BAC Information

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BAC

Clone NameB6Ng01-106N20
Chromosome2 (Build37)
Map Location 45,632,357 - 45,740,100
singlet/doubletdoublet
Overlap geneLOC666604
Upstream geneGtdc1, Zeb2, LOC100042661, LOC100041337
Downstream geneLOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106N20.bB6Ng01-106N20.g
ACCDH914485DH914486
length1,0971,078
definitionDH914485|Mus musculus domesticus DNA, BAC clone: B6Ng01-106N20, 5' end.DH914486|Mus musculus domesticus DNA, BAC clone: B6Ng01-106N20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,738,983 - 45,740,100)(45,632,357 - 45,633,462)
sequence
gaattctcattatcactttgctgtgttttcccacccttgcactcccccag
aagtatgactcttctgggtccagccatggatatagaatcatttggtacaa
atacaattacttaggggataatgtgattgctctgattgtccctccatctt
tctatttataaaattctaaactctttttgttctagaaattatctgtctct
aaattatgatgagacctcaaccaagttctctattttcccagaattgtggg
taatacctgaagtaaattagaacagtagaactccctgctgctcaatttgc
ctctagttatagagtctctatagtagaagtgtatttaatactaacaacat
gcagccaagttttcatttttgtttgcttgtttcttagttgttgttgttgt
tgctgttttacaatttttggataatgtacatatttttatatgataattca
tcacatacaggtaatctgagtaaaaatattctatattttctaccatccct
atgcattatgaagaaaataataaaagtcacaaatattaaagaagtaccac
taagaaacttacttgtagtagaaacttatagcagccatgattcatgagct
aacttttctcgcactatagcttgtgatgtctttcagtcagttcttgctca
gagatgggtattagccatacatcatatatgtaacatcaatataccattat
acagaaacagtaggttgcatttatttattcatttgtttttatgtatttag
ttatataaaataacaattaaattaaaatgtaaatataaaaggtccatgaa
tttaaaagggggtagagtcaagcatgggttgggttggagagaggaagtgg
gtatcatgtaattacatattaatttaaagaataagaaaaatataaaaacc
agaaaatatgttcaccctccttagccaccaataaggcaaattaaactgct
ttaacattctagcttacctagtcaaatgattcaatatgagaaaacaaaca
ttggggacatgtagaaagtggaatgtcaggcactgtagtagatttaacag
tgcaagcctatggaatcagtggggaaaagactattagactattagaa
gaattcttccttgagaacaagataatgaaaaccatacggtcattgaacac
aggaatctgcgtcactttgttcccttgcaacccgtttcatttcacaaagg
cgggtccgtccccgtgttgcctccagtcggagatcccagccagctggaat
cctgccctctgcaggcttgcccaaatcagggagtgttgtcattgagtttc
tgaggttcacctgaatgacagaagctgtgggaatgtggcaggccttgcca
accttctgcatctctaaagcaaagtgtcctttttagaatttgcgtgcatt
gtgctctgtaacctttattgtgggagctaaaagatgagtcaggatgagaa
gtcaagaactgggctgtcttaagagctctctcattgattaagagcatgta
ccacactgaagactgaaactgggttcccagtgtccacatctggtgactca
gtcagttttaaatagaacttcagagaaccctaaacccttacacttttgtc
ccccatggacacatacacaacgcgtgcgagtacatacacactggagcaca
tacgttcctacacacgcatatactttaaaataacaatattttggtgtttt
agtctcataactattattgattctttatgaatttcacatcgtgcacccaa
atgccactcatttcccaggccttctatatccaccctccacctttgcaata
tcaccccccccttcgtccttcccatggggaagaaaacaaaacaaaacaaa
gcaaagttttgccatggaatctgccgtgagtcacagtgtgccacacccct
tcgcccaaacagctttacttgctaatgctcattacaatgagtcattggtc
tggttcgaggcctctggctgcaccatcaatacaggttgatcctcaccagg
acttctctcatatatcttgttgccctgtgtcatggagatcctgcagtttg
gttctgccttcacgctctcagtagcacatagatcagcagtagatgttgga
gccctagatttgggcctggctagtaatgagttgcaactaccccctcttct
ctggttacatacacagcgcagctcttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_45738983_45740100
seq2: B6Ng01-106N20.b_47_1143 (reverse)

seq1  TTCTAATAAGTCTAATATGTCTATTTCCCCCACTGATTTCCATAGGGCTT  50
      ||||||| ||||||||| |||  ||| ||||||||| ||||||| |||||
seq2  TTCTAAT-AGTCTAATA-GTC--TTTTCCCCACTGA-TTCCATA-GGCTT  44

seq1  GCAACTGTTTAAAATCCTACTAACAGTGCTTGACCATTCCACTTTTCCTA  100
      || ||||||  |||| ||||| ||||||| ||| |||||||||||  |||
seq2  GC-ACTGTT--AAAT-CTACT-ACAGTGCCTGA-CATTCCACTTT--CTA  86

