BAC Information

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BAC

Clone NameB6Ng01-106K17
Chromosome2 (Build37)
Map Location 33,936,129 - 34,088,384
singlet/doubletdoublet
Overlap genePbx3
Upstream geneGarnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931
Downstream geneLOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106K17.bB6Ng01-106K17.g
ACCDH914343DH914344
length1,135327
definitionDH914343|Mus musculus domesticus DNA, BAC clone: B6Ng01-106K17, 5' end.DH914344|Mus musculus domesticus DNA, BAC clone: B6Ng01-106K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,936,129 - 33,937,278)(34,088,058 - 34,088,384)
sequence
gaattctttacaaccagtctgtctccaacaatgagctaaatttccctttg
aaaatcaactttgggctttcttttgttcccccattctctttggttttcta
tcctgcaaggttttggggtgctatctatccatacactctgagcatgcaat
tgctatgcctcagaaaagtgggatccagagcatcagatgcccacttctgg
tctttgtgggcacccacaagcacatggaatacatactctaacacatgaaa
ataaaataaataagaggctggagagatggctcaacagttcagagccctta
ttgcttttgctaaggatctgagttcagttcccggcacccatattgggttg
atcacaaccatctgtagcatcaatttccagggatctgacaacctctcctg
gactccacaggcatctgtgtgcatgcacacagacacacaggggtgcgcgc
acacacacacacacacacacacacacacacacacacacacacacatacac
acggaggtgggggtagaatgccgtgggcaagcctgtaggtcattgttttt
gattgctgattgctgtggaaggaaccaactcactgtggacagtactatat
gtgggctgaaggtcctgagttctttaagaatgcaggctaagcaagtcatg
gagcaagtcaatgaacagaactcctctgtaacctctgcatcagcttctgc
cttcagcttcctgcctggagttcccaccctaacttttctcagtgatgtag
tatgacttaagagtcataggctaaaataatccctttccttcccaagttgc
ttttgtgcatagtgtgtaattgtgataggacagtttcttccatcttgtct
ccgctggagccatctttggtttaaccggaaactgacccccacttctactc
ctactgtgaaaagtcctaggggaaagtccccagccctgttctggaaacaa
gggctcaaagtgcccaagtaactgtagtttggcttctgttaaactgctgc
ttgcctcacgtcccctgacatgccaaccaggatgtgtgtttctggttctt
tgctcctgtaaaatgcatccagcaagctgctttgtgaaaatgttttcctc
aatatgggcttaacatagactcttatcgacttttt
ctatggtggtaagtggtaagtgataggcaggactggagtctaggctactc
tgtcttcaaagccacactctcctgtgctgcagtcaatttaaattataatt
gcaatgtgagttttattttaatttttaaaaatattagtttttaaatgtgt
gtgtgtgtgtatgtttgtttgtttgtttgtttgtgtattatatgagtgta
gatgcccttagaggccagaagagagcattcagtcttctggaactggactt
acaggccgttgtgaattgcctgatagtgctaagaattcaactctgaaaga
gctcactccatcactccagccccacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_33936129_33937278
seq2: B6Ng01-106K17.b_45_1179

seq1  GAATTCTTTACAACCAGTCTGTCTCCAACAATGAGCTAAATTTCCCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACAACCAGTCTGTCTCCAACAATGAGCTAAATTTCCCTTTG  50

seq1  AAAATCAACTTTGGGCTTTCTTTTGTTCCCCCATTCTCTTTGGTTTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAACTTTGGGCTTTCTTTTGTTCCCCCATTCTCTTTGGTTTTCTA  100

seq1  TCCTGCAAGGTTTTGGGGTGCTATCTATCCATACACTCTGAGCATGCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAAGGTTTTGGGGTGCTATCTATCCATACACTCTGAGCATGCAAT  150

seq1  TGCTATGCCTCAGAAAAGTGGGATCCAGAGCATCAGATGCCCACTTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGCCTCAGAAAAGTGGGATCCAGAGCATCAGATGCCCACTTCTGG  200

seq1  TCTTTGTGGGCACCCACAAGCACATGGAATACATACTCTAACACATGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGGGCACCCACAAGCACATGGAATACATACTCTAACACATGAAA  250

seq1  ATAAAATAAATAAGAGGCTGGAGAGATGGCTCAACAGTTCAGAGCCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAATAAGAGGCTGGAGAGATGGCTCAACAGTTCAGAGCCCTTA  300

seq1  TTGCTTTTGCTAAGGATCTGAGTTCAGTTCCCGGCACCCATATTGGGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTGCTAAGGATCTGAGTTCAGTTCCCGGCACCCATATTGGGTTG  350

seq1  ATCACAACCATCTGTAGCATCAATTTCCAGGGATCTGACAACCTCTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAACCATCTGTAGCATCAATTTCCAGGGATCTGACAACCTCTCCTG  400

seq1  GACTCCACAGGCATCTGTGTGCATGCACACAGACACACAGGGGTGCGCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCACAGGCATCTGTGTGCATGCACACAGACACACAGGGGTGCGCGC  450

