BAC Information

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BAC

Clone NameB6Ng01-107H22
Chromosome2 (Build37)
Map Location 105,124,916 - 105,306,954
singlet/doubletdoublet
Overlap gene0610012H03Rik, Rcn1
Upstream geneD430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1
Downstream genePax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107H22.bB6Ng01-107H22.g
ACCDH914951DH914952
length1,2161,103
definitionDH914951|Mus musculus domesticus DNA, BAC clone: B6Ng01-107H22, 5' end.DH914952|Mus musculus domesticus DNA, BAC clone: B6Ng01-107H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,305,715 - 105,306,954)(105,124,916 - 105,126,033)
sequence
gaattctacattctacattcacatatagagttcaccttttcactctatga
tagaataaaactattcaggcaaatcttgctcacataaaagcctatgcaac
ctgcaaggtacgtgtccagtgtctgacatatagcaggtccttgataagtg
tttgctgaagaatagaaagtaattgactgagcatacaattgtttcccagc
gtgtcctgttagttgccacccgttaaagaaaaatcagtaagtaaatatgt
tccctttgattctaacattcattcttttttttcttatacttcgtcactga
ctaagatgctaaagcaacagtgcgggaggagggactggtggaacaggcag
gccaaggctttagcatgagggaaaagggggtgtcacaaaccaccaaagtg
ctacttcttagggaagaagtgcaccctggatttcttccagctgaactaga
caacaaaacccagggaaaatgaacattaatcttttatgaaccaaagcccc
tgaacgaacaggcttggagttcaaccctaattaggttgcatctcaatgca
gagaatccttaacgaacgaggacatctaacaactccagcaagcactctgc
tgggaccaatgctgaagtgaaggcaccgcttggccacactccactgctag
ggagcataaggggcccctggccttacctggaaaaatgatcggtcgtcttg
gaagaagagcaactggagtttcctcaaactgaaattcttggccaccctgc
tactgcgtggccatctgggtggcgtgtggataaataagatgagaaaaggc
aagatgcaagacccttggagcaagtttcagcaagtcgaggcttcccttgc
tttgtgtccaacatagctgccaacactggctctgctcacaagcaagataa
ttgcatgtgcgttatgcacacataggaggcagattcagttacagattcag
ttcaacctccattcaactcttcccagtcccatgactcagcccagtttcct
gctctctctgagcatcatttctctctatacatgagaaagagtgctgctgg
gagcgggggtcagtgtgaaatgatcgatggagtctaagatgctcatttct
cagccacagcttttctaacactcactcctcacctttactgaacacctggt
tagatgtttggtattccatgaaagcaaccgttagcttgggtccaaggtgc
cggaaacaaggcacac
gaattcataggctattttccacactgtctacactgcttctccttccaccc
tggtgtacctggcttaattttactccctgatttaaatctcaatctagttg
ctctggcatctcaatttaggggaagattggacgttgtttttcaaagagaa
ttgcaagcgttttactcttgtctgaagagacagattgtgccttccttccc
aaggataagcccagaaattacatgtaaatcttggaggttttatttgtagc
agaatgttttcagacctcacgttcacacattagtgtaaatgaataaaaca
gagacggcaggaaaccccccagcagacagtgtgcatgtttcagattggct
cccagtgcctcctgtctgctttgaacacattgtgttgactctggagcttc
aaaggcttcattgtggattttgtaggcaatgtgacaatgtgggactaaga
gcaccaaaaagagcttttgatcacaaacaaacaatattattttgtaggaa
accagagagtacctttgaaaattcaatttactttaagatttgcccgagaa
gggcaagtgcacttttagatgttgtctttaattttgcttcaagggttcaa
atgcaaactctgcatgttcgtgtgtgtgcttgtatgtatgtgtgcacacg
tgtgctcaggtgcggttccatctgcccttttctcttttttaagacaaggt
ctgtctctcagtggcttggaatccacaaattaggttaggctgcctggcca
gctctaagggctccacctgcccctgcctttgcagggctggagttagaagc
accctggacacccagctctttacatgtgtttggagagtcttacttgactc
tcatgattgcttggtgaatactctattgattgaattgcctcctcatcact
atagtgcaaacatttgaaatgttcagactaatgactctctgcatgctcac
tccccagtgaacattttacaaaggaaccacatttgggagtaccatcgcta
gctgtctcaggatagatgctatagctctttagagcttaacgctggataag
gagggacgactaagacagctgccagtctgatgaaaaatactgaacattga
cag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_105305715_105306954
seq2: B6Ng01-107H22.b_45_1260 (reverse)

seq1  GTGTGCCTTG-CTCTGCCACCTTGGGGCCATAGCTTAACCTGTCTGCTTT  49
      ||||||||||  || | ||||||||  ||| ||| ||||  |  ||| ||
seq2  GTGTGCCTTGTTTCCGGCACCTTGGACCCA-AGC-TAAC--GGTTGC-TT  45

