BAC Information

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BAC

Clone NameB6Ng01-105P20
Chromosome2 (Build37)6 (Build37)
Map Location 142,776,700 - 142,776,966139,006,280 - 139,007,407
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105P20.bB6Ng01-105P20.g
ACCDH913858DH913859
length1,0451,128
definitionDH913858|Mus musculus domesticus DNA, BAC clone: B6Ng01-105P20, 5' end.DH913859|Mus musculus domesticus DNA, BAC clone: B6Ng01-105P20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,700 - 142,776,966)(139,006,280 - 139,007,407)
sequence
gaattcagcctgcaggctgcagttgatgcttattagttgtaaggtctgtg
tattgaccaacaccttttaattttcccatggatatattcagatgcgtgat
gaatcaggtttattatcttaataaacatctgcactaaggagtatatacca
ctaaaaacatacacacacatttcagacataataaacatttaatttttaaa
aaaaatcaaatgttcaagcacagaaggtaaagctattctggtacaggcca
cttttggataaactctctcaatgtacagagattctcctataatagagtca
gttcagaaaaccaaacaatggtctctgatgagcaccctgtccatccctcg
aggattcatgcaagagatttggttctttaacagttctagggcagtgatta
agaaacctttcccagagatagagtccataagagttggacatttcacagat
ctcttcaagaaaactgagtttatttgaaatatattatgaggataagccag
tggctattgttaaaagaagtattgttgattcatacattaagaacctcaga
tgttcagctgaagtcatgaattatatgtaaacaagatttctggaaggaat
cagggaaagatgggttataaattcatcttcaagtcaaagtaaatctttct
ctctcatgtactaaccctgcaaagaggctcatatttaatttaattggtcc
atagaaacatttagctttgatatattgttgagaacagttgccatgtgaaa
tttgtgggacttaaaacctggatgcccatatcttcaaagcttttccccac
tttctcctctataagtttcactgtctctggttttatgtggagttgcttga
tccacttagatttgaccttagtacaaggagataggaatgtatcaattcgc
attcttctacatgttaactgccagttgtgccagcaccatttgtgaaaatg
ctgtcttttttctgctggatggtttagctcccttgtcaaagatcaagtga
cataggtgtgtgggttcacttctgggtctcaattcagaagaatgg
gaattctttgtttagctctgtaccccattttataattggattatttggat
ctctggagtctaatttcttgagttctttgtatgttttggatattagtcct
ctatttatcttaaatagagggaagccaacaaaagattatgcataaaagaa
ggtcatgctaggttttgaattccacagatagagataagtatcaatgaaca
ggagaatgggacattgctctgaaggaagagacaggatcatacaaacgagt
tgagaagttaagaactgtggtatttggagtaagatatcaagcatgatctg
aagatgaagaaactgctttagaagatattaaacacattaaatacagaaat
cataggatatgtttaattagttgtagagattgtaaaaaggcaatttaata
ttctttctcaaaggctagaaaacatgcaaataagtggatatatcagtgag
acacaatggaagtggcaaggtagtcaaaagacttagatactgagcccttg
aaggtggtgtttttctagtgttgtcagaaattttgagtgagtcatgtacc
catcagtgttagacataggactaacacccaaagttataatcaccattgca
cagatggtcagttgaaattatgactacatagagagtaagtcactaacagc
aaatgatagagggtaatatattatttaagcttatcctagactttagtggt
atattttaatatataacagcagaatagttccagaaactgctcagtattga
gtggagagtcattggatatgatgaaggatatcctgaattggttataaaag
gctctatattttatgaccatttgaattaggatagggtttggagagatggc
tcagtatttaagagcactgagttcaaatcccagcaaccacatggtgactc
acaaccatctgtaatgagatctaatgtcctcttctggggtgtctgaaaac
agctacagtgtacttacatataataaaaaaaaatctttaggatttaagat
aggatgggtcttttcagagtcagaagaatggaaagggtagcttaagtcag
agaaggaaatggtgactataaaatatgagctatcaatagacaaacagcag
cctgagtctgtggagcaatttctcctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776700_142776966
seq2: B6Ng01-105P20.b_816_1078 (reverse)

seq1  GAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTC  50
      |||||| |||||||||| ||||||||||||||||| ||||||||||||| 
seq2  GAATTG-AGACCCAGAAGTGAACCCACACACCTAT-GTCACTTGATCTTT  48

seq1  GACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACAGCATTTTCAACAA  100
      |||||||||||| |||||||||||  ||| ||||||||||||||| ||||
seq2  GACAAGGGAGCT-AAACCATCCAGCAGAAAAAAGACAGCATTTTC-ACAA  96

seq1  TTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGGGAATCGATC  150
       ||||||||||||||||||  |||| |||||||||||||| |||| ||| 
seq2  ATGGTGCTGGCACAACTGGCAGTTAACATGTAGAAGAATGCGAATTGATA  146

seq1  CATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTT  200
      ||| | |||||||||||||||||||||||||||||||||||||| |||| 
seq2  CATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGCAACTC  196

seq1  CACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAG  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CACATAAAACCAGAGACAGTGAAACTTATAGAGGAGAAAGTGGGGAAAAG  246

