BAC Information

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BAC

Clone NameB6Ng01-105J12
Chromosome2 (Build37)
Map Location 83,880,576 - 83,911,977
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119
Downstream geneLOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105J12.bB6Ng01-105J12.g
ACCDH913573DH913574
length1,208229
definitionDH913573|Mus musculus domesticus DNA, BAC clone: B6Ng01-105J12, 5' end.DH913574|Mus musculus domesticus DNA, BAC clone: B6Ng01-105J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,880,576 - 83,881,790)(83,911,749 - 83,911,977)
sequence
gaattcagctgcttaaataaagcaacattcctttagccttcctgtcctta
tgcaattagagaaaatgccacatgcattcataattttcaattttttatca
aaataatatctagtaagcatttagtcaaattctcttgttaatattatgtt
tatacacttggtgtttacttatgaaagaaatttaggttggggtttactgg
aaagattatagtttctttgatatgcacatgaaagtactttatgagacttc
atttttaatacagggaagagctatatatttgactgaaaaacagtcaaatt
atgatgatatccacaaatatgacttatgaaatgtatactaagtatctaaa
agccaaaataatgtaatatattgttatttcatagcactataaaaattaaa
attatattattaattctgggtttagagaatattgactgaaatagaaatga
taagtctttcattacattttgaatatggaaaaacaaatattaccaatata
tttttattatcttcaataaaaatttatgcaacttactgtgttctgtgtaa
gaaacagcttttgtaaaatttatctactacctaatattgtaaaatattga
caggttagacttagtcttttattacatgacattattattgattaccttca
tattctaggcatgagacacggttgtcgatgagaatagcatgggaacatct
acatcaaatgtgatcccattaaagcttttatgattttatgtatatatcct
atattcacatttatatgtaatttaaaaacaaaggatgaaataacttccta
ttttcttcaattccatctaaaggttttaacaggatattcggaagcacaga
gtaataaggaagaattggaggatcctttccagtctgtggctcaagtgaat
attaaagagtgtagtgtattatcagcagaggagcagagaaaggaactgca
aagttgtgtggcaagctgaagcttttgatgttagttgagaagaaattgct
aagtagggagtagaaaaaatgggagaatttttcatctataacctcctgag
tcagcaaggtaaaccttcctgcgacaattattatttgtttaatatcgagt
agaattcataaatttggagcttgctgggctcctggtgaatcccgagggag
tagacaaaaaccttatgtgtcatggtgagtcaggcttgatcagatacgtt
agcctgtg
ccatttttaatttctgtgttttcttttgtcacagaacctccagggttcct
tacaattgtgagggagccaacactgtagagaaggctttttttttttctgg
cctgacatatttttgagtgggaaggttatccagaaagcaaaagttacgaa
gagaaaagaaaagagaagagaagagaagagaagagaagaggagaggagag
gagaggagaggagaggagaggagaggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_83880576_83881790
seq2: B6Ng01-105J12.b_47_1254

seq1  GAATTCAGCTGCTTAAATAAAGCAACATTCCTTTAGCCTTCCTGTCCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGCTTAAATAAAGCAACATTCCTTTAGCCTTCCTGTCCTTA  50

seq1  TGCAATTAGAGAAAATGCCACATGCATTCATAATTTTCAATTTTTTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTAGAGAAAATGCCACATGCATTCATAATTTTCAATTTTTTATCA  100

seq1  AAATAATATCTAGTAAGCATTTAGTCAAATTCTCTTGTTAATATTATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATCTAGTAAGCATTTAGTCAAATTCTCTTGTTAATATTATGTT  150

seq1  TATACACTTGGTGTTTACTTATGAAAGAAATTTAGGTTGGGGTTTACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACTTGGTGTTTACTTATGAAAGAAATTTAGGTTGGGGTTTACTGG  200

seq1  AAAGATTATAGTTTCTTTGATATGCACATGAAAGTACTTTATGAGACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTATAGTTTCTTTGATATGCACATGAAAGTACTTTATGAGACTTC  250

seq1  ATTTTTAATACAGGGAAGAGCTATATATTTGACTGAAAAACAGTCAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAATACAGGGAAGAGCTATATATTTGACTGAAAAACAGTCAAATT  300

seq1  ATGATGATATCCACAAATATGACTTATGAAATGTATACTAAGTATCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGATATCCACAAATATGACTTATGAAATGTATACTAAGTATCTAAA  350

seq1  AGCCAAAATAATGTAATATATTGTTATTTCATAGCACTATAAAAATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAATAATGTAATATATTGTTATTTCATAGCACTATAAAAATTAAA  400

seq1  ATTATATTATTAATTCTGGGTTTAGAGAATATTGACTGAAATAGAAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTATTAATTCTGGGTTTAGAGAATATTGACTGAAATAGAAATGA  450

