BAC Information

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BAC

Clone NameB6Ng01-107A07
Chromosome2 (Build37)
Map Location 84,110,684 - 84,285,354
singlet/doubletdoublet
Overlap geneCalcrl, Tfpi
Upstream geneLOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725
Downstream geneLOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107A07.bB6Ng01-107A07.g
ACCDH914599DH914600
length1,119268
definitionDH914599|Mus musculus domesticus DNA, BAC clone: B6Ng01-107A07, 5' end.DH914600|Mus musculus domesticus DNA, BAC clone: B6Ng01-107A07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,284,212 - 84,285,354)(84,110,684 - 84,110,951)
sequence
gaattcactgtactctaatataagaaacttaaagctaaaatatcagtttt
taaaaaaatgtatgatatactttcatcaccaaaatggctagatagataat
gattcagtttttaacaaagtcattttacttacttttaatgagatataaaa
ataccttctagtttagtctttaagcttttaagactgatttttctaagtaa
gttaattatgaattttattaaaataactaaatgatttacaaaacaaaaat
atttctttctgatatactttgcaatttctagaaaggccagatttctgctt
cttggaagaggaccctggactctgccgaggttacatgaagaggtatcttt
ataacaaccagacaaagcagtgtgaacgattcgtgtacggtggctgcctg
ggcaaccgcaacaactttgaaactttggatgagtgcaagaagatctgtga
gaatccaggtaccttcccttctcatctcatgtaggtgcatatgcaggtat
cgcttaaaatgaggatcccctgagaatggactcagattctgtttaagttg
ggcaaacagaagttaggtttgaaagagattcaccattgtgtttaaacaaa
caaacaaacaaacaaacaaacaaacaaacaaacaaacagaaataaacaga
gaattaacacatctctacagttactgtgaatctcacaatgttttcagcta
aagtacttaactttcctcatagtactgcagaacatgttcagcaaaatggt
aggaatgctgaaatctcttattcttataaaatataagggttaatacttac
tcataaaaaataagaaaaaggaaaccttatgtattaactgttgcatgatt
tcagtcactagctacaaaattactaatgggaatcttaccttgcacatgta
tttaaaagtccttgtttcctggcttagagcatcagggaactcaattgcac
actttgctgttttgacacacagttacatttgcttgtctgtcagatatgaa
attttgttgtgtttcgaaagtaattgcttatggcttctctctaccagtcc
actccctcccagtgatgagtacgatgatgactacgtactgatggaattct
gtactgatcgagactgtaa
taaataacaagaatcacgtcacgttttctgatggaaaggatgaggatcgt
catggaagatcctttctgtgcttgtgagttcaagcctatttcctgttctc
tcttttatcagactctaggtatgtggctcttgatctatttgaagttggga
gttgtacagggtgatgttatggatatattttaatttttctacgtgaaatc
acctagtttgaccagcaccatttgatgaagatgctgtcttctctctagtg
tgtatttggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_84284212_84285354
seq2: B6Ng01-107A07.b_46_1164 (reverse)

seq1  TTACAGTACTGCGATCAGTTACAGTATTTCCATCAGTTACGTAGTCACTC  50
      ||||||| || ||||||| ||||| | ||||||||| |||||||||| ||
seq2  TTACAGT-CT-CGATCAG-TACAG-AATTCCATCAG-TACGTAGTCA-TC  44

seq1  ATCTGTACCTCATTCACTGGGGAAGGGGAGTGGACTGGGTAGAGGATAGA  100
      ||| ||| |||| ||||||||    ||||||||||| |||||||   |||
seq2  ATC-GTA-CTCA-TCACTGGG---AGGGAGTGGACT-GGTAGAG---AGA  84

seq1  AGCCATAAGCAATTACTATCTGAAAACACAACAGAATTTCATATCTTGAC  150
      ||||||||||||||||| ||   |||||||||| ||||||||||| ||||
seq2  AGCCATAAGCAATTACTTTC--GAAACACAACAAAATTTCATATC-TGAC  131

seq1  AGACAAGCAAATGTAACTGTTGTGTCAAAAACAGCAAAGTTGTTGCAATT  200
      ||||||||||||||||||| |||||| |||||||||||||   |||||||
seq2  AGACAAGCAAATGTAACTG-TGTGTC-AAAACAGCAAAGT--GTGCAATT  177

seq1  GAGTTCCCCTGATGCTCTAAGCCAGGAAACAAGGACTTTTAAATACATGT  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTT-CCCTGATGCTCTAAGCCAGGAAACAAGGACTTTTAAATACATGT  226

seq1  GCAAGGTAAGATTCCCATTAGTAATTTTGTAGCTAGTGACTGAAATCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCAAGGTAAGATTCCCATTAGTAATTTTGTAGCTAGTGACTGAAATCATG  276

