BAC Information

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BAC

Clone NameB6Ng01-103N15
Chromosome2 (Build37)
Map Location 148,545,695 - 148,650,942
singlet/doubletdoublet
Overlap geneNapb, Cstl1, Cst11, 8030411F24Rik, Cst12, Cst8, Cst13
Upstream geneLOC100043820, Foxa2, LOC383752, Sstr4, Thbd, Cd93, Nxt1, Gzf1
Downstream geneCst9, 9230104L09Rik, Cst3, OTTMUSG00000015744, Gm1330, EG668921, LOC433483, LOC383754, LOC100043593, LOC241715, Cst10, EG667048
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103N15.bB6Ng01-103N15.g
ACCDH912316DH912317
length498936
definitionDH912316|Mus musculus domesticus DNA, BAC clone: B6Ng01-103N15, 5' end.DH912317|Mus musculus domesticus DNA, BAC clone: B6Ng01-103N15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,650,440 - 148,650,942)(148,545,695 - 148,546,629)
sequence
caactcagagtattaactgtgatgaatgcaatgacctgtttattgttcta
cattttctattaacaaacctactgatctgctaggtttaagcaaaaataaa
taatcatgataatctagtttccatatatgtatacacacacacacacacac
acacacacacacacatatatattcacacaaagtacagaatgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtatgtatatatggaaactagattat
catgattatttatttttgcttaaaccgagcagatgagtgggtgtgttaaa
agaaaatgtagaaaaaaagagggggtggtgaatatcacagagcatctacg
gtgaaaacctgacgttgatttccataatctccatggtggaagaagaggct
ggcaccttcttccctccccccacccctccccctctctcaaatctctctat
ctcacatacagagaggggtggagaaagatatattggaggggagaggtc
gaattccaagacacaacaatatccaggctacagaatggtcactgcttagt
gctcttaaccagatttaggtggacaaatagagtagaaagatcgggaaaat
atagtttctagaggaaaggaatatgagcagtttgaaacctgcgggcagct
gggtggtggtggcaccaccaggatggtggtggctcacacctttaatccca
gcacttgggaggcagaggcagttggatcttttcgttccaggccagcctgg
tctacagagcgagctccaagatggtcagggctacccagagaaaccttgtc
acaaaaaagcaaaataaaagctgtgagttaacatgagcttggagaaagca
tctgccaagtgttaaagagactacagccaagaaagagaaatcacagacac
tgagtagaatacgaaaagtgtcttagcagggggtggggagggagcatggc
tgcatacaccaagaacttcagaacttgttggaaaaccctgcatattaaaa
ctacttttattctgtattgaagttcactgagatgtatagactttagatct
agctattcttgctgaatgttttcctcctacaagtgttttacaataaagct
ttaataaaataattgtatatgtgcatttgtgtgcatcagacttcaggtga
gtgcatggtggtcagaacaactttcaggaattcgttctcccttttcacct
ctttgaagtggggtctccctttgttttgctgctaggctgcatactccaga
ctcgctggcccgagagcttccagttgattcttatgtctctattccacact
ccaactcatggatttgctgggatgaccgatgcatgctactgcaatctaag
ctactagtgagtttaaggccagtgtggctacatgatgctttggccttgca
aagaaggatggagggaaggaaaggggagggaagtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_148650440_148650942
seq2: B6Ng01-103N15.b_51_554 (reverse)

seq1  GCCCTCTCCCCTCC-CTCTATCTTTCTCCACCCCTCTCTGTATGTGAGAT  49
      | ||||||||||||  | ||||||||||||||||||||||||||||||||
seq2  GACCTCTCCCCTCCAATATATCTTTCTCCACCCCTCTCTGTATGTGAGAT  50

seq1  AGAGAGATTTGAGAGAGGGGGAGGGGTGGGGGGAGGGAAGAAGGTGCCAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGATTTGAGAGAGGGGGAGGGGTGGGGGGAGGGAAGAAGGTGCCAG  100

seq1  CCTCTTCTTCCACCATGGAGATTCTGGAAATCAAACTCAGGTTTTCACCC  149
      ||||||||||||||||||||||| ||||||||||  ||||||||||||| 
seq2  CCTCTTCTTCCACCATGGAGATTATGGAAATCAACGTCAGGTTTTCACCG  150

seq1  TTGATGGTAGGTGGTTTTACCCAGGGAGCCATCTCACTGGTTCAATTATG  199
      | |||| |  ||| | ||  |||         | | ||  ||   || | 
seq2  TAGATGCTCTGTGATATTCACCA---------CCCCCTCTTT---TTTTC  188

seq1  TGTATTTTGTATTTATGAAATCATACTGTATTTTGTTTATTTTGGCACTA  249
      |  ||||| | ||||  | | |  |||  || |  |   |||  |||  |
seq2  TACATTTTCT-TTTAACACA-CCCACT-CATCTGCTCGGTTTAAGCAAAA  235

seq1  AAAATGCCACAGGA---------------ATTCACATACACACACACACA  284
      | ||     || ||               ||  |||||||||||||||||
seq2  ATAAATAATCATGATAATCTAGTTTCCATATATACATACACACACACACA  285

seq1  CACACACACACACACACACACACATTCTGTACTTTGTGTGAATATATATG  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACATTCTGTACTTTGTGTGAATATATATG  335