seq1  ACACACACACACACACACACACACACACACACACACACACACACATACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACACATACAC  500

seq1  ACGGAGGTGGGGGTAGAATGCCGTGGGCAAGCCTGTAGGTCATTGTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGGTGGGGGTAGAATGCCGTGGGCAAGCCTGTAGGTCATTGTTTTT  550

seq1  GATTGCTGATTGCTGTGGAAGGAACCAACTCACTGTGGACAGTACTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTGATTGCTGTGGAAGGAACCAACTCACTGTGGACAGTACTATAT  600

seq1  GTGGGCTGAAGGTCCTGAGTTCTTTAAGAATGCAGGCTAAGCAAGTCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGAAGGTCCTGAGTTCTTTAAGAATGCAGGCTAAGCAAGTCATG  650

seq1  GAGCAAGTCAATGAACAGAACTCCTCTGTAACCTCTGCATCAGCTTCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGTCAATGAACAGAACTCCTCTGTAACCTCTGCATCAGCTTCTGC  700

seq1  CTTCAGCTTCCTGCCTGGAGTTCCCACCCTAACTTTTCTCAGTGATGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTTCCTGCCTGGAGTTCCCACCCTAACTTTTCTCAGTGATGTAG  750

seq1  TATGACTTAAGAGTCATAGGCTAAAATAATCCCTTTCCTTCCCAAGTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTTAAGAGTCATAGGCTAAAATAATCCCTTTCCTTCCCAAGTTGC  800

seq1  TTTTGTGCATAGTGTGTAATTGTGATAGGACAGTTTCTTCCATCTTGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGCATAGTGTGTAATTGTGATAGGACAGTTTCTTCCATCTTGTCT  850

seq1  CCGCTGGAGCCATCTTTGGTTTAACCGGAAACTGACCCCCACTTCTACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGGAGCCATCTTTGGTTTAACCGGAAACTGACCCCCACTTCTACTC  900

seq1  CTACTGTGAAAAGTCCTAGGGGAAAGTCCCCAGCCCTGTTCTGGAAACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGAAAAGTCCTAGGGGAAAGTCCCCAGCCCTGTTCTGGAAACAA  950

seq1  GGGCTCAAAGTGCCCAAGTAACTGTAGTTTTGGCTTCTGTTAAACTGCTT  1000
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  GGGCTCAAAGTGCCCAAGTAACTGTAG-TTTGGCTTCTGTTAAACTGC-T  998

seq1  GCTTGCCTCACGTCCCCTGACATTGCCAACCAGGATGTGGTGTTTCTGTG  1050
      |||||||||||||||||||||| ||||||||||||||| ||||||||| |
seq2  GCTTGCCTCACGTCCCCTGACA-TGCCAACCAGGATGT-GTGTTTCTG-G  1045

seq1  TTCTTTGGCTCCCTGTAAAATGCATTCAAGGCAAGGCTGCTTTGTGAGAA  1100
      |||||| ||| |||||||||||||| ||  |||| |||||||||||| ||
seq2  TTCTTT-GCT-CCTGTAAAATGCATCCA--GCAA-GCTGCTTTGTGA-AA  1089

seq1  GTGTTTCTCTCCATATGGGGCTTACTATAGACTCTTAATTCAGACTTTTT  1150
       |||||  ||| |||| |||||||  |||||||||||  || ||||||||
seq2  ATGTTTTCCTCAATAT-GGGCTTAACATAGACTCTTA--TC-GACTTTTT  1135

seq1: chr2_34088058_34088384
seq2: B6Ng01-106K17.g_74_400 (reverse)

seq1  TTGTGGGGCTGGAGTGATGGAGTGAGCTCTTTCAGAGTTGAATTCTTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGGCTGGAGTGATGGAGTGAGCTCTTTCAGAGTTGAATTCTTAGC  50

seq1  ACTATCAGGCAATTCACAACGGCCTGTAAGTCCAGTTCCAGAGGACTGAA  100
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACTATCAGGCAATTCACAACGGCCTGTAAGTCCAGTTCCAGAAGACTGAA  100

seq1  TGCTCTCTTCTGGCCTCTAAGGGCATCTACACTCATATAATACACAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTTCTGGCCTCTAAGGGCATCTACACTCATATAATACACAAACA  150

seq1  AACAAACAAACAAACATACACACACACACACATTTAAAAACTAATATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAACATACACACACACACACATTTAAAAACTAATATTTT  200

seq1  TAAAAATTAAAATAAAACTCACATTGCAATTATAATTTAAATTGACTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTAAAATAAAACTCACATTGCAATTATAATTTAAATTGACTGCA  250

seq1  GCACAGGAGAGTGTGGCTTTGAAGACAGAGTAGCCTAGACTCCAGTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGAGAGTGTGGCTTTGAAGACAGAGTAGCCTAGACTCCAGTCCTG  300

seq1  CCTATCACTTACCACTTACCACCATAG  327
      |||||||||||||||||||||||||||
seq2  CCTATCACTTACCACTTACCACCATAG  327