BAC Information

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BAC

Clone NameB6Ng01-105C04
Chromosome2 (Build37)
Map Location 94,021,990 - 94,147,167
singlet/doubletdoublet
Overlap geneE530001K10Rik, Ttc17
Upstream geneTrp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82, Alx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3, Hsd17b12
Downstream geneItpa-ps1, Api5, LOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105C04.bB6Ng01-105C04.g
ACCDH913238DH913239
length760638
definitionDH913238|Mus musculus domesticus DNA, BAC clone: B6Ng01-105C04, 5' end.DH913239|Mus musculus domesticus DNA, BAC clone: B6Ng01-105C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,021,990 - 94,022,749)(94,146,526 - 94,147,167)
sequence
gaattctgtactagtaatttataacaaaaaccaagcaaaatgctttctct
cccccccccccacacacacctctctccctctctttaaccaaccaacagat
ctttttaaataaaaatttctaattaattactttgatttaacttaatacta
ctttctgtcatttttgttctctctgttatttaggataagcaaagttgaag
tacttattgttacgctctgactaaaatgctccactgtcaactaataaaga
atagaaaaatattttcttgcctaaagaaaaaagtttgaatgttaaaaaaa
atctcaaagaaagaaagaagagaaagaaaggagaaagagagagagagaga
gagagaaaatcccacttttttttttaggaggtataatgcgtgatattttc
ccacaagaaaagaaaaccctaagtaaatgattatggctactcctgccctg
tgataaatcacaatgggacaaaggatatttgaatttctgagttttaatgt
tagacagcaaagattgcaaataatttaatcaatgctggaaactttttttt
ttttaatcgtgttttaaattttgtcaaaaaggggccacaagtttgcagtt
tctcaagctgcagctcttctgtattttattctgccatgaacacgtttggg
atgaaagggtcttatttaggactccagttttaaaatccctcttaagacat
tttatcatttactaaccttatctgccttcaaagttttctaataaataaca
atgtctgtct
gaattcaaatccccagcacccacataaaaaactagatgtggccatgcaca
cctacagtgccatggggacagaggcagaattgctgagctgattgcctgct
ggaagttgtctaaggaaataaggttgaaaataaagcctgaaatcccctca
tgcctcagtgcacaggggtgtgtgtgtgtgtgtgtgtgtgtacatatatg
tgtgtacatatatgtgtgtgtatatatgtacatatatgtgtgtatatata
catacatatattaaatcatgagagttgccaggcttctacacactcactgc
acacatgcagaataaataaataaataaaggtgtacttacagctttttgtg
aatacttttgaaaacataacttaaatatattcctttaaaaggttttacct
aatctgatttaagaagtaaagatacacagttattctgaaaagtcttaata
ctctcaaatcaattgagcattgtgttaaaaaaatgtagtttcaccaagaa
atatctacagatttaattctttcaaagttttggtaaatacttcaatccta
acaaatagactttggagttgagaaattaactattttctgattacttcttt
agttcaaacatttcccttaaacaaactggatacttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_94021990_94022749
seq2: B6Ng01-105C04.b_39_798

seq1  GAATTCTGTACTAGTAATTTATAACAAAAACCAAGCAAAATGCTTTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTACTAGTAATTTATAACAAAAACCAAGCAAAATGCTTTCTCT  50

seq1  CCCCCCCCCCCACACACACCTCTCTCCCTCTCTTTAACCAACCAACAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCACACACACCTCTCTCCCTCTCTTTAACCAACCAACAGAT  100

seq1  CTTTTTAAATAAAAATTTCTAATTAATTACTTTGATTTAACTTAATACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAATAAAAATTTCTAATTAATTACTTTGATTTAACTTAATACTA  150

seq1  CTTTCTGTCATTTTTGTTCTCTCTGTTATTTAGGATAAGCAAAGTTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTCATTTTTGTTCTCTCTGTTATTTAGGATAAGCAAAGTTGAAG  200

seq1  TACTTATTGTTACGCTCTGACTAAAATGCTCCACTGTCAACTAATAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATTGTTACGCTCTGACTAAAATGCTCCACTGTCAACTAATAAAGA  250

seq1  ATAGAAAAATATTTTCTTGCCTAAAGAAAAAAGTTTGAATGTTAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAATATTTTCTTGCCTAAAGAAAAAAGTTTGAATGTTAAAAAAA  300

seq1  ATCTCAAAGAAAGAAAGAAGAGAAAGAAAGGAGAAAGAGAGAGAGAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAAGAAAGAAAGAAGAGAAAGAAAGGAGAAAGAGAGAGAGAGAGA  350

seq1  GAGAGAAAATCCCACTTTTTTTTTTAGGAGGTATAATGCGTGATATTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAATCCCACTTTTTTTTTTAGGAGGTATAATGCGTGATATTTTC  400

seq1  CCACAAGAAAAGAAAACCCTAAGTAAATGATTATGGCTACTCCTGCCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGAAAAGAAAACCCTAAGTAAATGATTATGGCTACTCCTGCCCTG  450

