BAC Information

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BAC

Clone NameB6Ng01-103N08
Chromosome2 (Build37)
Map Location 37,271,013 - 37,272,186
singlet/doubletsinglet
Overlap geneRc3h2
Upstream geneOlfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl
Downstream geneZbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a, LOC100040947, Lhx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103N08.bB6Ng01-103N08.g
ACCDH912302DH912303
length1,1491,141
definitionDH912302|Mus musculus domesticus DNA, BAC clone: B6Ng01-103N08, 5' end.DH912303|Mus musculus domesticus DNA, BAC clone: B6Ng01-103N08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaatttcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccgttgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagaaagtagccaagagctaaagggatctgcaacccta
tagtgaacacattatgagctaacagtaccccgagctctgactctagctgc
atatatatcaaagatgctagtcggcatcactgaagagagccattgacttg
cacttatatgcccagtaaggattacaggccaaaggggaatgggtgggca
gaattccaggacagccagggctacacagagaaaacctgtttcagaaacaa
acaaaaaacaaaacaaaaacaaaaaaaagaaagaaagaaaaaagaaaagt
caaaagaaacaaagcaaaacaaaaacccaaaaagtagattgtgactcttg
cttgctttactaaatgctatacaattactaatcaaacaagaaaatatgta
aaatgattctcttatagttatttttctgtgtttgtactataattcagtgc
aaagataaatattttataccttgttttctgcttagaactattccaagaga
ataatgttttatttttctaagccaactctattgggcctgacaagttttaa
aaacacagatacatacttttgtcaaaattattatgaactatgacaaaaaa
ttctaggtaattttttttccattttattttatagaggggcgagatgcatt
ggagccatgcgcatgttaacggacagcttgtgagagtttgttctctctta
ccacaatgttggtcccagggatggaacttgagttgccaagttgaattgta
catgcttttttctgttgagctgtcttactggccatagacagtgttttctt
tgcttttgtcattattctttattttttcagttatagacaacatccctgtc
atcacagtcatccgtagattttcagtaactcactaagctgaggcacatcc
taatgtagcatagacttcctcctttagatgccaaggtgacagctcacaaa
caaatgtagcacattgttttgatgattgtggtgctaggaattgaatcagg
gtctcctgcctgctgagcagactgacagagctacatctccatccctacag
tattattttgatcaatagtttctgaagcttagcagctattaagacatatc
aatatattttgaggtagtggttatccaaagaaaacacttcatcttcaacg
gtccagtaatttgtgtctttggttttccctttttttatttgttgttgttg
ctgctgtagtttttcttttccttttctttttaagattattatttatatga
agtacactgcactgtctcagacacactaagcgggcatctgatgtcatacg
aatggctggagcacatgttgttttgctggttgaactcagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_37271013_37272186
seq2: B6Ng01-103N08.g_66_1206 (reverse)

seq1  GACTGAGTTCAACCCAGCAAAACAACATGGTGGCTCACAGCCATCCGTAA  50
      |||||||||||| ||||||||||||||||   |||| ||||||| ||| |
seq2  GACTGAGTTCAA-CCAGCAAAACAACATG--TGCTC-CAGCCATTCGT-A  45

seq1  TGACATCAGATGCCCGCTTCTGGTGTGTCTGAAGACAGTTGCAGTGTACT  100
      ||||||||||||||||||  | ||||||||| |||||| |||||||||||
seq2  TGACATCAGATGCCCGCT--TAGTGTGTCTG-AGACAG-TGCAGTGTACT  91

seq1  TACATATTATAAATAAATAAATCTTTAAAAAAAGAAAAAGGAAAAAGAAA  150
      | ||   |||||||||   ||||||   ||||||||||  | ||||||||
seq2  T-CA---TATAAATAA--TAATCTT---AAAAAGAAAA--GGAAAAGAAA  130

seq1  AACCTAAACAAGCAAGCAAACAAACAAACAAATAAAAAAAAAGGGAAAAC  200
      || ||| |  |||     |||||   |||||||  |||||||||||||||
seq2  AA-CTACAGCAGC-----AACAA--CAACAAAT--AAAAAAAGGGAAAAC  170

