BAC Information

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BAC

Clone NameB6Ng01-105K12
Chromosome2 (Build37)
Map Location 58,517,024 - 58,633,188
singlet/doubletdoublet
Overlap geneLOC674940, Upp2
Upstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1
Downstream geneBC062650, Pkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105K12.bB6Ng01-105K12.g
ACCDH913616DH913617
length1,1601,058
definitionDH913616|Mus musculus domesticus DNA, BAC clone: B6Ng01-105K12, 5' end.DH913617|Mus musculus domesticus DNA, BAC clone: B6Ng01-105K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,632,026 - 58,633,188)(58,517,024 - 58,518,085)
sequence
gaattcacatcgaactgtcagcaacacttgttgggtttctcttcagaact
gtgtagtgtgtgacagcccctccccctcccttgcgccccgcctctctcca
ctccccacctgttcctgcagcacacctgcatgctcttgatatatttagca
ttacatttacacttcccagatcgtgcctcccaggtttccatgtgcccttt
cccaaatggcaccgtctcctcctaccttttcctgaccacgctaattaaaa
ttatggctgatagactattttggaaatctctcatttgcatcctgtctcaa
caaattcaattatgatttaaaaaaaaaaaaaggagcacccacttccaaga
tagagaacaatgaacttggagctgagtcctagctatgtcatcaaacagca
gacgcccttgaatcttgggtccttgaacttcattttctcatatccctgat
gggagcagtgtcctacccgctcacaaatctctatgagataatgtatagta
taaacaattttaaggcatgcgttcagcacaaaataaaatgtgttggggcc
ccctcctttccttctcttgaagaatgaacataaggtaccttggtgaaaga
ggggaacttagaactcacaagaaatttacctctcaggccacacaggccac
acatggctgcgaacacagtcgattccatttcaatgttcctgacaccagct
ctgtatgctctcttcaagtagtctagctttttctctctcgaaaaggagca
taacgccccatctaggcgaccttggcctgaaaagagaatggagtgattta
gtggctaccgcctcacctccatggcagaagcatccttcagaggctgtctg
cttatgtccctacctcttgagtgaccctcttctggggacctggctgtgga
ctctttcctctaaaggactatagaacatgacctcacctggttcacatctc
atacacaaggcaaatgtaccggagtgctcggtttgaaagacagtgggaca
tcaggaatgggttgaaggggtcaagaagaaagctgttctttgaggagacc
ctcagcctgatgcatgtacaggggcatagggcatggtgggaatatcctgg
ggagaaaggttttcacctcatgatgtctcttgagcaatgtttggatctct
gccactctcc
gaattcaagagcttagtctgtttaagtctcaagttcccactgtgaggcag
agagcacttaaccccttgcagaatgcagcctgtgcttagacctatgagaa
cattaccttcttctccaagaacaggagatatgtactccgcagttttacaa
atagaagggtcattagcattgacaccaaccaaccaaccaaccaaccaaat
aacaaacaaaccaaacaaccctaaagaactgctttggcaaataacaacct
caagggggcgccctaccctgccactctggaaactccccccccccccaacc
cccttccgggattcccactcttgctctgaagtcaagacgccagacaactg
gtcttattttgaaagaacacaagagttgctttccacctcagttaagtgac
gggattcctggcaggttatctttcaggcagacgagaggttgatggatctt
cctgggagacagactttgagctatagagagccatcatgcgattgaccact
atcgcagctcccgttgtcccattgctgtctccacataatgggagtctatg
accggtatggatttctgttggctttcttctctgatgctggccttcagctt
cggtttgtcagcctctcagcaagtgcagcaggaagcaataacagctcctt
ttttgtgtttgtcccctcttctctgcgacccccgatgggcaatgcactga
gcactttacatgcatcgtggcatagccttgtgatgatcattctgtgaagt
gctaacatcactatatttgctttacacttgaaaattgcaaagtgtgagca
attaagtcctttctttgcgggtgacctatttacagtaagggtttgcggct
tctttctgccttgcattcatttttcttgctcctttgcttctttcttctgg
cttgtgcttcctactgccagcctttccattcagctaactttgcctgaaag
atggagcttctcagttctcaggggcctggaagtttctggcaaccactgga
cttgaagtcctcagctgtacagcaagcactcttcttgctggccccactgg
caaactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_58632026_58633188
seq2: B6Ng01-105K12.b_43_1202 (reverse)

