BAC Information

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BAC

Clone NameB6Ng01-104N09
Chromosome2 (Build37)
Map Location 11,162,320 - 11,163,032
singlet/doubletsinglet
Overlap genePrkcq
Upstream geneItih5, Sfmbt2, LOC100040690, LOC100040703, LOC667192
Downstream geneLOC100040733, LOC100040898, LOC667211, Pfkfb3, Rbm17, Il2ra, Il15ra, Fbxo18, Ankrd16, EG635919, LOC667247, Itga8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104N09.bB6Ng01-104N09.g
ACCDH913020DH913021
length712924
definitionDH913020|Mus musculus domesticus DNA, BAC clone: B6Ng01-104N09, 5' end.DH913021|Mus musculus domesticus DNA, BAC clone: B6Ng01-104N09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaaccactgagtgtctccagctaatacagggagacactgaagaa
tatttggagaacaggaagcaattgtaagaggcagtgtggtagtgtacggt
agtctcggatggttgagggatctaggaaaataaatcactaaggaaaccaa
gctgagaaagctggcaatgtaagagaaaatattgactatctacagatgaa
gaagaaggaggaggaggaggaagaggaggagaaggaaagaaaagaaagga
aggaaggaaggaaggaaggaaggaaagggaagaaagggaagaaagggaag
aaagggaagaaaggaaagaaagaaaggaaggaagaaaggaagaaagaaag
aaagaaagaaagaaagaaagaaagaaagaaagaaaggaaggaaggaagaa
agaaagaaagagaaaaagtctctttagcattgataaatgtcaaagaagat
gaagttgaaggttgaaaaaccagaaacttgatcagaaggctcaatgactc
agggaaagccatgtaatagattaatcaagatataaaccaaacttttagag
tataagaatcaaaatgcacatgtccccatccctatcccagaagctatctc
ccattggtaaccatttgcaaatggaaaatctagttttcctccaagagtct
tactagagaaccaaactactcataaggggaggctgcatgcccatcactgg
ctgccggtgggt
gaattcaattaaacaaacaaacaaacaaacatattcacttaaaaatctgt
acacggtatttatgggagccttatttatcaagtaaaataaagggagcgaa
atccagaagtccatcaatagatgaatgcttaaaataagtatggacacaat
attcatgcagtgggatgtgattccgtcacaaaaagaaatgaagtcctagc
acaagcaagaacaggaatggatccaaatgctctgtgctaagtgaaaacag
gcattgatggctctaagatccacctatgaaatgtcccgatcaggtaagtt
cacagagacagaaagcagatttctaggtgccagaagccaggataagtagg
tgaaataaatgaccactagcccaacgtggtggctgtcatctgttatccta
gtacttgggaggctgaggcaggaggatcacttcaagtttgggtcccatct
gggttacacaatgtattcattactttttagagctatgataaaataccatg
gccttttggccaagtatggaagaaacagtttactttggcttatggttcta
cagggataagagcccatcatggtagagagtcatggcagcaagcagcaggc
ctgtcaacaccaataggaggctgagagattatattcctgccacattcctg
tgtgtacagagaagcagagggctcaaactgaaaatgtgatgaggctgtat
actctcaaagcctgctcagtgacatacctcttcccatggctccaccttct
aatggccccatattcttcccaagcagtactgcttctgtgttaaattgttc
aaagagccgagtctctagaggactttttttcatcaaatcaccatgcatgc
taaggtcaaaaacagcctgagctacagagtgagaatctatattggaaggg
aggaaggagaggaggggagggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_11162320_11163032
seq2: B6Ng01-104N09.b_46_756 (reverse)

seq1  CCCACCGGCAGCCAGTGCTGGGCATGCAGCCTCCCCTTATGAGTAGTTTG  50
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCCACCGGCAGCCAGTGATGGGCATGCAGCCTCCCCTTATGAGTAGTTTG  50

seq1  GTTCTCTAGTAAGACTCTTGGAGG-AAACTAGA-TTTCCATTTGCAAATG  98
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  GTTCTCTAGTAAGACTCTTGGAGGAAAACTAGATTTTCCATTTGCAAATG  100

seq1  GTTACCAATGGGAGATAGCTTCTGGGATAGGGATGGGGACATGTGCATTT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCAATGGGAGATAGCTTCTGGGATAGGGATGGGGACATGTGCATTT  150

seq1  TGATTCTTATACTCTAAAAGTTTGGTTTATATCTTGATTAATCTATTACA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTATACTCTAAAAGTTTGGTTTATATCTTGATTAATCTATTACA  200

seq1  TGGCTTTCCCTGAGTCATTGAGCCTTCTGATCAAGTTTCTGGTTTTTCAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTCCCTGAGTCATTGAGCCTTCTGATCAAGTTTCTGGTTTTTCAA  250

seq1  CCTTCAACTTCATCTTCTTTGACATTTATCAATGCTAAAGAGACTTTTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAACTTCATCTTCTTTGACATTTATCAATGCTAAAGAGACTTTTTC  300

seq1  TCTTTCTTTCTTTCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTC  348
      |||||||||||||||||||||||||    |||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTCCTTCCTTC----CTTTCTTTCTTTCTTTCTTTC  346

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTCCTTTCTTCCTTCCTTTCTTTCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTCCTTTCTTCCTTCCTTTCTTTCTT  396

seq1  TCCTTTCTTCCCTTTCTTCCCTTTCTTCCCTTTCTTCCCTTTCCTTCCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTTCCCTTTCTTCCCTTTCTTCCCTTTCTTCCCTTTCCTTCCTT  446

seq1  CCTTCCTTCCTTCCTTCCTTTCTTTTCTTTCCTTCTCCTCCTCTTCCTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTTCCTTCCTTTCTTTTCTTTCCTTCTCCTCCTCTTCCTCC  496

seq1  TCCTCCTCCTTCTTCTTCATCTGTAGATAGTCAATATTTTCTCTTACATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCTTCTTCTTCATCTGTAGATAGTCAATATTTTCTCTTACATT  546

seq1  GCCAGCTTTCTCAGCTTGGTTTCCTTAGTGATTTATTTTCCTAGATCCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTTTCTCAGCTTGGTTTCCTTAGTGATTTATTTTCCTAGATCCCT  596

seq1  CAACCATCCGAGACTACCGTACACTACCACACTGCCTCTTACAATTGCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATCCGAGACTACCGTACACTACCACACTGCCTCTTACAATTGCTT  646

seq1  CCTGTTCTCCAAATATTCTTCAGTGTCTCCCTGTCTTAGCTGGAGACACT  698
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTGTTCTCCAAATATTCTTCAGTGTCTCCCTGTATTAGCTGGAGACACT  696

seq1  CAGTGGTTAGAATTC  713
      |||||||||||||||
seq2  CAGTGGTTAGAATTC  711