seq1  CATGTTCCCCAAATGTTTGTTTTCTCATATTGAATCATTTTGACTAAGGT  150
      |||||  ||| |||||||||||||||||||||||||| ||||||| ||||
seq2  CATGT--CCCCAATGTTTGTTTTCTCATATTGAATCA-TTTGACT-AGGT  132

seq1  AAGCTAGAATGTTAAAGCAGTTTAATTTGCCTTATTTGGTGGCTAAGGAG  200
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGCTAGAATGTTAAAGCAGTTTAATTTGCCTTA-TTGGTGGCTAAGGAG  181

seq1  GGTGAACATATTTTTCTGGTTTTTATATTTTTCTTATTCTTTTAAATTAA  250
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  GGTGAACATA-TTTTCTGGTTTTTATATTTTTCTTATTC-TTTAAATTAA  229

seq1  TATGTAATTACATGATACCCACTTCCTCTCTCCAACCCAACCCATGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAATTACATGATACCCACTTCCTCTCTCCAACCCAACCCATGCTTG  279

seq1  ACTCTACCCCCTTTTAAATTCATGGACCTTTTATATTTACATTTTAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACCCCCTTTTAAATTCATGGACCTTTTATATTTACATTTTAATTT  329

seq1  AATTGTTATTTTATATAACTAAATACATAAAAACAAATGAATAAATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTATTTTATATAACTAAATACATAAAAACAAATGAATAAATAAAT  379

seq1  GCAACCTACTGTTTCTGTATAATGGTATATTGATGTTACATATATGATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTACTGTTTCTGTATAATGGTATATTGATGTTACATATATGATGT  429

seq1  ATGGCTAATACCCATCTCTGAGCAAGAACTGACTGAAAGACATCACAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAATACCCATCTCTGAGCAAGAACTGACTGAAAGACATCACAAGC  479

seq1  TATAGTGCGAGAAAAGTTAGCTCATGAATCATGGCTGCTATAAGTTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGCGAGAAAAGTTAGCTCATGAATCATGGCTGCTATAAGTTTCTA  529

seq1  CTACAAGTAAGTTTCTTAGTGGTACTTCTTTAATATTTGTGACTTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGTAAGTTTCTTAGTGGTACTTCTTTAATATTTGTGACTTTTATT  579

seq1  ATTTTCTTCATAATGCATAGGGATGGTAGAAAATATAGAATATTTTTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTCATAATGCATAGGGATGGTAGAAAATATAGAATATTTTTACT  629

seq1  CAGATTACCTGTATGTGATGAATTATCATATAAAAATATGTACATTATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTACCTGTATGTGATGAATTATCATATAAAAATATGTACATTATCC  679

seq1  AAAAATTGTAAAACAGCAACAACAACAACAACTAAGAAACAAGCAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGTAAAACAGCAACAACAACAACAACTAAGAAACAAGCAAACAA  729

seq1  AAATGAAAACTTGGCTGCATGTTGTTAGTATTAAATACACTTCTACTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAACTTGGCTGCATGTTGTTAGTATTAAATACACTTCTACTATA  779

seq1  GAGACTCTATAACTAGAGGCAAATTGAGCAGCAGGGAGTTCTACTGTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCTATAACTAGAGGCAAATTGAGCAGCAGGGAGTTCTACTGTTCT  829

seq1  AATTTACTTCAGGTATTACCCACAATTCTGGGAAAATAGAGAACTTGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACTTCAGGTATTACCCACAATTCTGGGAAAATAGAGAACTTGGTT  879

seq1  GAGGTCTCATCATAATTTAGAGACAGATAATTTCTAGAACAAAAAGAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTCATCATAATTTAGAGACAGATAATTTCTAGAACAAAAAGAGTT  929

seq1  TAGAATTTTATAAATAGAAAGATGGAGGGACAATCAGAGCAATCACATTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTTATAAATAGAAAGATGGAGGGACAATCAGAGCAATCACATTA  979

seq1  TCCCCTAAGTAATTGTATTTGTACCAAATGATTCTATATCCATGGCTGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTAAGTAATTGTATTTGTACCAAATGATTCTATATCCATGGCTGGA  1029

seq1  CCCAGAAGAGTCATACTTCTGGGGGAGTGCAAGGGTGGGAAAACACAGCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGAGTCATACTTCTGGGGGAGTGCAAGGGTGGGAAAACACAGCA  1079

seq1  AAGTGATAATGAGAATTC  1118
      ||||||||||||||||||
seq2  AAGTGATAATGAGAATTC  1097

seq1: chr2_45632357_45633462
seq2: B6Ng01-106N20.g_68_1145

seq1  GAATTCTTCCTTGAGAACAAGATAATGAAAACCATACGGTCATTGAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTTGAGAACAAGATAATGAAAACCATACGGTCATTGAACAC  50

