BAC Information

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BAC

Clone NameB6Ng01-104M08
Chromosome2 (Build37)
Map Location 68,531,836 - 68,634,888
singlet/doubletdoublet
Overlap gene4932414N04Rik
Upstream geneLOC621171, LOC227995, B3galt1, Stk39, LOC100039683, Gm1323, 4933409G03Rik
Downstream geneLOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9, Lrp2, Bbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104M08.bB6Ng01-104M08.g
ACCDH912972DH912973
length1,1041,154
definitionDH912972|Mus musculus domesticus DNA, BAC clone: B6Ng01-104M08, 5' end.DH912973|Mus musculus domesticus DNA, BAC clone: B6Ng01-104M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,531,836 - 68,532,942)(68,633,712 - 68,634,888)
sequence
gaattcatcttgagggagtcagttctccccttccactgtgttggtccttg
gtcatcagtactggtagcaagtagctttacctactgcatcatcttgctct
tctgtgttgttctagagattgtcatttgttagacctttctttatactttg
ttttaaatgtttgtgttttcaggaaaaccaagcttatatgtgacatgcag
agaccagaatggggaaaatggcagtaagaacaaccagccattggtgtgta
attctttaatttaaaattctcatttaatggatttgtttaataatgtagca
ttgaccaagtagaataacattttatagttcactgaagaatctataatgtt
taaaattcaattagaaaaattctgaaatataaacagaagttagaatattc
atgcacgttttatgaaacttttcctttgaaatgagtcgaaatttttattt
atcaaggtatatgcctccttatataataaagtaatagcaagttgtgtttg
tggtctggataataatccctatcagataaaatgtcattgattcctattga
gattcagtatctgcaatgtcaaaaaatgtgttttttccttcttgtgactg
acttgaatattttcactgtaggagagcagtgaatcataaggtcaactctg
ctacctaggatagaaaaatgacaccttccagaaaaggatcgttggtattt
ggttacaaagaatgccatcctaatgtacttccttccaatgtagaaattta
agaattcttatgcaatagttgtattctgttaactggagtagatataagaa
tatgttgattgaactcatacagctacctcctagtggtacagtgcaggaac
ttggttttctttgaggctgcgttgactttagttcctgttcaactttcttt
tgttcacctgatgtaactgtcctctttgaggttcattgcctcagctgcta
acctagtccttgtcctggaagcttctagtctctatgaaatcttatctagg
cctagatctagttctttctgatttctggctggctggtcaactcagctgtt
ctggctcaaactcctctgactgattcaatctgctctctctcaaactctga
tttt
gaattcttattcccatcagttatggctatgtcattgaattataggaagga
aggggaaagaagagaggggtggtttataggaaatagaaactgggaagcaa
aacaagaatgaaaggagaagaatttgaaagcagtgtgtcctgttacagca
cctcttggcttcctcatgccagcggctgcagatgggagacaagggaagca
cccgactttatcctttgtccagagttccaggtctgggttgcaggccagag
gacggtcgaggatgaagcagcagatcccaggacttcttatggataggaag
aagccagaaaaaaaggcctccttccttttatgagattaagattactttgt
catccaggctggcttctcctttatggtgcccccaccccaccccagtccct
catgtcggggctacaggcacttttgacagccagtctaagccactaaaaca
gtttcctggactcactgagaaaaaaaaaattctcacttactgattaccaa
ataccttgccttgtaaacatgtccatttcctaaaagttcactgttttaaa
ggagagcatccgtttcgaaagactttcatatcgcaatctgtaacagcaca
aactattaagtaattctgcaggaatttcaacattaggaaagggctgtgtg
tcacaattatgagaggaaacagcacattcatggactcgaccgtggcagat
tagtaaggagactccttattgacataagagtgagatcaaaagaagcaggt
gacaaagctcctggtattagcactgctgggtaccctctcaattcctggtt
ctgcaggggtcacagggtgtgtgaagcattatgtgacccctcccaagggg
acgtgaacaaacctttattcattccatataagacactatagacagaccaa
acagtttccatccaaattcagcttgatgaagcaaagagtttattggggtt
ccttacagaagcatgcaggtcttatggagggatgagtgatttaaaagcag
agcatcactggaaagcctttcaactggcatgagtgacacccaggaagtgt
actccagaactctctagtgaattgcagcagatcacacggatgcattctcg
gcccactgcctgctataaacaaagactggtgcctggagtcctaatgttga
gatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_68531836_68532942
seq2: B6Ng01-104M08.b_46_1149