seq1  GGAGAGTGGCAGTATTCAAACCATTTGCCTCAGGAG-CATCACTGAGGTA  49
      ||||||||||||   || || ||||   |||| ||| ||||| |||||| 
seq2  GGAGAGTGGCAGAGATCCAAACATT--GCTCAAGAGACATCA-TGAGGT-  46

seq1  TGAAACCCTTCTCCCCTGG-TATCTCCA-CATGGCCTATGCCCCTGTCAC  97
        ||||| |||||||| || |||  ||| |||| |||||||||||||   
seq2  GAAAACCTTTCTCCCCAGGATATTCCCACCATGCCCTATGCCCCTGTACA  96

seq1  TGCATCA-GCTGAGGGTCTCCTCAAAGGACAGCTTTCTCTGTGACCCCCT  146
      ||||||| ||||||||||||||||||| ||||||||||   ||| |||||
seq2  TGCATCAGGCTGAGGGTCTCCTCAAAGAACAGCTTTCTTCTTGA-CCCCT  145

seq1  TCACCCCATTCCTGATGTCCCCACTGTCTTTCAAAACCGGGCACTTCGGT  196
      ||| |||||||||||||| ||||||||||||| |||||| ||||| ||||
seq2  TCAACCCATTCCTGATGT-CCCACTGTCTTTC-AAACCGAGCACTCCGGT  193

seq1  ACATTCTGCCTTGTGTATGAGATGTGAACCAGGTGAGGTCATGTTCTATA  246
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATT-TGCCTTGTGTATGAGATGTGAACCAGGTGAGGTCATGTTCTATA  242

seq1  GTCCTTTAGAGGAAAGAGTCCACAGCCAGGTCCCCAGAAGAGGGTCACTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTAGAGGAAAGAGTCCACAGCCAGGTCCCCAGAAGAGGGTCACTC  292

seq1  AAGAGGTAGGGACATAAGCAGACAGCCTTCTG-AGGATGCTTCTGCCATG  345
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  AAGAGGTAGGGACATAAGCAGACAGCC-TCTGAAGGATGCTTCTGCCATG  341

seq1  GAGGTGAGGCGGTAGCCACTAAATCACTCCATTCTC-TTTCAGGCCAAGG  394
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGGTGAGGCGGTAGCCACTAAATCACTCCATTCTCTTTTCAGGCCAAGG  391

seq1  TCGCCTAGATGGGGCGTTATGCTCCTTTTCGAGAGAGAAAAAGCTAGACT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCTAGATGGGGCGTTATGCTCCTTTTCGAGAGAGAAAAAGCTAGACT  441

seq1  ACTTGAAGAGAGCATACAGAGCTGGTGTCAGGAACATTGAAATGGAATCG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAGAGAGCATACAGAGCTGGTGTCAGGAACATTGAAATGGAATCG  491

seq1  ACTGTGTTCGCAGCCATGTGTGGCCTGTGTGGCCTGAGAGGTAAATTTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTTCGCAGCCATGTGTGGCCTGTGTGGCCTGAGAGGTAAATTTCT  541

seq1  TGTGAGTTCTAAGTTCCCCTCTTTCACCAAGGTACCTTATGTTCATTCTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTCTAAGTTCCCCTCTTTCACCAAGGTACCTTATGTTCATTCTT  591

seq1  CAAGAGAAGGAAAGGAGGGGGCCCCAACACATTTTATTTTGTGCTGAACG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAAGGAAAGGAGGGGGCCCCAACACATTTTATTTTGTGCTGAACG  641

