAATTC  698