BAC Information

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BAC

Clone NameB6Ng01-106F06
Chromosome2 (Build37)
Map Location 141,521,203 - 141,657,951
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC668913, LOC668914, Kif16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106F06.bB6Ng01-106F06.g
ACCDH914100DH914101
length1,1091,144
definitionDH914100|Mus musculus domesticus DNA, BAC clone: B6Ng01-106F06, 5' end.DH914101|Mus musculus domesticus DNA, BAC clone: B6Ng01-106F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,656,826 - 141,657,951)(141,521,203 - 141,522,357)
sequence
gaattcagtaagctcttatgactacatgatgtgcacatcacccgcaaagc
catctgcctatccctgagacttccctatactaccttattggcatattttt
aggtcctctctccctcttcatacttttcttacctgccatacccctccctc
aatttcttctttgatcttttccttttcagtttcaaatcatggtagcatta
gggagagggaaagatttttaaaaaaaatggaatgagggcctacaaaattt
aagtctgaaaagaagctcttatagaaaaccacccagcctctgcttaaaag
actaaaattcccagcacagaggcaagaaaaaattgtggtattttcccagt
ggttggtatttaattagccttctactattgtcaatcgcctcttctgacac
agggataaatcactcgtaagctattttggaagcttgtcctgttgccacca
ccgtgtcatcaatcctctcatcagctttgtcattacagatcccagccatt
tctcaccttttcgggaactctacatgaatttgaccctgagaagtatttgg
ccactatcatctcagctattaaatgccagattcaggcatctcaaactgtg
tgtcaagacaccgtattctggcagcaatgaacctattacctatttttttt
attattatttcatgaaaacaggctttttgcacatctcaaaaaatgcatgc
cacagttctcacaggaatctagctccattgtaggtaccaaggaggagaat
atttgctagcatctgtaataattcccagatttttgatgggattgtacatc
catattatacaaagagtctctgaccatctttactaggtgaagttggcaga
aatgtgtagcaatgggagctagctaaacaccatctctattagcagaatgc
aggtttagcccatgaatcctataatgtgcatattctcattttatcgaaga
tgatgggcatccagagccagtgttactcttgatgactggcagaagccaca
agcttggcttcaaagttttctttgatatcccaagtctcactgttgtctcc
ctgttattttgcctcccatattcttctcaactccctcttcttatcttgca
gtactcatg
gaattctttgggacatagttattcgttacattttgatatccctttccttt
actctgtgctactattggctaatgtaagcctattcaacttattgactcat
agtcacagatatgaccacaatagtgcccagttcatttgtcactttctgtt
gagtgatgtagctctagcttatcacatacatttcctgccccagacttaag
cattttctccaaagagtatattaaaggagaaattgtagtacatgggatat
atgactgttgacatgaataagcagcagtagaaagagacaacccaagtgtt
cacaatatagaagacagtaggaaaatattatttgtattgcaatgggcagt
ggttttctgtctggtagagaactgggtattggtgggaacattaacagtta
gtcttgtcagaggaacaagagtacatggaattcttcagatggacagaaca
ctggagaatgagaaggctgcaggtgtgtggatagtgtagagatgaaggga
ttggcttacactattgtaaaggcagtgtacacaagctggcaggtagacta
gaaggctggacacctagtgcagaatggagtggctgttgtagctcttatct
gatggcagaaatacatcctcctcagggaagttctgctcttttcctttaaa
taattcaatggattcttatcatttatggagaatacccagttcactcaatg
tctcatcatttaaatgtttatctcaccaaaaatattgcctttattagaca
tctagagtaatagcaaaccaattatctgagtaccatgttatagccatgct
gccatataacttaaccatcaagcacacacacacatgcacacacacacaca
cacacacacacacacacacacacacacacacacaaacactcacatactca
aagagagagaaagagagacagagacagagaccgtgagttatacagagagg
tgtgcatcttcttacaaattaaccatttaaccaccacaaagtgaaatttg
ggaaagtgactatgatacgaaaatctctaaatatcaatgtaaatatggga
acagcaactatgtctaatggataaaaatgtacagaaattaaaggatactt
ggacataaattaatagcaacgtggttcaagactaaagtgatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_141656826_141657951
seq2: B6Ng01-106F06.b_48_1156 (reverse)

seq1  CATGAGTAATTGCAGAGATAAAGAAGAGGGGAGTGTGAGATAGAATATGG  50
      ||||||| | |||| |||| ||||||| |||||| ||||| ||||||| |
seq2  CATGAGT-ACTGCA-AGAT-AAGAAGA-GGGAGT-TGAGA-AGAATAT-G  43

seq1  GGAGGCAAAATAAACAGGGGAGACAAACAGTGAGACCTTGGGGATATTCA  100
      ||||||||||| |||| ||||||| |||||||||||  | |||||| |||
seq2  GGAGGCAAAAT-AACA-GGGAGAC-AACAGTGAGAC--TTGGGATA-TCA  87

