BAC Information

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BAC

Clone NameB6Ng01-106C15
Chromosome2 (Build37)
Map Location 179,385,735 - 179,565,230
singlet/doubletdoublet
Overlap geneCdh4
Upstream geneLOC100039368, LOC665264, LOC100043168, LOC100039413
Downstream geneTaf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106C15.bB6Ng01-106C15.g
ACCDH913982DH913983
length1,158755
definitionDH913982|Mus musculus domesticus DNA, BAC clone: B6Ng01-106C15, 5' end.DH913983|Mus musculus domesticus DNA, BAC clone: B6Ng01-106C15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(179,564,060 - 179,565,230)(179,385,735 - 179,386,487)
sequence
gaattcatttgtccaaaagtgggagaagagatatctagtgatgttacctg
aaaagctgatgaaccacaaagggcatagccgtgagtgctcgtcagactac
acaatgttgttttttcaatatttttacatcaggagacttggcgctcagta
aggaggatcagacgttgactctgacgttgacaacgccagactcctgtgaa
taactaaagtcttcttttgtgtgttccttgaggagaatgcgtgtgtggtg
accccaggacaaatttcccaggagccagcaaacctggctcctggccatgg
gggtcaaaggctaggatgttcttttactgccacctgctggcgaccaggca
tatgtcccttcaccttgctggttctaagtctgtccatgagacaacctctg
acacatctgttggtgtccagttccttgcttttatgagggcacacgcaaaa
ccagggagggacaatggcctgcatctcagtggctggcttgtgaccttata
tcagggaggagtctgacaggctttatttcttctagaatctaagagccagg
gtaaccaagaaggccatcaggcagtacctgccggcttcattgtgcgcagg
tgtggagagaccttgcgcgtcttctggagtgagtgggtctcacaaggagg
gtgccactcccaccagctgtgcagaagcaatgcagtgggcatggcgggtg
ctgccacaaaccactgcctttgccttctcttcttacagctgtgctgattt
cagatcaatcaagtctcgggtctcaaagattggatttcacataagaatct
gaaggcacggctccctgaaaaaccgaggcatctggaagatttgactcgag
acaattatgtgggggagcggagaaagcagcctctttaaaggacgtacacg
ttcccaccccctcctactctctctcacaagcagcctggccttggcccctt
gaacctcaacaggagacccctacccaccgcacctctgccccacactgctg
cccactctggcttcagaatgcttgtcttgtagacaggctggattggccag
gcaccagctcctgagacctgtctgcctccccctgatacaagcatctcttc
cctttccatgaccactggccaactcttagatctcaagcttgactcaggtc
agcttgga
gaattctcacatcatgtcttgcctggccacccttcactctgacacttcac
agaaatccaacagaaatagacaggatccagagccagaaagagttgctcta
gggaacagcgaagagacagaaacagctgggacttacaggccttggttctg
gagtggccccatgatggtcttactgtcctggagtgaccccatggcggtct
tagaactgggtgtttctgctctacctgaagaccagacccagaaggccagt
cctacggaggagcccacttctttcagcctcacctggcatggggcaagtgc
tgtagacattctgtggccttgactttctttcctctgaatggtcctgtctg
gtgctgtccctgagggtgtactgagcctgtgtctgcacagtccaagcgct
tgacaccattcccgtccccgcaatcagaatcccacctgtgattcgtttct
aggcctccatacataagagagaaaaagactgtccatcctgaacccatagc
tgctttgggaggagaatgtgactggatatatcagttatgcgcccagacgc
aagcaggctctggtgtctgcgtaagtgctcccacctgggaagtggggctg
gcccaggacctcccttgctggagttaagaggttgcatgacttcataagaa
agttctagaatgtctaatatatgatgtgagtaactgttaattttttggtg
cacgggtgagaggcagaaagagaggggaggaatggaagaggtggggagag
gagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_179564060_179565230
seq2: B6Ng01-106C15.b_44_1201 (reverse)

seq1  TCCAAGCCTGACCTGGAGTTCAGACCTGAGATCTCAGAGTTTGGCCCAGT  50
      |||||| ||||||| ||| |||  | |||||||| ||||||  | |||||
seq2  TCCAAG-CTGACCT-GAG-TCAAGCTTGAGATCTAAGAGTT--GGCCAGT  45

seq1  GGTCATGGGAAGGGGAGGAGATGCCTTTGTGATCAGGTGGAGGCAGGACA  100
      |||||| |||| |||| |||||||  |||| |||||| ||||||| ||||
seq2  GGTCAT-GGAAAGGGAAGAGATGC--TTGT-ATCAGGGGGAGGCA-GACA  90

