BAC Information

Click to search

BAC

Clone NameB6Ng01-106H03
Chromosome2 (Build37)
Map Location 19,298,415 - 19,439,419
singlet/doubletdoublet
Overlap geneMsrb2, LOC100041196, Ptf1a, LOC100041534, 4921504E06Rik
Upstream geneDnajc1, LOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479, Pip5k2a, 4930426L09Rik, LOC667521, Armc3
Downstream geneLOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360, LOC667609, Etl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106H03.bB6Ng01-106H03.g
ACCDH914185DH914186
length572959
definitionDH914185|Mus musculus domesticus DNA, BAC clone: B6Ng01-106H03, 5' end.DH914186|Mus musculus domesticus DNA, BAC clone: B6Ng01-106H03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,298,415 - 19,298,992)(19,438,469 - 19,439,419)
sequence
cttgaatatctacaaaagcaaggtagagaagctgatgagctgctctgctc
tgctaagattagactgtcatggtgacctctaagtagttcttgaacacctg
cacaagcaagtaccaaaagccaaagccaggagtcagtcatgtcacaacaa
gcagacagtcactgtgcacagttttgaggggtagggggtcaaggaattgg
ggttgtcaggaatttatctttttaggaacttgaatcagagacaaatggct
gttaggtaccaaaatgaatgcccatcacaaaatggaatttgttagccgtc
acagttcacacacacacacacaggatggattttattcaacactaagaaca
tgaaatcatggtatttgcaggaaatcaacaggacgtggagtcattattat
gaccagaaagacaaatacctcatattttctctcgtgtgcagagcctctat
tttaaattatatttttaatatatttatatgtggggatcaggatacagtcc
ataaacatagaagaaagacatggagctggggggaggtcttagaggaaagg
tgtgtgtgtgtgtggtggggga
gaattcagaaaattatatgatcgtgcctctgtatctgcattgtcctagag
ttgcgtatttaaatccttggctccctgcttagaaatatggaattccctgt
ttttttcaggactcttttgccaaggagtccagctctccaaaaccaatctc
agaaaaggaacttctagactgcagggcagagaatgaaaggttaatacaaa
ttatcgcagagcttgaggaagaatcacggacggccataaatgaaaacgca
atgctaggtaacgtcaaccatttttcgtaatatatgtatttcattatata
tacacatatatatatatgtgtgtatatatgtatatatatatatatgttta
gaaatcagtttgctagctatcagtttttcttttaagatagctttctttgc
ttggaacataggatttatctatatttgtgctactgagccttgccttgtga
aaaaaaaaagaaaaaaggaaaggaaaggaaaggaaaggaaaggaaaggaa
aaagggaaaggaaaaaggaaaaaggaaaaaggaaaaagggaaagggaaag
gaaaggaaaggaaaggaaagaaaagaaaagaaaagaaaagaaaagaaaag
aaaagaaaagaaaaagaaaaagaaaagagcgctgctcggtttgccctact
tcccttaggagctctgtaaacagacacatgtgcaatggtctaaactatta
acctacataagagggcatgccaggatatgttgtggagaggcaggcttagc
ccttcagagcaaaatgctgggactcaatacttagatcccatttttatatg
aattttaaatgcaaattttcccttttgtgacttaggtttcattttgttca
gaccataaacatcagtaaaaaaatatatgcattttatctcagaagtacac
tgctttaaagtgcctttagatttaactatggccattgtaattggggggtg
gggggtatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_19298415_19298992
seq2: B6Ng01-106H03.b_46_623

seq1  GAATTCCTTGAATATCTACAAAAGCAAGGTAGAGAAGCTGATGAGCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGAATATCTACAAAAGCAAGGTAGAGAAGCTGATGAGCTGCT  50

seq1  CTGCTCTGCTAAGATTAGACTGTCATGGTGACCTCTAAGTAGTTCTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGCTAAGATTAGACTGTCATGGTGACCTCTAAGTAGTTCTTGAA  100

seq1  CACCTGCACAAGCAAGTACCAAAAGCCAAAGCCAGGAGTCAGTCATGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCACAAGCAAGTACCAAAAGCCAAAGCCAGGAGTCAGTCATGTCA  150

seq1  CAACAAGCAGACAGTCACTGTGCACAGTTTTGAGGGGTAGGGGGTCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGCAGACAGTCACTGTGCACAGTTTTGAGGGGTAGGGGGTCAAGG  200

seq1  AATTGGGGTTGTCAGGAATTTATCTTTTTAGGAACTTGAATCAGAGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGGTTGTCAGGAATTTATCTTTTTAGGAACTTGAATCAGAGACAA  250

seq1  ATGGCTGTTAGGTACCAAAATGAATGCCCATCACAAAATGGAATTTGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGTTAGGTACCAAAATGAATGCCCATCACAAAATGGAATTTGTTA  300

seq1  GCCGTCACAGTTCACACACACACACACAGGATGGATTTTATTCAACACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTCACAGTTCACACACACACACACAGGATGGATTTTATTCAACACTA  350

seq1  AGAACATGAAATCATGGTATTTGCAGGAAATCAACAGGACGTGGAGTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATGAAATCATGGTATTTGCAGGAAATCAACAGGACGTGGAGTCAT  400