seq1  AAGAAAAACTTTGAAGGCCAAGCTTGTGGGCCTTCTTGCCAGTCATCAAG  150
      ||| ||||||||||| |||||||||||||  |||| ||||||||||||||
seq2  AAG-AAAACTTTGAA-GCCAAGCTTGTGG--CTTC-TGCCAGTCATCAAG  132

seq1  AGTAACACTGGCTCTGGATGCCCATCATCTTCGATAAAATGAGAATATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACACTGGCTCTGGATGCCCATCATCTTCGATAAAATGAGAATATGC  182

seq1  ACATTATAGGATTCATTGGCTAAACCTGCATTCTGCTAATAGAGATGGTG  250
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACATTATAGGATTCATGGGCTAAACCTGCATTCTGCTAATAGAGATGGTG  232

seq1  TTTAGCTAGCTCCCATTGCTACACATTTCTGCCAACTTCACCTAGTAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTAGCTCCCATTGCTACACATTTCTGCCAACTTCACCTAGTAAAG  282

seq1  ATGGTCAGAGACTCTTTGTATAATATGGATGTACAATCCCATCAAAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCAGAGACTCTTTGTATAATATGGATGTACAATCCCATCAAAAATC  332

seq1  TGGGAATTATTACAGATGCTAGCAAATATTCTCCTCCTTGGTACCTACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTATTACAGATGCTAGCAAATATTCTCCTCCTTGGTACCTACAA  382

seq1  TGGAGCTAGATTCCTGTGAGAACTGTGGCATGCATTTTTTGAGATGTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTAGATTCCTGTGAGAACTGTGGCATGCATTTTTTGAGATGTGCA  432

seq1  AAAAGCCTG-TTTCATGAAATAATAATAAAAAAAATAGGTAATAGGTTCA  499
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCTGTTTTCATGAAATAATAATAAAAAAAATAGGTAATAGGTTCA  482

seq1  TTGCTGCCAGAATACGGTGTCTTGACACACAGTTTGAGATGCCTGAATCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCCAGAATACGGTGTCTTGACACACAGTTTGAGATGCCTGAATCT  532

seq1  GGCATTTAATAGCTGAGATGATAGTGGCCAAATACTTCTCAGGGTCAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTAATAGCTGAGATGATAGTGGCCAAATACTTCTCAGGGTCAAAT  582

seq1  TCATGTAGAGTTCCCGAAAAGGTGAGAAATGGCTGGGATCTGTAATGACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAGAGTTCCCGAAAAGGTGAGAAATGGCTGGGATCTGTAATGACA  632

seq1  AAGCTGATGAGAGGATTGATGACACGGTGGTGGCAACAGGACAAGCTTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGATGAGAGGATTGATGACACGGTGGTGGCAACAGGACAAGCTTCC  682

seq1  AAAATAGCTTACGAGTGATTTATCCCTGTGTCAGAAGAGGCGATTGACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCTTACGAGTGATTTATCCCTGTGTCAGAAGAGGCGATTGACAA  732

seq1  TAGTAGAAGGCTAATTAAATACCAACCACTGGGAAAATACCACAATTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGAAGGCTAATTAAATACCAACCACTGGGAAAATACCACAATTTTT  782

seq1  TCTTGCCTCTGTGCTGGGAATTTTAGTCTTTTAAGCAGAGGCTGGGTGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCTCTGTGCTGGGAATTTTAGTCTTTTAAGCAGAGGCTGGGTGGT  832

seq1  TTTCTATAAGAGCTTCTTTTCAGACTTAAATTTTGTAGGCCCTCATTCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATAAGAGCTTCTTTTCAGACTTAAATTTTGTAGGCCCTCATTCCA  882

seq1  TTTTTTTTAAAAATCTTTCCCTCTCCCTAATGCTACCATGATTTGAAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAAAATCTTTCCCTCTCCCTAATGCTACCATGATTTGAAACT  932

seq1  GAAAAGGAAAAGATCAAAGAAGAAATTGAGGGAGGGGTATGGCAGGTAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAAAAGATCAAAGAAGAAATTGAGGGAGGGGTATGGCAGGTAAG  982

seq1  AAAAGTATGAAGAGGGAGAGAGGACCTAAAAATATGCCAATAAGGTAGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATGAAGAGGGAGAGAGGACCTAAAAATATGCCAATAAGGTAGTA  1032

seq1  TAGGGAAGTCTCAGGGATAGGCAGATGGCTTTGCGGGTGATGTGCACATC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAGTCTCAGGGATAGGCAGATGGCTTTGCGGGTGATGTGCACATC  1082

seq1  ATGTAGTCATAAGAGCTTACTGAATTC  1126
      |||||||||||||||||||||||||||
seq2  ATGTAGTCATAAGAGCTTACTGAATTC  1109

seq1: chr2_141521203_141522357
seq2: B6Ng01-106F06.g_70_1213

seq1  GAATTCTTTGGGACATAGTTATTCGTTACATTTTGATATCCCTTTCCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGGACATAGTTATTCGTTACATTTTGATATCCCTTTCCTTT  50

seq1  ACTCTGTGCTACTATTGGCTAATGTAAGCCTATTCAACTTATTGACTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTGCTACTATTGGCTAATGTAAGCCTATTCAACTTATTGACTCAT  100