seq1  CATGCCTTAAAATTGTTTATACTATACATTATCTCATAGAGATTTGTGAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTTAAAATTGTTTATACTATACATTATCTCATAGAGATTTGTGAG  691

seq1  CGGGTAGGACACTGCTCCCATCAGGGATATGAGAAAATGAAGTTCAAGGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTAGGACACTGCTCCCATCAGGGATATGAGAAAATGAAGTTCAAGGA  741

seq1  CCCAAGATTCAAGGGCGTCTGCTGTTTGATGACATAGCTAGGACTCAGCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGATTCAAGGGCGTCTGCTGTTTGATGACATAGCTAGGACTCAGCT  791

seq1  CCAAGTTCATTGTTCTCTATCTTGGAAGTGGGTGCTCCTTTTTTTTTTTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTCATTGTTCTCTATCTTGGAAGTGGGTGCTCCTTTTTTTTTTTT  841

seq1  TAAATCATAATTGAATTTGTTGAGACAGGATGCAAATGAGAGATTTCCAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCATAATTGAATTTGTTGAGACAGGATGCAAATGAGAGATTTCCAA  891

seq1  AATAGTCTATCAGCCATAATTTTAATTAGCGTGGTCAGGAAAAGGTAGGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCTATCAGCCATAATTTTAATTAGCGTGGTCAGGAAAAGGTAGGA  941

seq1  GGAGACGGTGCCATTTGGGAAAGGGCACATGGAAACCTGGGAGGCACGAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACGGTGCCATTTGGGAAAGGGCACATGGAAACCTGGGAGGCACGAT  991

seq1  CTGGGAAGTGTAAATGTAATGCTAAATATATCAAGAGCATGCAGGTGTGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGTGTAAATGTAATGCTAAATATATCAAGAGCATGCAGGTGTGC  1041

seq1  TGCAGGAACAGGTGGGGAGTGGAGAGAGGCGGGGCGCAAGGGAGGGGGAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAACAGGTGGGGAGTGGAGAGAGGCGGGGCGCAAGGGAGGGGGAG  1091

seq1  GGGCTGTCACACACTACACAGTTCTGAAGAGAAACCCAACAAGTGTTGCT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTCACACACTACACAGTTCTGAAGAGAAACCCAACAAGTGTTGCT  1141

seq1  GACAGTTCGATGTGAATTC  1163
      |||||||||||||||||||
seq2  GACAGTTCGATGTGAATTC  1160

seq1: chr2_58517024_58518085
seq2: B6Ng01-105K12.g_70_1127

seq1  GAATTCAAGAGCTTAGTCTGTTTAAGTCTCAAGTTCCCACTGTGAGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGCTTAGTCTGTTTAAGTCTCAAGTTCCCACTGTGAGGCAG  50

seq1  AGAGCACTTAACCCCTTGCAGAATGCAGCCTGTGCTTAGACCTATGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTTAACCCCTTGCAGAATGCAGCCTGTGCTTAGACCTATGAGAA  100

seq1  CATTACCTTCTTCTCCAAGAACAGGAGATATGTACTCCGCAGTTTTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCTTCTTCTCCAAGAACAGGAGATATGTACTCCGCAGTTTTACAA  150

seq1  ATAGAAGGGTCATTAGCATTGACACCAACCAACCAACCAACCAACCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGGGTCATTAGCATTGACACCAACCAACCAACCAACCAACCAAAT  200

seq1  AACAAACAAACCAAACAACCCTAAAGAACTGCTTTGGCAAATAACAACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACCAAACAACCCTAAAGAACTGCTTTGGCAAATAACAACCT  250

seq1  CAAGGGGGCGCCCTACCCTGCCACTCTGGAAACTCCCCCCCCCCCCAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGGCGCCCTACCCTGCCACTCTGGAAACTCCCCCCCCCCCCAACC  300