seq1  TATTATGACCAGAAAGACAAATACCTCATATTTTCTCTCGTGTGCAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGACCAGAAAGACAAATACCTCATATTTTCTCTCGTGTGCAGAGC  450

seq1  CTCTATTTTAAATTATATTTTTAATATATTTATATGTGGGGATCAGGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTTAAATTATATTTTTAATATATTTATATGTGGGGATCAGGATA  500

seq1  CAGTCCATAAACATAGAAGAAAGACATGGAGCTGGGGGGAGGTCTTAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCATAAACATAGAAGAAAGACATGGAGCTGGGGGGAGGTCTTAGAG  550

seq1  GAAAGGTGTGTGTGTGTGTGGTGGGGGA  578
      ||||||||||||||||||||||||||||
seq2  GAAAGGTGTGTGTGTGTGTGGTGGGGGA  578

seq1: chr2_19438469_19439419
seq2: B6Ng01-106H03.g_67_1025 (reverse)

seq1  AATACCCCC--ACCCCCAAATACAATGCCAATAGTTAAATCTAAAGGCAC  48
      |||||||||   ||||||| ||||||| | ||||||||||||||||||||
seq2  AATACCCCCCACCCCCCAATTACAATGGCCATAGTTAAATCTAAAGGCAC  50

seq1  TTTAAAAGCAGTGTACTTCTGGAGATAAAAATGCATATATTTTTTTACTG  98
      ||| |||||||||||||||| ||||| |||||||||||||||||||||||
seq2  TTT-AAAGCAGTGTACTTCT-GAGAT-AAAATGCATATATTTTTTTACTG  97

seq1  ATGTTTATGGTCTGAACAAAATGAAACCTAAAGTCACAAAA-GGAAAATT  147
      ||||||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  ATGTTTATGGTCTGAACAAAATGAAACCT-AAGTCACAAAAGGGAAAATT  146

seq1  TGCATTTAAAATTCATATAAAAAATGGGATCTAAGTATTGAGTCCCAGCA  197
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGCATTTAAAATTCATAT-AAAAATGGGATCTAAGTATTGAGTCCCAGCA  195

seq1  TTTTGCTCTGAAGGGCTAAGCCTGCCTCTCCACAACATATCCTGGCATGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTCTGAAGGGCTAAGCCTGCCTCTCCACAACATATCCTGGCATGC  245

seq1  CCTCTTATGTAGGTTAATAGTTTAGACCATTGCACATGTGTCTGTTTACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTATGTAGGTTAATAGTTTAGACCATTGCACATGTGTCTGTTTACA  295

seq1  GAGCTCCTAAGGGAAGTAGGGCAAACCGAGCAGCGCTCTTTTCTTTTTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCTAAGGGAAGTAGGGCAAACCGAGCAGCGCTCTTTTCTTTTTCT  345

seq1  ----------TTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTCC  387
                ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTCC  395

seq1  TTTCCTTTCCTTTCCTTTCCCTTTCCCTTTTTCCTTTTTCCTTTTTCCTT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCCTTTCCTTTCCCTTTCCCTTTTTCCTTTTTCCTTTTTCCTT  445

seq1  TTTCCTTTCCCTTTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCCCTTTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTT  495

seq1  TTTTCTTTTTTTTTTCACAAGGCAAGGCTCAGTAGCACAAATATAGATAA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTTTTTTCACAAGGCAAGGCTCAGTAGCACAAATATAGATAA  545

seq1  ATCCTATGTTCCAAGCAAAGAAAGCTATCTTAAAAGAAAAACTGATAGCT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATGTTCCAAGCAAAGAAAGCTATCTTAAAAGAAAAACTGATAGCT  595

seq1  AGCAAACTGATTTCTAAACATATATATATATATACATATATACACACATA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTGATTTCTAAACATATATATATATATACATATATACACACATA  645

seq1  TATATATATGTGTATATATAATGAAATACATATATTACGAAAAATGGTTG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATGTGTATATATAATGAAATACATATATTACGAAAAATGGTTG  695

seq1  ACGTTACCTAGCATTGCGTTTTCATTTATGGCCGTCCGTGATTCTTCCTC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTACCTAGCATTGCGTTTTCATTTATGGCCGTCCGTGATTCTTCCTC  745

seq1  AAGCTCTGCGATAATTTGTATTAACCTTTCATTCTCTGCCCTGCAGTCTA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTGCGATAATTTGTATTAACCTTTCATTCTCTGCCCTGCAGTCTA  795

seq1  GAAGTTCCTTTTCTGAGATTGGTTTTGGAGAGCTGGACTCCTTGGCAAAA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCCTTTTCTGAGATTGGTTTTGGAGAGCTGGACTCCTTGGCAAAA  845

seq1  GAGTCCTGAAAAAAACAGGGAATTCCATATTTCTAAGCAGGGAGCCAAGG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTGAAAAAAACAGGGAATTCCATATTTCTAAGCAGGGAGCCAAGG  895

seq1  ATTTAAATACGCAACTCTAGGACAATGCAGATACAGAGGCACGATCATAT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATACGCAACTCTAGGACAATGCAGATACAGAGGCACGATCATAT  945

seq1  AATTTTCTGAATTC  951
      ||||||||||||||
seq2  AATTTTCTGAATTC  959