BAC Information

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BAC

Clone NameB6Ng01-104N14
Chromosome9 (Build37)2 (Build37)
Map Location 110,005,352 - 110,005,489141,979,037 - 141,980,221
singlet/doubletsingletsinglet
Overlap geneDhx30
Upstream genePlxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540
Downstream geneSmarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104N14.bB6Ng01-104N14.g
ACCDH913030DH913031
length5071,167
definitionDH913030|Mus musculus domesticus DNA, BAC clone: B6Ng01-104N14, 5' end.DH913031|Mus musculus domesticus DNA, BAC clone: B6Ng01-104N14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(110,005,352 - 110,005,489)(141,979,037 - 141,980,221)
sequence
tttgtttcgatctataccccaattttaattgggttatttggtttattgat
gtctagtttcttgagttctttatatattttagatagcactctgtcaaatg
taggattgctgaagatcttttcccattctccaggcggaagtcttgtcctt
ttgatggttttctttgccttacagaagttttgaagtttcaccaggcctca
ttttttaattgttgatctcagtgtctattggttttctgttcagaaaattg
tatcctgtgccaatgcactcaaggatatttcccactttctcttctatcag
gatcagtgtatctgttttgttttgttgttgttgttttgtttgttttttgt
tttttgggtttttttttgtttttttgttttggttgttttgttttgttttg
tttttttggtttttcgagatagggtttctctgtgcagtcctggctgtcct
ggaactcactctgtagaccaggctggccttgaactcagaaatccacctgc
ctctgcc
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaacat
gctcagcatccttaatcatcagagaaatgcaaatcaaaataacccggaga
ttccatctcacactagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcaaggatgtggagaaagaggaacactcctcccttgtgaag
actttctatgtttaaatttcaaccgacttcacaagggttttctgaaaaca
aaaattacctttataagagcaatggcttttttaaaatgcattttcagact
taagactatagatgaattataatttagccaaatatagataatgttagata
tattctagagtctgctatagctggctctggaaatattaatttaatttggc
tacagtgtctttttttccaatagaatcagtataattagtgtgtttgcatt
ttacttggtgctgtcttagaagataatgtaatgaacctgtcagagatgag
aacatgcccaggcttggagtcattttataactcaaaataataagataaag
aagcacctttgaacaaattttattttgtccttaagttaaggttatatgct
ctggactaatgagtcacctggagaatattatcactgctgcatcatggtca
taaagaaatatttcacatgaacttgtacagccccactttggaaacaacgc
tatcacctccggtataatctgtgggtcaaaagcagttgtacagatgaagc
aaaagttaagtagcagggtctccatttctcagcacgagacaataacaggg
atgatgatgtggagtggttgagaactgggtgtgatgactcaactcaccac
agtgagaactcaccacagttggactctgctctcgttctgtggatcttgct
gattgaagcagtgctatacatgctctaaacgcctttctgtccctgctctt
tagggagaggtatgcaacaggggcttcttttgattatgaaggacaaattt
taagcctctatgttggtcttgatatgagaggccacatcaaatgtaagaaa
gagactagctgactcatggcttagtacatcctctgaaaataggagaatat
ttaggtaaaggagaaccaggtcagctagagaaagtgtctatattaacaaa
atttatttttgtttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_110005352_110005489
seq2: B6Ng01-104N14.b_400_559 (reverse)

seq1  GGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGT  50
      |||||||||||| |||||||||||||| |||||||||||||||||| |||
seq2  GGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGT  50

seq1  GAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGCCTCG-------  93
      ||||||||||||||||||| ||  |||||||||||||  ||||       
seq2  GAGTTCCAGGACAGCCAGGACTGCACAGAGAAACCCTATCTCGAAAAACC  100

seq1  -AAAAAACAAAACAAAACAAAAC------------AAAACAAAAAAAAA-  129
       ||||||||||||||||||||||            |||||||||||||| 
seq2  AAAAAAACAAAACAAAACAAAACAACCAAAACAAAAAAACAAAAAAAAAC  150

seq1  -CAAAAAACA  138
       |||||||||
seq2  CCAAAAAACA  160

seq1: chr2_141979037_141980221
seq2: B6Ng01-104N14.g_68_1234 (reverse)

seq1  TTTAAACAAAATAATATTTTGTTTAAATATTAGGACACATTTCTCTAGCC  50
      |||||||||||  | |||||||| | |||    ||||| |||||||||  
seq2  TTTAAACAAAAATAAATTTTGTTAATATA----GACAC-TTTCTCTAG--  43

seq1  CTGGCCTTTGTTCTTCCTCTACCTTAATATTCCTCCTATTTTCAGAGGAT  100
      ||| || | |||| |||| ||||| |||||| ||||||||||||||||||
seq2  CTGACC-TGGTTC-TCCTTTACCTAAATATT-CTCCTATTTTCAGAGGAT  90