seq1  GAATTCATCTTGAGGGAGTCAGTTCTCCCCTTCCACTGTGTTGGTCCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTGAGGGAGTCAGTTCTCCCCTTCCACTGTGTTGGTCCTTG  50

seq1  GTCATCAGTACTGGTAGCAAGTAGCTTTACCTACTGCATCATCTTGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAGTACTGGTAGCAAGTAGCTTTACCTACTGCATCATCTTGCTCT  100

seq1  TCTGTGTTGTTCTAGAGATTGTCATTTGTTAGACCTTTCTTTATACTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTGTTCTAGAGATTGTCATTTGTTAGACCTTTCTTTATACTTTG  150

seq1  TTTTAAATGTTTGTGTTTTCAGGAAAACCAAGCTTATATGTGACATGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATGTTTGTGTTTTCAGGAAAACCAAGCTTATATGTGACATGCAG  200

seq1  AGACCAGAATGGGGAAAATGGCAGTAAGAACAACCAGCCATTGGTGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGAATGGGGAAAATGGCAGTAAGAACAACCAGCCATTGGTGTGTA  250

seq1  ATTCTTTAATTTAAAATTCTCATTTAATGGATTTGTTTAATAATGTAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTAATTTAAAATTCTCATTTAATGGATTTGTTTAATAATGTAGCA  300

seq1  TTGACCAAGTAGAATAACATTTTATAGTTCACTGAAGAATCTATAATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCAAGTAGAATAACATTTTATAGTTCACTGAAGAATCTATAATGTT  350

seq1  TAAAATTCAATTAGAAAAATTCTGAAATATAAACAGAAGTTAGAATATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCAATTAGAAAAATTCTGAAATATAAACAGAAGTTAGAATATTC  400

seq1  ATGCACGTTTTATGAAACTTTTCCTTTGAAATGAGTCGAAATTTTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACGTTTTATGAAACTTTTCCTTTGAAATGAGTCGAAATTTTTATTT  450

seq1  ATCAAGGTATATGCCTCCTTATATAATAAAGTAATAGCAAGTTGTGTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGTATATGCCTCCTTATATAATAAAGTAATAGCAAGTTGTGTTTG  500

seq1  TGGTCTGGATAATAATCCCTATCAGATAAAATGTCATTGATTCCTATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGGATAATAATCCCTATCAGATAAAATGTCATTGATTCCTATTGA  550

seq1  GATTCAGTATCTGCAATGTCAAAAAATGTGTTTTTTCCTTCTTGTGACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGTATCTGCAATGTCAAAAAATGTGTTTTTTCCTTCTTGTGACTG  600

seq1  ACTTGAATATTTTCACTGTAGGAGAGCAGTGAATCATAAGGTCAACTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAATATTTTCACTGTAGGAGAGCAGTGAATCATAAGGTCAACTCTG  650

seq1  CTACCTAGGATAGAAAAATGACACCTTCCAGAAAAGGATCGTTGGTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTAGGATAGAAAAATGACACCTTCCAGAAAAGGATCGTTGGTATTT  700

seq1  GGTTACAAAGAATGCCATCCTAATGTACTTCCTTCCAATGTAGAAATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACAAAGAATGCCATCCTAATGTACTTCCTTCCAATGTAGAAATTTA  750

