BAC Information

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BAC

Clone NameB6Ng01-105C09
Chromosome2 (Build37)
Map Location 28,375,473 - 28,502,333
singlet/doubletdoublet
Overlap geneRalgds, Cel, Gtf3c5, Gfi1b, Tsc1
Upstream geneWdr5, Rxra, Col5a1, Fcnb, Olfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1
Downstream gene1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2, Crsp8, Rapgef1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105C09.bB6Ng01-105C09.g
ACCDH913248DH913249
length1,011905
definitionDH913248|Mus musculus domesticus DNA, BAC clone: B6Ng01-105C09, 5' end.DH913249|Mus musculus domesticus DNA, BAC clone: B6Ng01-105C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,375,473 - 28,376,488)(28,501,427 - 28,502,333)
sequence
gaattccaggacagccagggttacacagagaaaccctgtctcaaaaaaca
aaataaaacaaaacaaaagttcaaactgggagggcagagaagaaatgatt
ttgagtccttggggttctccccacctgaaagaaatccattgcaaaggaat
ccacccttgcctgactgtggcccagccctgattgtcacaaggagggggag
gtgctagcaggtctggcttgtctggaagtcagaagggaggaggatgaagc
caggcagatgagaatcctgacttagccctttaaccccaagccttcatgac
ctcccctgcaggcttaaagacttaaagtgtatatgagggtgctcagacac
ctgacaccacacaagcaggccttccaaaggtacagggagtatctgaaggc
agatagccacaggattctccagaagggacagctcttagaacaggcaacag
gcaaggacacttgcaggctctgaattgaatccacaaatattcccacgcag
accccgggaggtggggtctattgtctgagccatctgacgtggccttgccg
tcatccactgcttccccggggccagtttcaggcctctgaactgaacatcc
atgctcaagattggactttaattttaaaagcaaggtggttcacctggctt
ggagcagccctgagtggccagagtgacaaccagaggctggagggagcatg
tgggcaggtggtgtcccctgggaaggggctgagattcgtattctcaacat
ctttgggattctaagagtatttccttcctagcaaccagggctgggaaatc
ccttcacagagccctggcttcctgcactgctcccggcagccctgccagga
acaggtgctgggcacagaagctatagatgtaggcactgagggagggagcc
accgggtcacagtctgtccttgtggggtagttgtgtggggaaaatgctgt
gccttccaggcctcttccaggtctctgggccttcagacggcaccattgct
gcctggtgggg
gaattcctattgaaacacagagaatccaacacagtttagctagtgtgaaa
aagagtcagcctcctcctccatccccccacacacacaccagcagcagcag
gcttggtccccagtacgagaacagtttggaaagtagtaggagatcttgga
ggagagttgtcactgagggagggtttgaggtttcaaaagtccacaccatt
gccagttaacagttagcccctcttatcatgttctttctcattcatagtct
ctctccctcacctctccctcctctctccctctcttgtgcttgtggatcag
atgtaagcttgcctgcatgctgccatgctccgctacatggtattcatata
cccgacttctctggaaccatgagccccaaattaaatgctttctagtataa
atgcccttagtcaaataaaaagtaactaagaacctggagaagaatgtgcc
tggaaggcaggtgtatctaagtttgatcccaggacccatttaaagctagg
tgcagtggcacacatatagaccagttctaggggtagagggaggcacccta
aggtcaatggtcagcacgtctagcttaacgggcagttccaggccagtgac
agaccctgtctctgagatggtgtccctgagatgacacctgaggttatact
ctgagctctacatgtgtatgtgtacacacatgcacgcagacatgcacaca
ataagtaaatggtggggctagtaatgcttgcccagtttgatagagtcctt
acctgccatgtaccaagtcccttcattcaactcccagtattgcataaaat
aaatacatcagaaaattaaaaagtagcctttccttcctaccagttttttt
ttttttttaagttgttaaaaagcccaagtggatagggtttgctggggggt
attgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_28375473_28376488
seq2: B6Ng01-105C09.b_44_1054

seq1  GAATTCCAGGACAGCCAGGGTTACACAGAGAAACCCTGTCTCAAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGTTACACAGAGAAACCCTGTCTCAAAAAACA  50

seq1  AAATAAAACAAAACAAAAGTTCAAACTGGGAGGGCAGAGAAGAAATGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACAAAACAAAAGTTCAAACTGGGAGGGCAGAGAAGAAATGATT  100

