BAC Information

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BAC

Clone NameB6Ng01-105A07
Chromosome2 (Build37)3 (Build37)
Map Location 142,776,687 - 142,777,69881,284,565 - 81,285,674
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105A07.bB6Ng01-105A07.g
ACCDH913152DH913153
length1,0061,108
definitionDH913152|Mus musculus domesticus DNA, BAC clone: B6Ng01-105A07, 5' end.DH913153|Mus musculus domesticus DNA, BAC clone: B6Ng01-105A07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,687 - 142,777,698)(81,284,565 - 81,285,674)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcaggacttgaagttttatcataca
gatctttcacttccttcgttagagtcacgccgagatatttatattatttg
tggctattgagaatggtgtgttttccctaatttctttctcagcctgttat
tctttg
gaattcaactgaatccttagcagattttcaaagagatgtgagaattattc
aaaggactcaaggtggtagtgaaaaacttgggagatgctacatggcttgt
agggtaaacgtccatgagctaaggaagcttggtgacaccagtggctggaa
aagggacagaaaggtgtctccccgcacctgaaaagaaaacagcattatta
ggacattgatttggtccatttcctgttcatcatttccagtatagtaaaat
aagaataaagatccatcatttttcatttcaacgccaatatttctttctta
ctgtgacaatagaaaataaagggcagaactctgagtgttcccaggttttc
gtgtgtatcaaaccagtagaatgaaatcaacatattgtctatttctttgt
tttacctctattaaagtaatcaatatttgaagataaaatagctaccacag
agcaattgagaatttttattatggaccaactgaaactggaaaacaacaga
ctcagatttgttttgttttggcctttcttattgaatatttcctaacaata
aatttttctgaaggattatgtattttcctaatattggaaaaatgggtttt
gtaaatacagcagaatgttaattttctaaagatagatatatgtgaccaca
taaattaaataaatttagtttgaacattcacaagatgtttgaagacaaaa
ggagaaatattaaaaatattctattttgatgagcatatgtttcatgtctg
cattaaaacatatttaaagatcctacttcagaaagtatttggatcttctt
ttatgcatttatttaaatttacagactttaaagacagattcagaaaagaa
caccaaaggcaaatcagctaccctgggggagctttctataagacagaaaa
accaacgtggttataagcaattattacagggaattcagagtacttatttt
agaagtctagaaattaatactgagactagccagcagcttgtgagttggct
ttctgccaagttgcgtggaatgttcaactccattgaataccggggattaa
agaaggtgatacaaaccagcattacatctagtctatctggtccttggtac
tcttaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776687_142777698
seq2: B6Ng01-105A07.b_50_601 (reverse)

seq1  GACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGG  50

seq1  TCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACA  100
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  TCACTTGATCTTCGACAAGGGAGCCAAAACCATCCAGTGGAAGAAAGACA  100

seq1  GCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGA  150

seq1  ATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTG  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTG  200

seq1  GATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGA  250

seq1  AAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAAC  300
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAAC  300

seq1  AGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCT  350

seq1  AATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAA  400
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  AATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAA  400

seq1  AAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGAT  450
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGAT  450

seq1  AGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAG  500

seq1  AAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTGG  550
      |||||||||||||||| ||||||||||||||||| ||            |
seq2  AAAATCAAATAACCCCCTTAAAAAATGGGGCTCAGAA----------CTG  540

seq1  AAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATC  600
      || |||||    |||                                   
seq2  AACAAAGA----ATTC----------------------------------  552

seq1  ATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCA  650
                                                        
seq2  --------------------------------------------------  552

seq1  AATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTT  700
                                                        
seq2  --------------------------------------------------  552

seq1  ATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAA  750
                                                        
seq2  --------------------------------------------------  552

seq1  ATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACA  800
                                                        
seq2  --------------------------------------------------  552

seq1  AATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTC  850
                                                        
seq2  --------------------------------------------------  552

seq1  TATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCC  900
                                                        
seq2  --------------------------------------------------  552

seq1  TAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGG  950
                                                        
seq2  --------------------------------------------------  552

seq1  TGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTG  1000
                                                        
seq2  --------------------------------------------------  552

seq1  AACAAAGAATTC  1012
                  
seq2  ------------  552

seq1: chr3_81284565_81285674
seq2: B6Ng01-105A07.g_70_1177 (reverse)

seq1  AATTAAGATTACAAAGCACAAGATAGCATAGATGTAATGCT-GTTTGTAT  49
      |||||||| ||| ||| || ||||||  ||||||||||||| ||||||||
seq2  AATTAAGAGTACCAAGGACCAGATAGACTAGATGTAATGCTGGTTTGTAT  50

seq1  CA-CATCTTAAATCCACGGTTACTCAATGAGTTTGAACA-TCCACGCAAC  97
      || | |||| ||||| ||| || ||||||   ||||||| ||||||||||
seq2  CACCTTCTTTAATCCCCGG-TATTCAATGGAGTTGAACATTCCACGCAAC  99