seq1  CAACAGTTAATACATAAGGTTTCCTTTTTCTTATTTTTTATGAGTAAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTTAATACATAAGGTTTCCTTTTTCTTATTTTTTATGAGTAAGTA  326

seq1  TTAACCCTTATATTTTATAAGAATAAGAGATTTCAGCATTCCTACCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCTTATATTTTATAAGAATAAGAGATTTCAGCATTCCTACCATTT  376

seq1  TGCTGAACATGTTCTGCAGTACTATGAGGAAAGTTAAGTACTTTAGCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAACATGTTCTGCAGTACTATGAGGAAAGTTAAGTACTTTAGCTGA  426

seq1  AAACATTGTGAGATTCACAGTAACTGTAGAGATGTGTTAATTCTCTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTGTGAGATTCACAGTAACTGTAGAGATGTGTTAATTCTCTGTTT  476

seq1  ATTTCTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTT  526

seq1  AAACACAATGGTGAATCTCTTTCAAACCTAACTTCTGTTTGCCCAACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAATGGTGAATCTCTTTCAAACCTAACTTCTGTTTGCCCAACTTA  576

seq1  AACAGAATCTGAGTCCATTCTCAGGGGATCCTCATTTTAAGCGATACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATCTGAGTCCATTCTCAGGGGATCCTCATTTTAAGCGATACCTG  626

seq1  CATATGCACCTACATGAGATGAGAAGGGAAGGTACCTGGATTCTCACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCACCTACATGAGATGAGAAGGGAAGGTACCTGGATTCTCACAGA  676

seq1  TCTTCTTGCACTCATCCAAAGTTTCAAAGTTGTTGCGGTTGCCCAGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGCACTCATCCAAAGTTTCAAAGTTGTTGCGGTTGCCCAGGCAG  726

seq1  CCACCGTACACGAATCGTTCACACTGCTTTGTCTGGTTGTTATAAAGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGTACACGAATCGTTCACACTGCTTTGTCTGGTTGTTATAAAGATA  776

seq1  CCTCTTCATGTAACCTCGGCAGAGTCCAGGGTCCTCTTCCAAGAAGCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCATGTAACCTCGGCAGAGTCCAGGGTCCTCTTCCAAGAAGCAGA  826

seq1  AATCTGGCCTTTCTAGAAATTGCAAAGTATATCAGAAAGAAATATTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGCCTTTCTAGAAATTGCAAAGTATATCAGAAAGAAATATTTTTG  876

seq1  TTTTGTAAATCATTTAGTTATTTTAATAAAATTCATAATTAACTTACTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAAATCATTTAGTTATTTTAATAAAATTCATAATTAACTTACTTA  926

seq1  GAAAAATCAGTCTTAAAAGCTTAAAGACTAAACTAGAAGGTATTTTTATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATCAGTCTTAAAAGCTTAAAGACTAAACTAGAAGGTATTTTTATA  976

seq1  TCTCATTAAAAGTAAGTAAAATGACTTTGTTAAAAACTGAATCATTATCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTAAAAGTAAGTAAAATGACTTTGTTAAAAACTGAATCATTATCT  1026

seq1  ATCTAGCCATTTTGGTGATGAAAGTATATCATACATTTTTTTAAAAACTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCCATTTTGGTGATGAAAGTATATCATACATTTTTTTAAAAACTG  1076

seq1  ATATTTTAGCTTTAAGTTTCTTATATTAGAGTACAGTGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAGCTTTAAGTTTCTTATATTAGAGTACAGTGAATTC  1119

seq1: chr2_84110684_84110951
seq2: B6Ng01-107A07.g_73_340

seq1  TAAATAACAAGAATCACGTCACGTTTTCTGATGGAAAGGATGAGGATCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAACAAGAATCACGTCACGTTTTCTGATGGAAAGGATGAGGATCGT  50

seq1  CATGGAAGATCCTTTCTGTGCTTGTGAGTTCAAGCCTATTTCCTGTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAGATCCTTTCTGTGCTTGTGAGTTCAAGCCTATTTCCTGTTCTC  100

seq1  TCTTTTATCAGACTCTAGGTATGTGGCTCTTGATCTATTTGAAGTTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATCAGACTCTAGGTATGTGGCTCTTGATCTATTTGAAGTTGGGA  150

seq1  GTTGTACAGGGTGATGTTATGGATATATTTTAATTTTTCTACGTGAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTACAGGGTGATGTTATGGATATATTTTAATTTTTCTACGTGAAATC  200

seq1  ACCTAGTTTGACCAGCACCATTTGATGAAGATGCTGTCTTCTCTCTAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTTTGACCAGCACCATTTGATGAAGATGCTGTCTTCTCTCTAGTG  250

seq1  TGTATTTGGGGGGGGGGG  268
      ||||||||||||||||||
seq2  TGTATTTGGGGGGGGGGG  268