seq1  CCTTGAAGATATGGGCA  267
      | |||||||||||||||
seq2  CTTTGAAGATATGGGCA  263

seq1: chr6_139006280_139007407
seq2: B6Ng01-105P20.g_69_1196

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTTATAATTGGATTATTTGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTTATAATTGGATTATTTGGAT  50

seq1  CTCTGGAGTCTAATTTCTTGAGTTCTTTGTATGTTTTGGATATTAGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAGTCTAATTTCTTGAGTTCTTTGTATGTTTTGGATATTAGTCCT  100

seq1  CTATTTATCTTAAATAGAGGGAAGCCAACAAAAGATTATGCATAAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATCTTAAATAGAGGGAAGCCAACAAAAGATTATGCATAAAAGAA  150

seq1  GGTCATGCTAGGTTTTGAATTCCACAGATAGAGATAAGTATCAATGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGCTAGGTTTTGAATTCCACAGATAGAGATAAGTATCAATGAACA  200

seq1  GGAGAATGGGACATTGCTCTGAAGGAAGAGACAGGATCATACAAACGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATGGGACATTGCTCTGAAGGAAGAGACAGGATCATACAAACGAGT  250

seq1  TGAGAAGTTAAGAACTGTGGTATTTGGAGTAAGATATCAAGCATGATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGTTAAGAACTGTGGTATTTGGAGTAAGATATCAAGCATGATCTG  300

seq1  AAGATGAAGAAACTGCTTTAGAAGATATTAAACACATTAAATACAGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAAGAAACTGCTTTAGAAGATATTAAACACATTAAATACAGAAAT  350

seq1  CATAGGATATGTTTAATTAGTTGTAGAGATTGTAAAAAGGCAATTTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGATATGTTTAATTAGTTGTAGAGATTGTAAAAAGGCAATTTAATA  400

seq1  TTCTTTCTCAAAGGCTAGAAAACATGCAAATAAGTGGATATATCAGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTCAAAGGCTAGAAAACATGCAAATAAGTGGATATATCAGTGAG  450

seq1  ACACAATGGAAGTGGCAAGGTAGTCAAAAGACTTAGATACTGAGCCCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGGAAGTGGCAAGGTAGTCAAAAGACTTAGATACTGAGCCCTTG  500

seq1  AAGGTGGTGTTTTTCTAGTGTTGTCAGAAATTTTGAGTGAGTCATGTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGTGTTTTTCTAGTGTTGTCAGAAATTTTGAGTGAGTCATGTACC  550

seq1  CATCAGTGTTAGACATAGGACTAACACCCAAAGTTATAATCACCATTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTGTTAGACATAGGACTAACACCCAAAGTTATAATCACCATTGCA  600

seq1  CAGATGGTCAGTTGAAATTATGACTACATAGAGAGTAAGTCACTAACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGTCAGTTGAAATTATGACTACATAGAGAGTAAGTCACTAACAGC  650

seq1  AAATGATAGAGGGTAATATATTATTTAAGCTTATCCTAGACTTTAGTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATAGAGGGTAATATATTATTTAAGCTTATCCTAGACTTTAGTGGT  700

seq1  ATATTTTAATATATAACAGCAGAATAGTTCCAGAAACTGCTCAGTATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAATATATAACAGCAGAATAGTTCCAGAAACTGCTCAGTATTGA  750

seq1  GTGGAGAGTCATTGGATATGATGAAGGATATCCTGAATTGGTTATAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAGTCATTGGATATGATGAAGGATATCCTGAATTGGTTATAAAAG  800

seq1  GCTCTATATTTTATGACCATTTGAATTAGGATAGGGTTTGGAGAGATGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATATTTTATGACCATTTGAATTAGGATAGGGTTTGGAGAGATGGC  850

seq1  TCAGTATTTAAGAGCACTGAGTTCAAATCCCAGCAACCACATGGTGACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATTTAAGAGCACTGAGTTCAAATCCCAGCAACCACATGGTGACTC  900

seq1  ACAACCATCTGTAATGAGATCTAATGTCCTCTTCTGGGGTGTCTGAAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATCTGTAATGAGATCTAATGTCCTCTTCTGGGGTGTCTGAAAAC  950

seq1  AGCTACAGTGTACTTACATATAATAAAAAAAAATCTTTA-GAATTAAGAT  999
      ||||||||||||||||||||||||||||||||||||||| || |||||||
seq2  AGCTACAGTGTACTTACATATAATAAAAAAAAATCTTTAGGATTTAAGAT  1000

seq1  AGGATGGTTC-TATCAGAGTCAG-AGAATGGAAAGGGTAGCTTTAAAGTC  1047
      ||||||| || | |||||||||| |||||||||||||||||||  |||||
seq2  AGGATGGGTCTTTTCAGAGTCAGAAGAATGGAAAGGGTAGCTT--AAGTC  1048

seq1  A-AGAGAGAAAT-GTGACTATAAAAAATATGAGCTATCAATAGGACAAAC  1095
      | |||  ||||| ||||||||  ||||||||||||||||||| |||||||
seq2  AGAGAAGGAAATGGTGACTAT--AAAATATGAGCTATCAATA-GACAAAC  1095

seq1  AGCAGCCTGAGTCTGT-GAGCCATGTTCTCCTGG  1128
      |||||||||||||||| |||| || |||||||||
seq2  AGCAGCCTGAGTCTGTGGAGCAAT-TTCTCCTGG  1128