seq1  TTGAGTCCTTGGGGTTCTCCCCACCTGAAAGAAATCCATTGCAAAGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCCTTGGGGTTCTCCCCACCTGAAAGAAATCCATTGCAAAGGAAT  150

seq1  CCACCCTTGCCTGACTGTGGCCCAGCCCTGATTGTCACAAGGAGGGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTTGCCTGACTGTGGCCCAGCCCTGATTGTCACAAGGAGGGGGAG  200

seq1  GTGCTAGCAGGTCTGGCTTGTCTGGAAGTCAGAAGGGAGGAGGATGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGCAGGTCTGGCTTGTCTGGAAGTCAGAAGGGAGGAGGATGAAGC  250

seq1  CAGGCAGATGAGAATCCTGACTTAGCCCTTTAACCCCAAGCCTTCATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGATGAGAATCCTGACTTAGCCCTTTAACCCCAAGCCTTCATGAC  300

seq1  CTCCCCTGCAGGCTTAAAGACTTAAAGTGTATATGAGGGTGCTCAGACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTGCAGGCTTAAAGACTTAAAGTGTATATGAGGGTGCTCAGACAC  350

seq1  CTGACACCACACAAGCAGGCCTTCCAAAGGTACAGGGAGTATCTGAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACCACACAAGCAGGCCTTCCAAAGGTACAGGGAGTATCTGAAGGC  400

seq1  AGATAGCCACAGGATTCTCCAGAAGGGACAGCTCTTAGAACAGGCAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCCACAGGATTCTCCAGAAGGGACAGCTCTTAGAACAGGCAACAG  450

seq1  GCAAGGACACTTGCAGGCTCTGAATTGAATCCACAAATATTCCCACGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGACACTTGCAGGCTCTGAATTGAATCCACAAATATTCCCACGCAG  500

seq1  ACCCCGGGAGGTGGGGTCTATTGTCTGAGCCATCTGACGTGGCCTTGCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGGGAGGTGGGGTCTATTGTCTGAGCCATCTGACGTGGCCTTGCCG  550

seq1  TCATCCACTGCTTCCCCGGGGCCAGTTTCAGGCCTCTGAACTGAACATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCACTGCTTCCCCGGGGCCAGTTTCAGGCCTCTGAACTGAACATCC  600

seq1  ATGCTCAAGATTGGACTTTAATTTTAAAAGCAAGGTGGTTCACCTGGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCAAGATTGGACTTTAATTTTAAAAGCAAGGTGGTTCACCTGGCTT  650

seq1  GGAGCAGCCCTGAGTGGCCAGAGTGACAACCAGAGGCTGGAGGGAGCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGCCCTGAGTGGCCAGAGTGACAACCAGAGGCTGGAGGGAGCATG  700

seq1  TGGGCAGGTGGTGTCCCCTGGGAAGGGGCTGAGATTCGTATTCTCAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGGTGGTGTCCCCTGGGAAGGGGCTGAGATTCGTATTCTCAACAT  750

seq1  CTTTGGGATTCTAAGAGTATTTCCTTCCTAGCAACCAGGGCTGGGAAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGATTCTAAGAGTATTTCCTTCCTAGCAACCAGGGCTGGGAAATC  800

seq1  CCTTCACAGAGCCCTGGCTTCCTGCACTGCTCCCGGCAGCCCTGCCAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACAGAGCCCTGGCTTCCTGCACTGCTCCCGGCAGCCCTGCCAGGA  850

seq1  ACAGGTGCTGGGCACAGAAGCTATAGATGTAGGCACTGAGGGAGGGAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGCTGGGCACAGAAGCTATAGATGTAGGCACTGAGGGAGGGAGCC  900

seq1  ACCGGGTCACAGTCTGTCCTTGTGGGGTAGTTGTGTGGGGAAAATGCTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGTCACAGTCTGTCCTTGTGGGGTAGTTGTGTGGGGAAAATGCTGT  950

seq1  GCCTTTCAGGCCTCTTCCCAGGTCTCTGGGCCTTCAAGACGGCATCGTTT  1000
      ||||| |||||||||| |||||||||||||||||| |||||||| |  ||
seq2  GCCTTCCAGGCCTCTT-CCAGGTCTCTGGGCCTTC-AGACGGCA-CCATT  997

seq1  GCTGCCTTGTGTGGGG  1016
      ||||||| ||| ||  
seq2  GCTGCCTGGTGGGG--  1011

seq1: chr2_28501427_28502333
seq2: B6Ng01-105C09.g_67_971 (reverse)