seq1  AGAATTCTTATGCAATAGTTGTATTCTGTTAACTGGAGTAGATATAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTTATGCAATAGTTGTATTCTGTTAACTGGAGTAGATATAAGAA  800

seq1  TATGTTGATTGAACTCATACAGCTACCTCCTAGTGGTACAGTGCAGGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGATTGAACTCATACAGCTACCTCCTAGTGGTACAGTGCAGGAAC  850

seq1  TTGGTTTTCTTTGAGGCTGCGTTGACTTTAGTTCCTGTTCAACTTTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTCTTTGAGGCTGCGTTGACTTTAGTTCCTGTTCAACTTTCTTT  900

seq1  TGTTCACCTGATGTAACTGTCCTCTTTGAGGTTCATTGCCTCAGGCTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTTCACCTGATGTAACTGTCCTCTTTGAGGTTCATTGCCTCA-GCTGCT  949

seq1  AACCTAGTCCTTGTCCTGGAAGCTTCTAGTCTCTATGAAATCTTATCTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGTCCTTGTCCTGGAAGCTTCTAGTCTCTATGAAATCTTATCTAG  999

seq1  GCCTAGATCTAGTTCTTTCTGATTTCTGGCTGGCTGGTCAACTCAGCTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGATCTAGTTCTTTCTGATTTCTGGCTGGCTGGTCAACTCAGCTGT  1049

seq1  TCTGGCTCAAACTCCTCTGACTGATTCAATCTGGCTTCTCTCTCAGACTC  1100
      |||||||||||||||||||||||||||||||||   ||||||||| ||||
seq2  TCTGGCTCAAACTCCTCTGACTGATTCAATCTG--CTCTCTCTCAAACTC  1097

seq1  TGATTTT  1107
      |||||||
seq2  TGATTTT  1104

seq1: chr2_68633712_68634888
seq2: B6Ng01-104M08.g_69_1222 (reverse)

seq1  AATCTCAGAACATTAAAGGACTCACAAGGCACCAGTCTACTGTTATAAAA  50
      ||||||  ||||||  ||||||  | ||||||||||||    ||||   |
seq2  AATCTC--AACATT--AGGACT--CCAGGCACCAGTCTTTGTTTAT---A  41

seq1  GCAGGGGCAGGGTGGGGCGGGGAATGCATCCGTGTGGATCTGCTGCAAAT  100
      |||  |||||    |||| | |||||||||||||| |||||||||||| |
seq2  GCA--GGCAG---TGGGCCGAGAATGCATCCGTGT-GATCTGCTGCAATT  85

seq1  CAACTAGAGAGTTCTTGGAGTACAGCTTTCCTGGGTTGTCACTCATGCCA  150
      | |||||||||||| |||||||||   |||||||| ||||||||||||||
seq2  C-ACTAGAGAGTTC-TGGAGTACA--CTTCCTGGG-TGTCACTCATGCCA  130

seq1  GTTGGAAGGGCTTTCCAGTGATGCCTCTGCCTTTAAATCACTCATCCCTC  200
      ||| ||| ||||||||||||||| |||||| |||||||||||||||||||
seq2  GTT-GAAAGGCTTTCCAGTGATG-CTCTGCTTTTAAATCACTCATCCCTC  178

seq1  CATAAAGAACCTGCATGCTTCTGTAAGGAACCCCAATAAACTCTTTGCTT  250
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  CATAA--GACCTGCATGCTTCTGTAAGGAACCCCAATAAACTCTTTGCTT  226

seq1  CATCAAGCTGAATTTGGATGG-AACTGTTTGGTCTGTCTATAGTGTCTTA  299
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATCAAGCTGAATTTGGATGGAAACTGTTTGGTCTGTCTATAGTGTCTTA  276

seq1  TATGGAATGAATAAAGGTTTGTTCACGTCCCCTTGGGAGGGGTCACATAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAATGAATAAAGGTTTGTTCACGTCCCCTTGGGAGGGGTCACATAA  326