seq1  GTACT-AGCCATGAGTCAGCTTAGTCTCTTTCTTACATTTGATTGTGGGC  149
      ||||| |||||||||||||| ||||||||||||||||||||| ||| |||
seq2  GTACTAAGCCATGAGTCAGC-TAGTCTCTTTCTTACATTTGA-TGT-GGC  137

seq1  CTCCTCATAATCAAGGCCAACAATAGAGGCCTAATATTTTGTCCTTCATA  199
      || ||||| |||||| ||||| |||||||| ||| | |||||||||||||
seq2  CT-CTCAT-ATCAAGACCAAC-ATAGAGGCTTAA-AATTTGTCCTTCATA  183

seq1  TATCAAAAGAAGCCCCTTGTTGCATACCTCTCCCTAAAGAGCAGGGACAG  249
       ||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  -ATCAAAAGAAGCCCC-TGTTGCATACCTCTCCCTAAAGAGCAGGGACAG  231

seq1  AAAGGCGTTTAGAGCATGTATAGCACTGCTTCAATCAGCAAGATCCACAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCGTTTAGAGCATGTATAGCACTGCTTCAATCAGCAAGATCCACAG  281

seq1  AACGAGAGCAGAGTCCAACTGTGGTGAGTTCTCACTGTGGTGAGTTGAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGAGCAGAGTCCAACTGTGGTGAGTTCTCACTGTGGTGAGTTGAGT  331

seq1  CATCACACCCAGTTCTCAACCACTCCACATCATCATCCCTGTTATTGTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACACCCAGTTCTCAACCACTCCACATCATCATCCCTGTTATTGTCT  381

seq1  CGTGCTGAGAAATGGAGACCCTGCTACTTAACTTTTGCTTCATCTGTACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTGAGAAATGGAGACCCTGCTACTTAACTTTTGCTTCATCTGTACA  431

seq1  ACTGCTTTTGACCCACAGATTATACCGGAGGTGATAGCGTTGTTTCCAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTTTGACCCACAGATTATACCGGAGGTGATAGCGTTGTTTCCAAA  481

seq1  GTGGGGCTGTACAAGTTCATGTGAAATATTTCTTTATGACCATGATGCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCTGTACAAGTTCATGTGAAATATTTCTTTATGACCATGATGCAG  531

seq1  CAGTGATAATATTCTCCAGGTGACTCATTAGTCCAGAGCATATAACCTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATAATATTCTCCAGGTGACTCATTAGTCCAGAGCATATAACCTTA  581

seq1  ACTTAAGGACAAAATAAAATTTGTTCAAAGGTGCTTCTTTATCTTATTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGGACAAAATAAAATTTGTTCAAAGGTGCTTCTTTATCTTATTAT  631

seq1  TTTGAGTTATAAAATGACTCCAAGCCTGGGCATGTTCTCATCTCTGACAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTATAAAATGACTCCAAGCCTGGGCATGTTCTCATCTCTGACAG  681

seq1  GTTCATTACATTATCTTCTAAGACAGCACCAAGTAAAATGCAAACACACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTACATTATCTTCTAAGACAGCACCAAGTAAAATGCAAACACACT  731

seq1  AATTATACTGATTCTATTGGAAAAAAAGACACTGTAGCCAAATTAAATTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATACTGATTCTATTGGAAAAAAAGACACTGTAGCCAAATTAAATTA  781

seq1  ATATTTCCAGAGCCAGCTATAGCAGACTCTAGAATATATCTAACATTATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCAGAGCCAGCTATAGCAGACTCTAGAATATATCTAACATTATC  831

seq1  TATATTTGGCTAAATTATAATTCATCTATAGTCTTAAGTCTGAAAATGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGGCTAAATTATAATTCATCTATAGTCTTAAGTCTGAAAATGCA  881

seq1  TTTTAAAAAAGCCATTGCTCTTATAAAGGTAATTTTTGTTTTCAGAAAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAAGCCATTGCTCTTATAAAGGTAATTTTTGTTTTCAGAAAAC  931

seq1  CCTTGTGAAGTCGGTTGAAATTTAAACATAGAAAGTCTTCACAAGGGAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGAAGTCGGTTGAAATTTAAACATAGAAAGTCTTCACAAGGGAGG  981

seq1  AGTGTTCCTCTTTCTCCACATCCTTGCCAGCATCTGCTGTCACCTGAATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCCTCTTTCTCCACATCCTTGCCAGCATCTGCTGTCACCTGAATT  1031

seq1  TTTGATCTTAGCCATTCTGACTAGTGTGAGATGGAATCTCCGGGTTATTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCTTAGCCATTCTGACTAGTGTGAGATGGAATCTCCGGGTTATTT  1081

seq1  TGATTTGCATTTCTCTGATGATTAAGGATGCTGAGCATGTTTTTCAGGTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGCATTTCTCTGATGATTAAGGATGCTGAGCATGTTTTTCAGGTG  1131

seq1  CTTCTCAGCCATTCGGTATTCCTCAGGTGAGAATTC  1185
      ||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGCCATTCGGTATTCCTCAGGTGAGAATTC  1167