seq1  AGTCACAGATATGACCACAATAGTGCCCAGTTCATTTGTCACTTTCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGATATGACCACAATAGTGCCCAGTTCATTTGTCACTTTCTGTT  150

seq1  GAGTGATGTAGCTCTAGCTTATCACATACATTTCCTGCCCCAGACTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATGTAGCTCTAGCTTATCACATACATTTCCTGCCCCAGACTTAAG  200

seq1  CATTTTCTCCAAAGAGTATATTAAAGGAGAAATTGTAGTACATGGGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTCCAAAGAGTATATTAAAGGAGAAATTGTAGTACATGGGATAT  250

seq1  ATGACTGTTGACATGAATAAGCAGCAGTAGAAAGAGACAACCCAAGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTTGACATGAATAAGCAGCAGTAGAAAGAGACAACCCAAGTGTT  300

seq1  CACAATATAGAAGACAGTAGGAAAATATTATTTGTATTGCAATGGGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATATAGAAGACAGTAGGAAAATATTATTTGTATTGCAATGGGCAGT  350

seq1  GGTTTTCTGTCTGGTAGAGAACTGGGTATTGGTGGGAACATTAACAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTGTCTGGTAGAGAACTGGGTATTGGTGGGAACATTAACAGTTA  400

seq1  GTCTTGTCAGAGGAACAAGAGTACATGGAATTCTTCAGATGGACAGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTCAGAGGAACAAGAGTACATGGAATTCTTCAGATGGACAGAACA  450

seq1  CTGGAGAATGAGAAGGCTGCAGGTGTGTGGATAGTGTAGAGATGAAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAATGAGAAGGCTGCAGGTGTGTGGATAGTGTAGAGATGAAGGGA  500

seq1  TTGGCTTACACTATTGTAAAGGCAGTGTACACAAGCTGGCAGGTAGACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTACACTATTGTAAAGGCAGTGTACACAAGCTGGCAGGTAGACTA  550

seq1  GAAGGCTGGACACCTAGTGCAGAATGGAGTGGCTGTTGTAGCTCTTATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTGGACACCTAGTGCAGAATGGAGTGGCTGTTGTAGCTCTTATCT  600

seq1  GATGGCAGAAATACATCCTCCTCAGGGAAGTTCTGCTCTTTTCCTTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAGAAATACATCCTCCTCAGGGAAGTTCTGCTCTTTTCCTTTAAA  650

seq1  TAATTCAATGGATTCTTATCATTTATGGAGAATACCCAGTTCACTCAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAATGGATTCTTATCATTTATGGAGAATACCCAGTTCACTCAATG  700

seq1  TCTCATCATTTAAATGTTTATCTCACC-AAAATATTGCCTTCATTAGACA  749
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  TCTCATCATTTAAATGTTTATCTCACCAAAAATATTGCCTTTATTAGACA  750

seq1  TCTAGAGTAATAGC-AACCAATTATCTGAGTACCATGTTATAGCCATGCT  798
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTAGAGTAATAGCAAACCAATTATCTGAGTACCATGTTATAGCCATGCT  800

seq1  GCCATATAACTTAACCATCAAGCACACACACACATGCACACACACACACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATAACTTAACCATCAAGCACACACACACATGCACACACACACACA  850

seq1  CACACACACACACACACACACACACACACACACAAACACACACATACACA  898
      ||||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  CACACACACACACACACACACACACACACACACAAACACTCACATACTCA  900

seq1  AAGAGAGAGAAAGAGAGACAGAGACAGAGACAGTGAGTTATACAGAGAGG  948
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGAGAGAGAAAGAGAGACAGAGACAGAGACCGTGAGTTATACAGAGAGG  950

seq1  TGTGCATCTTCTTACAAAATTAACAATTAACCACCACAAAGTGAAATTT-  997
      |||||||||||||||||| | | || ||||||||||||||||||||||| 
seq2  TGTGCATCTTCTTACAAATTAACCATTTAACCACCACAAAGTGAAATTTG  1000

seq1  GGAAAGTGACTATGAATACGAAAAATTCTCTAAAATATCAATGTAGATAT  1047
      |||||||||||||| |||||||||  ||||| ||||||||||||| ||||
seq2  GGAAAGTGACTATG-ATACGAAAA--TCTCT-AAATATCAATGTAAATAT  1046

seq1  GGGACACAGCAACTATGTTCATATGGATAATAAATGTAACAGAAAATTAA  1097
      |||| |||||||||||| ||  |||||||| |||||| |||| |||||||
seq2  GGGA-ACAGCAACTATG-TCTAATGGATAA-AAATGT-ACAG-AAATTAA  1091

seq1  ATGTAAACTTGGACATAAAATTAATAGCAACAGTGTTTCAAAGACTAAAT  1147
      | | | |||||||||| |||||||||||||| ||| ||| ||||||||| 
seq2  A-GGATACTTGGACAT-AAATTAATAGCAAC-GTGGTTC-AAGACTAAA-  1136

seq1  GTGATCAA  1155
      ||||||||
seq2  GTGATCAA  1144