seq1  AGGAATCTGCGTCACTTTGTTCCCTTGCAACCCGTTTCATTTCACAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTGCGTCACTTTGTTCCCTTGCAACCCGTTTCATTTCACAAAGG  100

seq1  CGGGTCCGTCCCCGTGTTGCCTCCAGTCGGAGATCCCAGCCAGCTGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTCCGTCCCCGTGTTGCCTCCAGTCGGAGATCCCAGCCAGCTGGAAT  150

seq1  CCTGCCCTCTGCAGGCTTGCCCAAATCAGGGAGTGTTGTCATTGAGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCTCTGCAGGCTTGCCCAAATCAGGGAGTGTTGTCATTGAGTTTC  200

seq1  TGAGGTTCACCTGAATGACAGAAGCTGTGGGAATGTGGCAGGCCTTGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTCACCTGAATGACAGAAGCTGTGGGAATGTGGCAGGCCTTGCCA  250

seq1  ACCTTCTGCATCTCTAAAGCAAAGTGTCCTTTTTAGAATTTGCGTGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTGCATCTCTAAAGCAAAGTGTCCTTTTTAGAATTTGCGTGCATT  300

seq1  GTGCTCTGTAACCTTTATTGTGGGAGCTAAAAGATGAGTCAGGATGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTGTAACCTTTATTGTGGGAGCTAAAAGATGAGTCAGGATGAGAA  350

seq1  GTCAAGAACTGGGCTGTCTTAAGAGCTCTCTCATTGATTAAGAGCATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGAACTGGGCTGTCTTAAGAGCTCTCTCATTGATTAAGAGCATGTA  400

seq1  CCACACTGAAGACTGAAACTGGGTTCCCAGTGTCCACATCTGGTGACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTGAAGACTGAAACTGGGTTCCCAGTGTCCACATCTGGTGACTCA  450

seq1  GTCAGTTTTAAATAGAACTTCAGAGAACCCTAAACCCTTACACTTTTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTTTAAATAGAACTTCAGAGAACCCTAAACCCTTACACTTTTGTC  500

seq1  CCCCATGGACACATACACAACGCGTGCGAGTACATACACACTGGAGCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGGACACATACACAACGCGTGCGAGTACATACACACTGGAGCACA  550

seq1  TACGTTCCTACACACGCATATACTTTAAAATAACAATATTTTGGTGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTCCTACACACGCATATACTTTAAAATAACAATATTTTGGTGTTTT  600

seq1  AGTCTCATAACTATTATTGATTCTTTATGAATTTCACATCGTGCACCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCATAACTATTATTGATTCTTTATGAATTTCACATCGTGCACCCAA  650

seq1  ATGCCACTCATTTCCCAGGCCTTCTATATCCACCCTCCACCTTTGCAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACTCATTTCCCAGGCCTTCTATATCCACCCTCCACCTTTGCAATA  700

seq1  TCACCCCCCCCTTCGTCCTTCCCATGGGGAAGAAAACAAAACAAAACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCCCCCTTCGTCCTTCCCATGGGGAAGAAAACAAAACAAAACAAA  750

seq1  GCAAAGTTTTGCCATGGAATCTGCCGTGAGTCACAGTGTGCCACACCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTTTTGCCATGGAATCTGCCGTGAGTCACAGTGTGCCACACCCCT  800

seq1  TCGCCCAAACAGCTTTACTTGCTAATGCTCATTACAATGAGTCATTGGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCCAAACAGCTTTACTTGCTAATGCTCATTACAATGAGTCATTGGTC  850

seq1  TGGTTCGAGGCCTCTGGCTGCACCATCAATACAGGTTGATCCTCACCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCGAGGCCTCTGGCTGCACCATCAATACAGGTTGATCCTCACCAGG  900

seq1  ACTTCTCTCATATATCTTGTTGCCCTGTGTCATGGAGATCCTGCAGGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACTTCTCTCATATATCTTGTTGCCCTGTGTCATGGAGATCCTGCA-GTTT  949

seq1  GGTTCTGCCTTCACGCTCTCCAGTAGCACATAGATCCGGCAGTAGATGTT  1000
      ||||||||||||||||||| ||||||||||||||| | ||||||||||||
seq2  GGTTCTGCCTTCACGCTCT-CAGTAGCACATAGAT-CAGCAGTAGATGTT  997

seq1  GGAGCCCTAGATTTGGGCCTGGCTAGTAAATGAGTTTGCCAACCTACCCC  1050
      ||||||||||||||||||||||||||| |||||| ||||  | |||||||
seq2  GGAGCCCTAGATTTGGGCCTGGCTAGT-AATGAG-TTGC--AACTACCCC  1043

seq1  CTC-TCTCTGGTGGCCATACCACCAGCGCCAGCTC-TCCTAAACTCGCCA  1098
      ||| ||||||||   |||||   ||||| |||||| |||           
seq2  CTCTTCTCTGGT-TACATAC--ACAGCG-CAGCTCTTCC-----------  1078

seq1  GCTCTTCC  1106
              
seq2  --------  1078