seq1  CCCTTCCGGGATTCCCACTCTTGCTCTGAAGTCAAGACGCCAGACAACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCGGGATTCCCACTCTTGCTCTGAAGTCAAGACGCCAGACAACTG  350

seq1  GTCTTATTTTGAAAGAACACAAGAGTTGCTTTCCACCTCAGTTAAGTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATTTTGAAAGAACACAAGAGTTGCTTTCCACCTCAGTTAAGTGAC  400

seq1  GGGATTCCTGGCAGGTTATCTTTCAGGCAGACGAGAGGTTGATGGATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCCTGGCAGGTTATCTTTCAGGCAGACGAGAGGTTGATGGATCTT  450

seq1  CCTGGGAGACAGACTTTGAGCTATAGAGAGCCATCATGCGATTGACCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAGACAGACTTTGAGCTATAGAGAGCCATCATGCGATTGACCACT  500

seq1  ATCGCAGCTCCCGTTGTCCCATTGCTGTCTCCACATAATGGGAGTCTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCAGCTCCCGTTGTCCCATTGCTGTCTCCACATAATGGGAGTCTATG  550

seq1  ACCGGTATGGATTTCTGTTGGCTTTCTTCTCTGATGCTGGCCTTCAGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGTATGGATTTCTGTTGGCTTTCTTCTCTGATGCTGGCCTTCAGCTT  600

seq1  CGGTTTGTCAGCCTCTCAGCAAGTGCAGCAGGAAGCAATAACAGCTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTGTCAGCCTCTCAGCAAGTGCAGCAGGAAGCAATAACAGCTCCTT  650

seq1  TTTTGTGTTTGTCCCCTCTTCTCTGCGACCCCCGATGGGCAATGCACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTTTGTCCCCTCTTCTCTGCGACCCCCGATGGGCAATGCACTGA  700

seq1  GCACTTTACATGCATCGTGGCATAGCCTTGTGATGATCATTCTGTGAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTACATGCATCGTGGCATAGCCTTGTGATGATCATTCTGTGAAGT  750

seq1  GCTAACATCACTATATTTGCTTTACACTTGAAAATTGCAAAGTGTGAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACATCACTATATTTGCTTTACACTTGAAAATTGCAAAGTGTGAGCA  800

seq1  ATTAAGTCCTTTCTTTGC-GGTGACCTATTTACAGTAAGGGTTTGCGGCT  849
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTAAGTCCTTTCTTTGCGGGTGACCTATTTACAGTAAGGGTTTGCGGCT  850

seq1  TCTTTCTGCCTTGCATTCATTTTTCTTGTCTCCTTTGCTTCTTTCTTCTG  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCTTTCTGCCTTGCATTCATTTTTCTTG-CTCCTTTGCTTCTTTCTTCTG  899

seq1  GCTTGTGCTTCCTACTGCCAGCCTTTCCATTCAGCTAACTTTGCCTGACA  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCTTGTGCTTCCTACTGCCAGCCTTTCCATTCAGCTAACTTTGCCTGAAA  949

seq1  GATGGAGCTTCCTCAGTTCTCAGGTGCCCTGAAGGTTTCCTGGCAACCAC  999
      |||||||||| ||||||||||||| |||  ||||  || |||||||||| 
seq2  GATGGAGCTT-CTCAGTTCTCAGGGGCCTGGAAG--TTTCTGGCAACCA-  995

seq1  CTGGTCTTGAGGTCCTCAGCTGTCACAGCAAGCACTCT--CTGCTGCCCC  1047
      |||| ||||| |||||||||||| ||||||||||||||   ||||| |||
seq2  CTGGACTTGAAGTCCTCAGCTGT-ACAGCAAGCACTCTTCTTGCTGGCCC  1044

seq1  CACCTGGCAAACTCT  1062
      || ||||||||||||
seq2  CA-CTGGCAAACTCT  1058