BAC Information

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BAC

Clone NameB6Ng01-107F21
Chromosome2 (Build37)
Map Location 6,329,531 - 6,330,680
singlet/doubletsinglet
Overlap geneUsp6nl
Upstream geneCamk1d, LOC666599, Cdc123, Nudt5, Sec61a2, Dhtkd1, Upf2, LOC100040343, 5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik
Downstream geneLOC100040387, Cugbp2, LOC100040659, LOC100040648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107F21.bB6Ng01-107F21.g
ACCDH914853DH914854
length1,1451,223
definitionDH914853|Mus musculus domesticus DNA, BAC clone: B6Ng01-107F21, 5' end.DH914854|Mus musculus domesticus DNA, BAC clone: B6Ng01-107F21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcaaaaaaaaaaaaaaaaaccaaaccacccaacaacttagtca
tcaaaagcacttgctagagtttagtaaacttaactaacagagaattgaaa
tttataggttttgttgctttgcagagtacttcagatttttcttttaaact
ttttttttgtagtatacatagagtttttctgattgtctttaaaatactag
aaaccacaaacaggccctttcgctgtctcctcacgcacatgaggcatgat
gtacgattcataacttcagctttccactgtagtacatgctagtctcatat
catccagattacaaacaagttaggcaaggcattttgctctctgggacagt
gtaacttcgaaaacattttctttggctttgttacattgtgatttatatgt
aaagaaacttcaaacagtaacattagatttgaattttcttttagcaaaag
caactggaaatcgaaaggacttccaagtggctgaaaatgctgaaaaaatg
ggagagatacaagaacaccgagaaggtatgcacgggtcgggctttgtcct
tccgtattccaaggcttacctctgtgctcacatgtgaggttttagtttac
tgaggcctaacgtttgatcttagaagtcttcctgttggaaatagtagaat
ccctagttgagagtggctccaactgtctgagctaagctgcctgcatggtg
cagaggcagagtttagagtgccactgggttcagctgctctgctgggtcgg
ggtgtcccctgcctctgctctggctctgccctggggtcagacattgctgt
agttccagacttcacatccacatcctgttgctcaggagagggcttgcctt
tggacacttttctagaagcaggagtgttctccttttccagagctctcggg
aaccctccttttggtctgcactgaatccatgctaagttttaacccaagca
ttggaatgggggcaggggtagggagctggggagcggccaggaccacagat
tcctttgtgcgagccttgatgatctgcctcgaatccttcaaggccacata
ataagctgtcctcacatggccacaggaggcccgcagcatgcctttcagtt
gttgtcaggagcaaacaccgtggtattaatgtagaaatgtctgcc
gaattcactacatagaccaggctggcttccaactcacagatacatcagct
tctgccttctaaatgctgggattaaagacctagcagtccatttcttttca
atttagcctcacacagattctcaggagatagacagaaaacagccagattc
tttgccaaaatatcatagaagcaatggcctgtagctgtgttgctaaagtt
gttacccctgtggggcctctggagccaggtctttactatctcagcacttc
tggcttcacagacccattagaacatacaacatttacctactttcctagtc
caagtttcaaagtcttccgatcactccaaaaagcaacatgcccacgttct
tctcaaaaacaatactctctggtaccaatttctgtgttggttacttttct
gttgctctgaaaaaaagaagaagaagaaagcatgactaaaggcaacttaa
ggatgaaagggtttatttgggcttatagtttcaggggaggcatggtggca
tgagaccagagcaggaagctgagagagagagcaagtctcaagccctcaac
cacacataggaaacacagtgccctggaagtgaggtggggctgtagagacc
ctcagagctcacctctagtaacatgcttcctccagtaagactcctaaagg
ttccagaaccttctccaaaagtaccaggtttcctagaggggaaatttatc
aaacacaccaccacagagaaataatgtttgctgggttatactaatggcaa
attagcagcatagtccacaaactgggagaaacattttgttgccttctaaa
tggccctggcctgtcacacccatactctttacatgacagaaataggccta
tacacagactgagaacccacaaaacctacacatagggtgagttctccttt
gccttgattttctgaattttttttattagaaaagtcaaaacatgagagca
gatttacactatatttcagaactctattatgggggtcaaatggaactttg
tcttgcatagaaatgaacaactcatagttccctttggacctacctaggaa
tcagaagaaatgcacactttctaactcgtaaggtgtgcagtctttctgat
gctcatgccatttcggaccggtaagcaacttcggaaccttaaaaaaacca
aattcttcggtcaggcctcctgaatgctcctatgacagggtagagagtac
agtacttctaatgtgcactcgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_6329531_6330680
seq2: B6Ng01-107F21.b_42_1186

seq1  GAATTCTTCAAAAAAAAAAAAAAAAACCAAACCACCCAACAACTTAGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAAAAAAAAAAAAAAAAACCAAACCACCCAACAACTTAGTCA  50

seq1  TCAAAAGCACTTGCTAGAGTTTAGTAAACTTAACTAACAGAGAATTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCACTTGCTAGAGTTTAGTAAACTTAACTAACAGAGAATTGAAA  100