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACATATATGGAAACTAG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACATATATGGAAACTAG  385

seq1  ATTATCATGATTATTTATTTTTGCTTAAACCTAGCAGATCAGTAGGTTTG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATGATTATTTATTTTTGCTTAAACCTAGCAGATCAGTAGGTTTG  435

seq1  TTAATAGAAAATGTAGAACAATAAACAGGTCATTGCATTCATCACAGTTA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGAAAATGTAGAACAATAAACAGGTCATTGCATTCATCACAGTTA  485

seq1  ATACTCTGAGTTGGAATTC  503
      |||||||||||||||||||
seq2  ATACTCTGAGTTGGAATTC  504

seq1: chr2_148545695_148546629
seq2: B6Ng01-103N15.g_69_1004

seq1  GAATTCCAAGACACAACAATATCCAGGCTACAGAATGGTCACTGCTTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGACACAACAATATCCAGGCTACAGAATGGTCACTGCTTAGT  50

seq1  GCTCTTAACCAGATTTAGGTGGACAAATAGAGTAGAAAGATCGGGAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAACCAGATTTAGGTGGACAAATAGAGTAGAAAGATCGGGAAAAT  100

seq1  ATAGTTTCTAGAGGAAAGGAATATGAGCAGTTTGAAACCTGCGGGCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTCTAGAGGAAAGGAATATGAGCAGTTTGAAACCTGCGGGCAGCT  150

seq1  GGGTGGTGGTGGCACCACCAGGATGGTGGTGGCTCACACCTTTAATCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTGGTGGCACCACCAGGATGGTGGTGGCTCACACCTTTAATCCCA  200

seq1  GCACTTGGGAGGCAGAGGCAGTTGGATCTTTTCGTTCCAGGCCAGCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGGAGGCAGAGGCAGTTGGATCTTTTCGTTCCAGGCCAGCCTGG  250

seq1  TCTACAGAGCGAGCTCCAAGATGGTCAGGGCTACCCAGAGAAACCTTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAGCGAGCTCCAAGATGGTCAGGGCTACCCAGAGAAACCTTGTC  300

seq1  ACAAAAAAGCAAAATAAAAGCTGTGAGTTAACATGAGCTTGGAGAAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAGCAAAATAAAAGCTGTGAGTTAACATGAGCTTGGAGAAAGCA  350

seq1  TCTGCCAAGTGTTAAAGAGACTACAGCCAAGAAAGAGAAATCACAGACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAAGTGTTAAAGAGACTACAGCCAAGAAAGAGAAATCACAGACAC  400

seq1  TGAGTAGAATACGAAAAGTGTCTTAGCAGGGGGTGGGGAGGGAGCATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGAATACGAAAAGTGTCTTAGCAGGGGGTGGGGAGGGAGCATGGC  450

seq1  TGCATACACCAAGAACTTCAGAACTTGTTGGAAAACCCTGCATATTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACACCAAGAACTTCAGAACTTGTTGGAAAACCCTGCATATTAAAA  500

seq1  CTACTTTTATTCTGTATTGAAGTTCACTGAGATGTATAGACTTTAGATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTTATTCTGTATTGAAGTTCACTGAGATGTATAGACTTTAGATCT  550

seq1  AGCTATTCTTGCTGAATGTTTTCCTCCTACAAGTGTTTTACAATAAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTCTTGCTGAATGTTTTCCTCCTACAAGTGTTTTACAATAAAGCT  600

seq1  TTAATAAAATAATTGTATATGTGCATTTGTGTGCATCAGACTTCAGGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAATAATTGTATATGTGCATTTGTGTGCATCAGACTTCAGGTGA  650

seq1  GTGCATGGTGGTCAGAACAACTTTCAGGAATTCGTTCTCCC-TTTCACCT  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTGCATGGTGGTCAGAACAACTTTCAGGAATTCGTTCTCCCTTTTCACCT  700

seq1  CTTTGAAGTGGGGTCTCCCTTGTTTTTGCTGCTAGGCTGCATACTCCAGA  749
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  CTTTGAAGTGGGGTCTCCCTTTGTTTTGCTGCTAGGCTGCATACTCCAGA  750

seq1  CTCGCTGGCCCGAGAGCTTCCAGTTGATTCTTATGTCTCTATTCCACACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCTGGCCCGAGAGCTTCCAGTTGATTCTTATGTCTCTATTCCACACT  800

seq1  CCAACTCATAGGATTGCTGGGATGACCGATGCATGCTACTGCAATCTAAG  849
      ||||||||| |  |||||||||||||||||||||||||||||||||||||
seq2  CCAACTCATGGATTTGCTGGGATGACCGATGCATGCTACTGCAATCTAAG  850

seq1  CTACTTAGTGAGTTTAAGGCCAGTGTGGCTACATGATGCTTTGG-CTTGC  898
      |||| ||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTAC-TAGTGAGTTTAAGGCCAGTGTGGCTACATGATGCTTTGGCCTTGC  899

seq1  AAAGAAGGATGGAGGGAAGGAAAGGGGAGGGAAGTAA  935
      ||||||||||||||||||||||||||||||||||| |
seq2  AAAGAAGGATGGAGGGAAGGAAAGGGGAGGGAAGTTA  936