seq1  ACAAAACCCCCCAGCAAACCCTATACACTTGGGCTTTTTCAACAACTTAA  50
      |||| ||||||||||||||||||| |||||||||||||| ||||||||||
seq2  ACAATACCCCCCAGCAAACCCTATCCACTTGGGCTTTTT-AACAACTTAA  49

seq1  AAAAAAAAAAAAACTGGTAGGAAGGAAAGGCCTACTTTTTAAATTTTCTG  100
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  AAAAAAAAAAAAACTGGTAGGAAGGAAAGG-CTACTTTTT-AATTTTCTG  97

seq1  ATGTATTTATTTTATTGCAATACTGGGAGTTGAATGAAGGGACTTGGTAC  150
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATGTATTTATTTTA-TGCAATACTGGGAGTTGAATGAAGGGACTTGGTAC  146

seq1  ATGGCAGGTAAGGACTCTATC-AACTGGGC-AGCATTACTAGCCCCACCA  198
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  ATGGCAGGTAAGGACTCTATCAAACTGGGCAAGCATTACTAGCCCCACCA  196

seq1  TTTACTTATTGTGTGCATGTCTGCGTGCATGTGTGTACACATACACATGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTATTGTGTGCATGTCTGCGTGCATGTGTGTACACATACACATGT  246

seq1  AGAGGTCAGAGTATAACCTCAGGTGTCATCTCAGGGACACCATCTCAGAG  298
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCAGAGTATAACCTCAGGTGTCATCTCAGGGACACCATCTCAGAG  296

seq1  ACAGGGTCTGTCACTGGCCTGGAACTGCCCGTTAAGCTAGACGTGCTGAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTCTGTCACTGGCCTGGAACTGCCCGTTAAGCTAGACGTGCTGAC  346

seq1  CATTGACCTTAGGGTGCCTCCCTCTACCCCTAGAACTGGTCTATATGTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACCTTAGGGTGCCTCCCTCTACCCCTAGAACTGGTCTATATGTGT  396

seq1  GCCACTGCACCTAGCTTTAAATGGGTCCTGGGATCAAACTTAGATACACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGCACCTAGCTTTAAATGGGTCCTGGGATCAAACTTAGATACACC  446

seq1  TGCCTTCCAGGCACATTCTTCTCCAGGTTCTTAGTTACTTTTTATTTGAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCCAGGCACATTCTTCTCCAGGTTCTTAGTTACTTTTTATTTGAC  496

seq1  TAAGGGCATTTATACTAGAAAGCATTTAATTTGGGGCTCATGGTTCCAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGCATTTATACTAGAAAGCATTTAATTTGGGGCTCATGGTTCCAGA  546

seq1  GAAGTCGGGTATATGAATACCATGTAGCGGAGCATGGCAGCATGCAGGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCGGGTATATGAATACCATGTAGCGGAGCATGGCAGCATGCAGGCA  596

seq1  AGCTTACATCTGATCCACAAGCACAAGAGAGGGAGAGAGGAGGGAGAGGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACATCTGATCCACAAGCACAAGAGAGGGAGAGAGGAGGGAGAGGT  646

seq1  GAGGGAGAGAGACTATGAATGAGAAAGAACATGATAAGAGGGGCTAACTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGAGAGACTATGAATGAGAAAGAACATGATAAGAGGGGCTAACTG  696

seq1  TTAACTGGCAATGGTGTGGACTTTTGAAACCTCAAACCCTCCCTCAGTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGGCAATGGTGTGGACTTTTGAAACCTCAAACCCTCCCTCAGTGA  746

seq1  CAACTCTCCTCCAAGATCTCCTACTACTTTCCAAACTGTTCTCGTACTGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTCCTCCAAGATCTCCTACTACTTTCCAAACTGTTCTCGTACTGG  796

seq1  GGACCAAGCCTGCTGCTGCTGGTGTGTGTGTGGGGGGATGGAGGAGGAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAAGCCTGCTGCTGCTGGTGTGTGTGTGGGGGGATGGAGGAGGAGG  846

seq1  CTGACTCTTTTTCACACTAGCTAAACTGTGTTGGATTCTCTGTGTTTCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGACTCTTTTTCACACTAGCTAAACTGTGTTGGATTCTCTGTGTTTCAA  896

seq1  TAGGAATTC  907
      |||||||||
seq2  TAGGAATTC  905