seq1  TTTATAGGTTTTGTTGCTTTGCAGAGTACTTCAGATTTTTCTTTTAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGGTTTTGTTGCTTTGCAGAGTACTTCAGATTTTTCTTTTAAACT  150

seq1  TTTTTTTTGTAGTATACATAGAGTTTTTCTGATTGTCTTTAAAATACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGTAGTATACATAGAGTTTTTCTGATTGTCTTTAAAATACTAG  200

seq1  AAACCACAAACAGGCCCTTTCGCTGTCTCCTCACGCACATGAGGCATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACAAACAGGCCCTTTCGCTGTCTCCTCACGCACATGAGGCATGAT  250

seq1  GTACGATTCATAACTTCAGCTTTCCACTGTAGTACATGCTAGTCTCATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGATTCATAACTTCAGCTTTCCACTGTAGTACATGCTAGTCTCATAT  300

seq1  CATCCAGATTACAAACAAGTTAGGCAAGGCATTTTGCTCTCTGGGACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGATTACAAACAAGTTAGGCAAGGCATTTTGCTCTCTGGGACAGT  350

seq1  GTAACTTCGAAAACATTTTCTTTGGCTTTGTTACATTGTGATTTATATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTCGAAAACATTTTCTTTGGCTTTGTTACATTGTGATTTATATGT  400

seq1  AAAGAAACTTCAAACAGTAACATTAGATTTGAATTTTCTTTTAGCAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACTTCAAACAGTAACATTAGATTTGAATTTTCTTTTAGCAAAAG  450

seq1  CAACTGGAAATCGAAAGGACTTCCAAGTGGCTGAAAATGCTGAAAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGAAATCGAAAGGACTTCCAAGTGGCTGAAAATGCTGAAAAAATG  500

seq1  GGAGAGATACAAGAACACCGAGAAGGTATGCACGGGTCGGGCTTTGTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGATACAAGAACACCGAGAAGGTATGCACGGGTCGGGCTTTGTCCT  550

seq1  TCCGTATTCCAAGGCTTACCTCTGTGCTCACATGTGAGGTTTTAGTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTATTCCAAGGCTTACCTCTGTGCTCACATGTGAGGTTTTAGTTTAC  600

seq1  TGAGGCCTAACGTTTGATCTTAGAAGTCTTCCTGTTGGAAATAGTAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCTAACGTTTGATCTTAGAAGTCTTCCTGTTGGAAATAGTAGAAT  650

seq1  CCCTAGTTGAGAGTGGCTCCAACTGTCTGAGCTAAGCTGCCTGCATGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGTTGAGAGTGGCTCCAACTGTCTGAGCTAAGCTGCCTGCATGGTG  700

seq1  CAGAGGCAGAGTTTAGAGTGCCACTGGGTTCAGCTGCTCTGCTGGGTCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGAGTTTAGAGTGCCACTGGGTTCAGCTGCTCTGCTGGGTCGG  750

seq1  GGTGTCCCCTGCCTCTGCTCTGGCTCTGCCCTGGGGTCAGACATTGCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCCCTGCCTCTGCTCTGGCTCTGCCCTGGGGTCAGACATTGCTGT  800

seq1  AGTTCCAGACTTCACATCCACATCCTGTTGCTCAGGAGAGGGCTTGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGACTTCACATCCACATCCTGTTGCTCAGGAGAGGGCTTGCCTT  850

seq1  TGGACACTTTTCTAGAAGCAGGAGTGTTCTCC-TTTCCAGAGCTCTCGGG  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGGACACTTTTCTAGAAGCAGGAGTGTTCTCCTTTTCCAGAGCTCTCGGG  900

seq1  AACCCTCCTTTTGGTCTGCACTGAATCCATGCTAAGTTTTAACCCAAGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCCTTTTGGTCTGCACTGAATCCATGCTAAGTTTTAACCCAAGCA  950

seq1  TTGGAATGGGGGCAGGGGTAGGGAGCTGGGGAGCGGCAGGGACCACAGA-  998
      |||||||||||||||||||||||||||||||||||||  |||||||||| 
seq2  TTGGAATGGGGGCAGGGGTAGGGAGCTGGGGAGCGGCCAGGACCACAGAT  1000

seq1  TCCCTTGTGCGAGCC-TGATGATCTGCCTCGTATCC-TCAGAGCCACATA  1046
      ||| ||||||||||| ||||||||||||||| |||| |||  ||||||||
seq2  TCCTTTGTGCGAGCCTTGATGATCTGCCTCGAATCCTTCAAGGCCACATA  1050

seq1  AATAAAGCTGTCCTCACATGGCCACAGGAGGCCCGCAGCATGCCTTTCAA  1096
      |   ||||||||||||||||||||||||||||||||||||||||||||| 
seq2  A--TAAGCTGTCCTCACATGGCCACAGGAGGCCCGCAGCATGCCTTTCA-  1097

seq1  GTTTGTTGTCAGGAGCAACACACACAGTGTATTTATTGTAAGGAAATGTC  1146
        ||||||||||||||||   |||| |||   ||| ||||  ||||||||
seq2  -GTTGTTGTCAGGAGCAA---ACACCGTGGTATTAATGTA--GAAATGTC  1141

seq1  TGCC  1150
      ||||
seq2  TGCC  1145