seq1  GGTTCTCAGGAGCTGGTGCCTGGCCATTCCAGCCTGGTCCTACAAGACCA  150
      || ||||||||||||||||||||||| |||||||||   ||||||||| |
seq2  GG-TCTCAGGAGCTGGTGCCTGGCCAATCCAGCCTG--TCTACAAGACAA  137

seq1  GCA-TCTGAGGCCAGAGTGGGCAGCAGTGTGGGGCAGAGGTTGCGGTGGG  199
      ||| ||||| |||||||||||||||||||||||||||||| |||||||||
seq2  GCATTCTGAAGCCAGAGTGGGCAGCAGTGTGGGGCAGAGG-TGCGGTGGG  186

seq1  TAGGGGGTCTCCTGTTGAGGTTCAAGGGGCCAAGGCCAGGCTGCTTGTGA  249
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-GGGGTCTCCTGTTGAGGTTCAAGGGGCCAAGGCCAGGCTGCTTGTGA  235

seq1  GAGAGAGTAGGAGGGGGTGGGAACGTGTACGTCCTTTAAAGAGGCTGC-T  298
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAGAGAGTAGGAGGGGGTGGGAACGTGTACGTCCTTTAAAGAGGCTGCTT  285

seq1  TCTCCGCTCCCCCACATAATTGTCTCGAGTCAAATCTTCCAGATGCCTCG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGCTCCCCCACATAATTGTCTCGAGTCAAATCTTCCAGATGCCTCG  335

seq1  GTTTTTCAGGGAGCCGTGCCTTCAGATTCTTATGTGAAATCCAATCTTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCAGGGAGCCGTGCCTTCAGATTCTTATGTGAAATCCAATCTTTG  385

seq1  AGACCCGAGACTTGATTGATCTGAAATCAGCACAGCTGTAAGAAGAGAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCGAGACTTGATTGATCTGAAATCAGCACAGCTGTAAGAAGAGAAG  435

seq1  GCAAAGGCAGTGGTTTGTGGCAGCACCCGCCATGCCCACTGCATTGCTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGCAGTGGTTTGTGGCAGCACCCGCCATGCCCACTGCATTGCTTC  485

seq1  TGCACAGCTGGTGGGAGTGGCACCCTCCTTGTGAGACCCACTCACTCCAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGCTGGTGGGAGTGGCACCCTCCTTGTGAGACCCACTCACTCCAG  535

seq1  AAGACGCGCAAGGTCTCTCCACACCTGCGCACAATGAAGCCGGCAGGTAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGCGCAAGGTCTCTCCACACCTGCGCACAATGAAGCCGGCAGGTAC  585

seq1  TGCCTGATGGCCTTCTTGGTTACCCTGGCTCTTAGATTCTAGAAGAAATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGATGGCCTTCTTGGTTACCCTGGCTCTTAGATTCTAGAAGAAATA  635

seq1  AAGCCTGTCAGACTCCTCCCTGATATAAGGTCACAAGCCAGCCACTGAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGTCAGACTCCTCCCTGATATAAGGTCACAAGCCAGCCACTGAGA  685

seq1  TGCAGGCCATTGTCCCTCCCTGGTTTTGCGTGTGCCCTCATAAAAGCAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCCATTGTCCCTCCCTGGTTTTGCGTGTGCCCTCATAAAAGCAAG  735

seq1  GAACTGGACACCAACAGATGTGTCAGAGGTTGTCTCATGGACAGACTTAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGACACCAACAGATGTGTCAGAGGTTGTCTCATGGACAGACTTAG  785

seq1  AACCAGCAAGGTGAAGGGACATATGCCTGGTCGCCAGCAGGTGGCAGTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCAAGGTGAAGGGACATATGCCTGGTCGCCAGCAGGTGGCAGTAA  835

seq1  AAGAACATCCTAGCCTTTGACCCCCATGGCCAGGAGCCAGGTTTGCTGGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATCCTAGCCTTTGACCCCCATGGCCAGGAGCCAGGTTTGCTGGC  885

seq1  TCCTGGGAAATTTGTCCTGGGGTCACCACACACGCATTCTCCTCAAGGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGAAATTTGTCCTGGGGTCACCACACACGCATTCTCCTCAAGGAA  935

seq1  CACACAAAAGAAGACTTTAGTTATTCACAGGAGTCTGGCGTTGTCAACGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAAAGAAGACTTTAGTTATTCACAGGAGTCTGGCGTTGTCAACGT  985