seq1  TGCTTCACACACCCTGTGACCCCTGCAGAACCAGGAATTGAGAGGGTACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCACACACCCTGTGACCCCTGCAGAACCAGGAATTGAGAGGGTACC  376

seq1  CAGCAGTGCTAATACCAGGAGCTTTGTCACCTGCTTCTTTTGATCTCACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTGCTAATACCAGGAGCTTTGTCACCTGCTTCTTTTGATCTCACT  426

seq1  CTTATGTCAATAAGGAGTCTCCTTACTAATCTGCCACGGTCGAGTCCATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTCAATAAGGAGTCTCCTTACTAATCTGCCACGGTCGAGTCCATG  476

seq1  AATGTGCTGTTTCCTCTCATAATTGTGACACACAGCCCTTTCCTAATGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCTGTTTCCTCTCATAATTGTGACACACAGCCCTTTCCTAATGTT  526

seq1  GAAATTCCTGCAGAATTACTTAATAGTTTGTGCTGTTACAGATTGCGATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCCTGCAGAATTACTTAATAGTTTGTGCTGTTACAGATTGCGATA  576

seq1  TGAAAGTCTTTCGAAACGGATGCTCTCCTTTAAAACAGTGAACTTTTAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTCTTTCGAAACGGATGCTCTCCTTTAAAACAGTGAACTTTTAGG  626

seq1  AAATGGACATGTTTACAAGGCAAGGTATTTGGTAATCAGTAAGTGAGAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGACATGTTTACAAGGCAAGGTATTTGGTAATCAGTAAGTGAGAAT  676

seq1  TTTTTTTTTCTCAGTGAGTCCAGGAAACTGTTTTAGTGGCTTAGACTGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCTCAGTGAGTCCAGGAAACTGTTTTAGTGGCTTAGACTGGC  726

seq1  TGTCAAAAGTGCCTGTAGCCCCGACATGAGGGACTGGGGTGGGGTGGGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAAGTGCCTGTAGCCCCGACATGAGGGACTGGGGTGGGGTGGGGG  776

seq1  CACCATAAAGGAGAAGCCAGCCTGGATGACAAAGTAATCTTAATCTCATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATAAAGGAGAAGCCAGCCTGGATGACAAAGTAATCTTAATCTCATA  826

seq1  AAAGGAAGGAGGCCTTTTTTTCTGGCTTCTTCCTATCCATAAGAAGTCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGGAGGCCTTTTTTTCTGGCTTCTTCCTATCCATAAGAAGTCCT  876

seq1  GGGATCTGCTGCTTCATCCTCGACCGTCCTCTGGCCTGCAACCCAGACCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTGCTGCTTCATCCTCGACCGTCCTCTGGCCTGCAACCCAGACCT  926

seq1  GGAACTCTGGACAAAGGATAAAGTCGGGTGCTTCCCTTGTCTCCCATCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCTGGACAAAGGATAAAGTCGGGTGCTTCCCTTGTCTCCCATCTG  976

seq1  CAGCCGCTGGCATGAGGAAGCCAAGAGGTGCTGTAACAGGACACACTGCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGCTGGCATGAGGAAGCCAAGAGGTGCTGTAACAGGACACACTGCT  1026

seq1  TTCAAATTCTTCTCCTTTCATTCTTGTTTTGCTTCCCAGTTTCTATTTCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTCTTCTCCTTTCATTCTTGTTTTGCTTCCCAGTTTCTATTTCC  1076

seq1  TATAAACCACCCCTCTCTTCTTTCCCCTTCCTTCCTATAATTCAATGACA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACCACCCCTCTCTTCTTTCCCCTTCCTTCCTATAATTCAATGACA  1126

seq1  TAGCCATAACTGATGGGAATAAGAATTC  1177
      ||||||||||||||||||||||||||||
seq2  TAGCCATAACTGATGGGAATAAGAATTC  1154