seq1  CAAAGAACACAAATTACTGGACCGTTTGAAGATTGAAGTGTTTTCTTTGG  250
      ||||| |||||||||||||||||| ||||||| |||||||||||||||||
seq2  CAAAG-ACACAAATTACTGGACCG-TTGAAGA-TGAAGTGTTTTCTTTGG  217

seq1  ATAACCACTACCTCAAAATATATTGATATGTCTTAATAGCTGCTAAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCACTACCTCAAAATATATTGATATGTCTTAATAGCTGCTAAGCTT  267

seq1  CAGAAACTATTGATCAAAATAATACTGTAGGGATGGAGATGTAGCTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACTATTGATCAAAATAATACTGTAGGGATGGAGATGTAGCTCTGT  317

seq1  CAGTCTGCTCAGCAGGCAGGAGACCCTGATTCAATTCCTAGCACCACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGCTCAGCAGGCAGGAGACCCTGATTCAATTCCTAGCACCACAAT  367

seq1  CATCAAAACAATGTGCTACATTTGTTTGTGAGCTGTCACCTTGGCATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAACAATGTGCTACATTTGTTTGTGAGCTGTCACCTTGGCATCTA  417

seq1  AAGGAGGAAGTCTATGCTACATTAGGATGTGCCTCAGCTTAGTGAGTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGAAGTCTATGCTACATTAGGATGTGCCTCAGCTTAGTGAGTTAC  467

seq1  TGAAAATCTACGGATGACTGTGATGACAGGGATGTTGTCTATAACTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCTACGGATGACTGTGATGACAGGGATGTTGTCTATAACTGAAA  517

seq1  AAATAAAGAATAATGACAAAAGCAAAGAAAACACTGTCTATGGCCAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGAATAATGACAAAAGCAAAGAAAACACTGTCTATGGCCAGTAA  567

seq1  GACAGCTCAACAGAAAAAAGCATGTACAATTCAACTTGGCAACTCAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTCAACAGAAAAAAGCATGTACAATTCAACTTGGCAACTCAAGTT  617

seq1  CCATCCCTGGGACCAACATTGTGGTAAGAGAGAACAAACTCTCACAAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCTGGGACCAACATTGTGGTAAGAGAGAACAAACTCTCACAAGCT  667

seq1  GTCCGTTAACATGCGCATGGCTCCAATGCATCTCGCCCCTCTATAAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGTTAACATGCGCATGGCTCCAATGCATCTCGCCCCTCTATAAAATA  717

seq1  AAATGGAAAAAAAATTACCTAGAATTTTTTGTCATAGTTCATAATAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAAAAAAAATTACCTAGAATTTTTTGTCATAGTTCATAATAATTT  767

seq1  TGACAAAAGTATGTATCTGTGTTTTTAAAACTTGTCAGGCCCAATAGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAAGTATGTATCTGTGTTTTTAAAACTTGTCAGGCCCAATAGAGT  817

seq1  TGGCTTAGAAAAATAAAACATTATTCTCTTGGAATAGTTCTAAGCAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGAAAAATAAAACATTATTCTCTTGGAATAGTTCTAAGCAGAAA  867

seq1  ACAAGGTATAAAATATTTATCTTTGCACTGAATTATAGTACAAACACAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTATAAAATATTTATCTTTGCACTGAATTATAGTACAAACACAGA  917

seq1  AAAATAACTATAAGAGAATCATTTTACATATTTTCTTGTTTGATTAGTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACTATAAGAGAATCATTTTACATATTTTCTTGTTTGATTAGTAA  967

seq1  TTGTATAGCATTTAGTAAAGCAAGCAAGAGTCACAATCTACTTTTTGGGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAGCATTTAGTAAAGCAAGCAAGAGTCACAATCTACTTTTTGGGT  1017

seq1  TTTTGTTTTGCTTTGTTTCTTTTGACTTTTCTTTTTTCTTTCTTTCTTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGCTTTGTTTCTTTTGACTTTTCTTTTTTCTTTCTTTCTTTT  1067

seq1  TTTTGTTTTTGTTTTGTTTTTTGTTTGTTTCTGAAACAGGTTTTCTCTGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTGTTTTGTTTTTTGTTTGTTTCTGAAACAGGTTTTCTCTGT  1117

seq1  GTAGCCCTGGCTGTCCTGGAATTC  1174
      ||||||||||||||||||||||||
seq2  GTAGCCCTGGCTGTCCTGGAATTC  1141