seq1  TGATAAATCACAATGGGACAAAGGATATTTGAATTTCTGAGTTTTAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATCACAATGGGACAAAGGATATTTGAATTTCTGAGTTTTAATGT  500

seq1  TAGACAGCAAAGATTGCAAATAATTTAATCAATGCTGGAAACTTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGCAAAGATTGCAAATAATTTAATCAATGCTGGAAACTTTTTTTT  550

seq1  TTTTAATCGTGTTTTAAATTTTGTCAAAAAGGGGCCACAAGTTTGCAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCGTGTTTTAAATTTTGTCAAAAAGGGGCCACAAGTTTGCAGTT  600

seq1  TCTCAAGCTGCAGCTCTTCTGTATTTTATTCTGCCATGAACACGTTTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGCTGCAGCTCTTCTGTATTTTATTCTGCCATGAACACGTTTGGG  650

seq1  ATGAAAGGGTCTTATTTAGGACTCCAGTTTTAAAAT-CCTCTTAAGACAT  699
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGAAAGGGTCTTATTTAGGACTCCAGTTTTAAAATCCCTCTTAAGACAT  700

seq1  TTTATCATTAACTAACCTTATCTGCCTTCACAAGTTTTCTAATAAATAAC  749
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  TTTATCATTTACTAACCTTATCTGCCTTCA-AAGTTTTCTAATAAATAAC  749

seq1  AATGTCTGTCT  760
      |||||||||||
seq2  AATGTCTGTCT  760

seq1: chr2_94146526_94147167
seq2: B6Ng01-105C04.g_71_708 (reverse)

seq1  TTCAAGTGTCCAGTTTTGTTTTCAGGACTATGTTTGACCTAAAGAAGTAA  50
      ||||||| ||||||||   ||| |||   |||||||| ||||||||||||
seq2  TTCAAGTATCCAGTTT--GTTTAAGGGAAATGTTTGAACTAAAGAAGTAA  48

seq1  TCAGAAAATTGTTTCTTTTCTCTTACTCCAAAGTCTGTTTGTTGGGATTG  100
      ||||||||| | ||  ||||||  |||||||||||| |||||| ||||||
seq2  TCAGAAAATAG-TTAATTTCTC-AACTCCAAAGTCTATTTGTTAGGATTG  96

seq1  AAGTATTTACCAAAACTTTGGTAGAATT-CCTCTGTATGATATTTCTTGG  149
      ||||||||||||||||||||  ||||||   |||||| ||||||||||||
seq2  AAGTATTTACCAAAACTTTGAAAGAATTAAATCTGTA-GATATTTCTTGG  145

seq1  TGAAAATACATTTTTTTAACCCACTGCTCAATTTATTTGAGAGTATTAAG  199
      ||||| |||||||||||||| || ||||||||| ||||||||||||||||
seq2  TGAAACTACATTTTTTTAACACAATGCTCAATTGATTTGAGAGTATTAAG  195

seq1  ACTTTTCAGATTATTTTTGTTTCTTTTCTTCTTAAATCAGATTAGGTAAA  249
      |||||||||| ||  | ||| ||||| |||||||||||||||||||||||
seq2  ACTTTTCAGAATAACTGTGTATCTTTACTTCTTAAATCAGATTAGGTAAA  245

seq1  ACATTTTAAAGGAATTTATTTAAGTTATGTTTTCAAATGTATTCACATAA  299
      || |||||||||||| ||||||||||||||||||||| ||||||||| ||
seq2  ACCTTTTAAAGGAATATATTTAAGTTATGTTTTCAAAAGTATTCACAAAA  295

seq1  AGCTGTAAGTACACCTTTATTTATTTATTTAATCTGCATGTGTGCAGTGA  349
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGCTGTAAGTACACCTTTATTTATTTATTTATTCTGCATGTGTGCAGTGA  345

seq1  GTGTGTAGAAGTGTGGCATATATGCTTATGTAATATATGTATGTATATAT  399
      |||||||||||  |||||  | |  | || ||||||||||||||||||||
seq2  GTGTGTAGAAGCCTGGCAACTCTCATGATTTAATATATGTATGTATATAT  395

seq1  ACACACATATATGTACATATATACACACACATATATGTACACACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATATATGTACATATATACACACACATATATGTACACACATATAT  445

seq1  GTACACACACACACACACACACACACCCCTGTGCACTGAGGCATGAGGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACACACACACACACACACACACCCCTGTGCACTGAGGCATGAGGGG  495

seq1  ATTTCAGGCTTTATTTTCAACCTTATTTCCTTAGACAACTTCCAGCAGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGCTTTATTTTCAACCTTATTTCCTTAGACAACTTCCAGCAGGC  545

seq1  AATCAGCTCAGCAATTCTGCCTCTGTCCCCATGGCACTGTAGGTGTGCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCTCAGCAATTCTGCCTCTGTCCCCATGGCACTGTAGGTGTGCAT  595

seq1  GGCCACATCTAGTTTTTTATGTGGGTGCTGGGGATTTGAATTC  642
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACATCTAGTTTTTTATGTGGGTGCTGGGGATTTGAATTC  638