seq1  TTGACAGAAAAAGCAAACTCAACAGCTGCTGGCCTAGTCTCAGTATTAAT  147
      ||| |||  ||||| ||||||  ||||||||| |||||||||||||||| 
seq2  TTGGCAG--AAAGCCAACTCACAAGCTGCTGG-CTAGTCTCAGTATTAA-  145

seq1  TTTCTAGACTTCTTAAAATAAGTACTCTGAATTCCCTGTAATTATTGCTT  197
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  TTTCTAGACTTC-TAAAATAAGTACTCTGAATTCCCTGTAATAATTGCTT  194

seq1  AT-ACCACGTT-GTTTTTCTGTCTTATTAGAAAGCT-CCACAGGGTAGCT  244
      || |||||||| |||||||||||||| ||||||||| || ||||||||||
seq2  ATAACCACGTTGGTTTTTCTGTCTTA-TAGAAAGCTCCCCCAGGGTAGCT  243

seq1  GATTTGCCTTTGGTGTTCTTTTCTGAATCTGTCTTTAAAGTCTGTAAATT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCCTTTGGTGTTCTTTTCTGAATCTGTCTTTAAAGTCTGTAAATT  293

seq1  TAAATAAATGCATAAAAGAAGATCCAAATACTTTCTGAAGTAGGATCTTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATGCATAAAAGAAGATCCAAATACTTTCTGAAGTAGGATCTTT  343

seq1  AAATATGTTTTTAATGCAGACATGAAACATATGCTCATCAAAATAGAATA  394
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATG-TTTTAATGCAGACATGAAACATATGCTCATCAAAATAGAATA  392

seq1  TTTTTAATATTTCTCCTTTTGTCTTCAAACATCTTGTGAATGTTCAAACT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATATTTCTCCTTTTGTCTTCAAACATCTTGTGAATGTTCAAACT  442

seq1  AAATTTATTTAATTTATGTGGTCACATATATCTATCTTTAGAAAATTAAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATTTAATTTATGTGGTCACATATATCTATCTTTAGAAAATTAAC  492

seq1  ATTCTGCTGTATTTACAAAACCCATTTTTCCAATATTAGGAAAATACATA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCTGTATTTACAAAACCCATTTTTCCAATATTAGGAAAATACATA  542

seq1  ATCCTTCAGAAAAATTTATTGTTAGGAAATATTCAATAAGAAAGGCCAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCAGAAAAATTTATTGTTAGGAAATATTCAATAAGAAAGGCCAAA  592

seq1  ACAAAACAAATCTGAGTCTGTTGTTTTCCAGTTTCAGTTGGTCCATAATA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAATCTGAGTCTGTTGTTTTCCAGTTTCAGTTGGTCCATAATA  642

seq1  AAAATTCTCAATTGCTCTGTGGTAGCTATTTTATCTTCAAATATTGATTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTCAATTGCTCTGTGGTAGCTATTTTATCTTCAAATATTGATTA  692

seq1  CTTTAATAGAGGTAAAACAAAGAAATAGACAATATGTTGATTTCATTCTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATAGAGGTAAAACAAAGAAATAGACAATATGTTGATTTCATTCTA  742

seq1  CTGGTTTGATACACACGAAAACCTGGGAACACTCAGAGTTCTGCCCTTTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTGATACACACGAAAACCTGGGAACACTCAGAGTTCTGCCCTTTA  792

seq1  TTTTCTATTGTCACAGTAAGAAAGAAATATTGGCGTTGAAATGAAAAATG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATTGTCACAGTAAGAAAGAAATATTGGCGTTGAAATGAAAAATG  842

seq1  ATGGATCTTTATTCTTATTTTACTATACTGGAAATGATGAACAGGAAATG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCTTTATTCTTATTTTACTATACTGGAAATGATGAACAGGAAATG  892

seq1  GACCAAATCAATGTCCTAATAATGCTGTTTTCTTTTCAGGTGCGGGGAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAATCAATGTCCTAATAATGCTGTTTTCTTTTCAGGTGCGGGGAGA  942

seq1  CACCTTTCTGTCCCTTTTCCAGCCACTGGTGTCACCAAGCTTCCTTAGCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTCTGTCCCTTTTCCAGCCACTGGTGTCACCAAGCTTCCTTAGCT  992

seq1  CATGGACGTTTACCCTACAAGCCATGTAGCATCTCCCAAGTTTTTCACTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACGTTTACCCTACAAGCCATGTAGCATCTCCCAAGTTTTTCACTA  1042

seq1  CCACCTTGAGTCCTTTGAATAATTCTCACATCTCTTTGAAAATCTGCTAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTGAGTCCTTTGAATAATTCTCACATCTCTTTGAAAATCTGCTAA  1092

seq1  GGATTCAGTTGAATTC  1110
      ||||||||||||||||
seq2  GGATTCAGTTGAATTC  1108