seq1  TAAGTCTTTCATTACATTTTGAATATGGAAAAACAAATATTACCAATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTTTCATTACATTTTGAATATGGAAAAACAAATATTACCAATATA  500

seq1  TTTTTATTATCTTCAATAAAAATTTATGCAACTTACTGTGTTCTGTGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTATCTTCAATAAAAATTTATGCAACTTACTGTGTTCTGTGTAA  550

seq1  GAAACAGCTTTTGTAAAATTTATCTACTACCTAATATTGTAAAATATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGCTTTTGTAAAATTTATCTACTACCTAATATTGTAAAATATTGA  600

seq1  CAGGTTAGACTTAGTCTTTTATTACATGACATTATTATTGATTACCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTAGACTTAGTCTTTTATTACATGACATTATTATTGATTACCTTCA  650

seq1  TATTCTAGGCATGAGACACGGTTGTCGATGAGAATAGCATGGGAACATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAGGCATGAGACACGGTTGTCGATGAGAATAGCATGGGAACATCT  700

seq1  ACATCAAATGTGATCCCATTAAAGCTTTTATGATTTTATGTATATATCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAATGTGATCCCATTAAAGCTTTTATGATTTTATGTATATATCCT  750

seq1  ATATTCACATTTATATGTAATTTAAAAACAAAGGATGAAATAACTTCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCACATTTATATGTAATTTAAAAACAAAGGATGAAATAACTTCCTA  800

seq1  TTTTCTTCAATTCCATCTAAAGGTTTTAACAGGATATTCGGAAGCACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCAATTCCATCTAAAGGTTTTAACAGGATATTCGGAAGCACAGA  850

seq1  GTAATAAGGAAGAATTGGAGGATCC-TTCCAGTCTGTGGCTCAAGTGAAT  899
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTAATAAGGAAGAATTGGAGGATCCTTTCCAGTCTGTGGCTCAAGTGAAT  900

seq1  ATTAAAGAGTGTAGTGTATTATCAGGCAGAGGAGCAGAGAAAGGAACTGC  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATTAAAGAGTGTAGTGTATTATCA-GCAGAGGAGCAGAGAAAGGAACTGC  949

seq1  AAAGTTGTGTGGCAAGCTGAAGCCTTTTGATGTTAGTTGAGAAGAAATTG  999
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAGTTGTGTGGCAAGCTGAAG-CTTTTGATGTTAGTTGAGAAGAAATTG  998

seq1  CTAAGTAGGGAGTAGAAAAAATGGGAGAATTTTTCATCTATAAACCTCCT  1049
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTAAGTAGGGAGTAGAAAAAATGGGAGAATTTTTCATCTAT-AACCTCCT  1047

seq1  GAGTCAGCAAGGTAAACCTTCCTGCGACAATTATTATTTGTTTAATATCG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGCAAGGTAAACCTTCCTGCGACAATTATTATTTGTTTAATATCG  1097

seq1  AGTAGAATTCATTAATTTTGGAGGCTTTGCTGGGCTC--TGTGAATACCA  1147
      ||||||||||| ||| |||||||   |||||||||||   |||||| || 
seq2  AGTAGAATTCA-TAAATTTGGAG--CTTGCTGGGCTCCTGGTGAATCCCG  1144

seq1  CGAGGAGTAGGACAAAAACATTATGTGTCATGTAGAGTCAGTCTGGGATC  1197
       | |||||| ||||||||| ||||||||||||  ||||||| ||  ||||
seq2  AG-GGAGTA-GACAAAAACCTTATGTGTCATGGTGAGTCAGGCT-TGATC  1191

seq1  AGATCACGTAAGCCTGTG  1215
      |||| |||| ||||||||
seq2  AGAT-ACGTTAGCCTGTG  1208

seq1: chr2_83911749_83911977
seq2: B6Ng01-105J12.g_75_303 (reverse)

seq1  TCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTTCTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTTCTCTTC  50

seq1  TCTTCTCTTCTCTTCTCTTTTCTTTTCTCTTCGTAACTTTTGCTTTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTTCTCTTCTCTTTTCTTTTCTCTTCGTAACTTTTGCTTTCTGG  100

seq1  ATAACCTTCCCACTCAAAAATATGTCAGGCCAGAAAAAAAAAAAGCCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTTCCCACTCAAAAATATGTCAGGCCAGAAAAAAAAAAAGCCTTC  150

seq1  TCTACAGTGTTGGCTCCCTCACAATTGTAAGGAACCCTGGAGGTTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGTGTTGGCTCCCTCACAATTGTAAGGAACCCTGGAGGTTCTGTG  200

seq1  ACAAAAGAAAACACAGAAATTAAAAATGG  229
      |||||||||||||||||||||||||||||
seq2  ACAAAAGAAAACACAGAAATTAAAAATGG  229