seq1  CAGAGTCAACGTCTGATCCTCCTTACTGAGCGCCAAGTCTCCTGATGTAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCAACGTCTGATCCTCCTTACTGAGCGCCAAGTCTCCTGATGTAA  1035

seq1  AAATATTGAAAAAACAACATTGTGTAGTCTGACGAGCACTCACGGCTATG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGAAAAAACAACATTGTGTAGTCTGACGAGCACTCACGGCTATG  1085

seq1  CCCTTTGTGGTTCATCAGCTTTTCAGGTAACATCACTAGATATCTCTTCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGTGGTTCATCAGCTTTTCAGGTAACATCACTAGATATCTCTTCT  1135

seq1  CCCACTTTTGGACAAATGAATTC  1171
      |||||||||||||||||||||||
seq2  CCCACTTTTGGACAAATGAATTC  1158

seq1: chr2_179385735_179386487
seq2: B6Ng01-106C15.g_68_822

seq1  GAATTCTCACATCATGTCTTGCCTGGCCACCCTTCACTCTGACACTTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACATCATGTCTTGCCTGGCCACCCTTCACTCTGACACTTCAC  50

seq1  AGAAATCCAACAGAAATAGACAGGATCCAGAGCCAGAAAGAGTTGCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCAACAGAAATAGACAGGATCCAGAGCCAGAAAGAGTTGCTCTA  100

seq1  GGGAACAGCGAAGAGACAGAAACAGCTGGGACTTACAGGCCTTGGTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAGCGAAGAGACAGAAACAGCTGGGACTTACAGGCCTTGGTTCTG  150

seq1  GAGTGGCCCCATGATGGTCTTACTGTCCTGGAGTGACCCCATGGCGGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCCCCATGATGGTCTTACTGTCCTGGAGTGACCCCATGGCGGTCT  200

seq1  TAGAACTGGGTGTTTCTGCTCTACCTGAAGACCAGACCCAGAAGGCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTGGGTGTTTCTGCTCTACCTGAAGACCAGACCCAGAAGGCCAGT  250

seq1  CCTACGGAGGAGCCCACTTCTTTCAGCCTCACCTGGCATGGGGCAAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACGGAGGAGCCCACTTCTTTCAGCCTCACCTGGCATGGGGCAAGTGC  300

seq1  TGTAGACATTCTGTGGCCTTGACTTTCTTTCCTCTGAATGGTCCTGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACATTCTGTGGCCTTGACTTTCTTTCCTCTGAATGGTCCTGTCTG  350

seq1  GTGCTGTCCCTGAGGGTGTACTGAGCCTGTGTCTGCACAGTCCAAGCGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTCCCTGAGGGTGTACTGAGCCTGTGTCTGCACAGTCCAAGCGCT  400

seq1  TGACACCATTCCCGTCCCCGCAATCAGAATCCCACCTGTGATTCGTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCATTCCCGTCCCCGCAATCAGAATCCCACCTGTGATTCGTTTCT  450

seq1  AGGCCTCCATACATAAGAGAGAAAAAGACTGTCCATCCTGAACCCATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCCATACATAAGAGAGAAAAAGACTGTCCATCCTGAACCCATAGC  500

seq1  TGCTTTGGGAGGAGAATGTGACTGGATATATCAGTTATGCGCCCAGACGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGGGAGGAGAATGTGACTGGATATATCAGTTATGCGCCCAGACGC  550

seq1  AAGCAGGCTCTGGTGTCTGCGTAAGTGCTCCCACCTGGGAAGTGGGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGCTCTGGTGTCTGCGTAAGTGCTCCCACCTGGGAAGTGGGGCTG  600

seq1  GCCCAGGACCTCCCTTGCTGGAGTTAAGAGGTTGCATGACTTCATAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGACCTCCCTTGCTGGAGTTAAGAGGTTGCATGACTTCATAAGAA  650

seq1  AGTTCTAGAATGTCTAATATATGATGTGAGTAACTGTTAA-TTTTTGGTG  699
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGTTCTAGAATGTCTAATATATGATGTGAGTAACTGTTAATTTTTTGGTG  700

seq1  CACGGGTGAGAGGCAGAAAGAGAGGGGAGGAATGGAAGAGGT-GGGAGAG  748
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CACGGGTGAGAGGCAGAAAGAGAGGGGAGGAATGGAAGAGGTGGGGAGAG  750

seq1  GAGCC  753
      |||||
seq2  GAGCC  755