seq1  TCAATGGGGATCTCCAAACTACTCTACCGGGTTGTTTCAGGTAGAGTGAG  99
      |||    |||   ||||||  ||  ||| |||   |||||  |  |||||
seq2  TCA---TGGAATACCAAACATCT-AACCAGGT--GTTCAGTAAAGGTGAG  89

seq1  GAGTTGAGTGGTTAGGAAAAGCTGTGGCTGAAGAAATGAGCAATCTGAGA  149
      ||| ||||| |||| ||||||||||||||| |||||||||| |||| |||
seq2  GAG-TGAGT-GTTA-GAAAAGCTGTGGCTG-AGAAATGAGC-ATCTTAGA  134

seq1  CTCATTCGGTTCATTTCACACTGACCCCCGCTCCCAGGCAGCACTCTTTC  199
      |||  || | |||||||||||||||||||||||||| |||||||||||| 
seq2  CTCCATC-GATCATTTCACACTGACCCCCGCTCCCA-GCAGCACTCTTT-  181

seq1  CTCATGTTATAGAGGAGGAAATGATGGCTCAGAGAGAGCAGGAAACTGGG  249
      |||||| |||||||   |||||||| ||||||||||||||||||||||||
seq2  CTCATG-TATAGAG--AGAAATGAT-GCTCAGAGAGAGCAGGAAACTGGG  227

seq1  CCTGAGTCATGGGACTGGGAAGGAGTTGAATGGAGGTTGAACTGAATCTG  299
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  -CTGAGTCATGGGACTGGGAA-GAGTTGAATGGAGGTTGAACTGAATCTG  275

seq1  TAACTGAATCTGCCTCCTATGTGTGCATAACGCACATGCAATTATCTTGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAATCTGCCTCCTATGTGTGCATAACGCACATGCAATTATCTTGC  325

seq1  TTGTGAGCAGAGCCAGTGTTGGCAGCTATGTTGGACACAAAGCAAGGGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCAGAGCCAGTGTTGGCAGCTATGTTGGACACAAAGCAAGGGAA  375

seq1  GCCTCGACTTGCTGAAACTTGCTCCAAGGGTCTTGCATCTTGCCTTTTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGACTTGCTGAAACTTGCTCCAAGGGTCTTGCATCTTGCCTTTTCT  425

seq1  CATCTTATTTATCCACACGCCACCCAGATGGCCACGCAGTAGCAGGGTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTATTTATCCACACGCCACCCAGATGGCCACGCAGTAGCAGGGTGG  475

seq1  CCAAGAATTTCAGTTTGAGGAAACTCCAGTTGCTCTTCTTCCAAGACGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAATTTCAGTTTGAGGAAACTCCAGTTGCTCTTCTTCCAAGACGAC  525

seq1  CGATCATTTTTCCAGGTAAGGCCAGGGGCCCCTTATGCTCCCTAGCAGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCATTTTTCCAGGTAAGGCCAGGGGCCCCTTATGCTCCCTAGCAGTG  575

seq1  GAGTGTGGCCAAGCGGTGCCTTCACTTCAGCATTGGTCCCAGCAGAGTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGGCCAAGCGGTGCCTTCACTTCAGCATTGGTCCCAGCAGAGTGC  625

seq1  TTGCTGGAGTTGTTAGATGTCCTCGTTCGTTAAGGATTCTCTGCATTGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGAGTTGTTAGATGTCCTCGTTCGTTAAGGATTCTCTGCATTGAG  675

seq1  ATGCAACCTAATTAGGGTTGAACTCCAAGCCTGTTCGTTCAGGGGCTTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACCTAATTAGGGTTGAACTCCAAGCCTGTTCGTTCAGGGGCTTTG  725

seq1  GTTCATAAAAGATTAATGTTCATTTTCCCTGGGTTTTGTTGTCTAGTTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAAAAGATTAATGTTCATTTTCCCTGGGTTTTGTTGTCTAGTTCA  775

seq1  GCTGGAAGAAATCCAGGGTGCACTTCTTCCCTAAGAAGTAGCACTTTGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAGAAATCCAGGGTGCACTTCTTCCCTAAGAAGTAGCACTTTGGT  825

seq1  GGTTTGTGACACCCCCTTTTCCCTCATGCTAAAGCCTTGGCCTGCCTGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTGACACCCCCTTTTCCCTCATGCTAAAGCCTTGGCCTGCCTGTT  875

seq1  CCACCAGTCCCTCCTCCCGCACTGTTGCTTTAGCATCTTAGTCAGTGACG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGTCCCTCCTCCCGCACTGTTGCTTTAGCATCTTAGTCAGTGACG  925

seq1  AAGTATAAGAAAAAAAAGAATGAATGTTAGAATCAAAGGGAACATATTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAAGAAAAAAAAGAATGAATGTTAGAATCAAAGGGAACATATTTA  975

seq1  CTTACTGATTTTTCTTTAACGGGTGGCAACTAACAGGACACGCTGGGAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGATTTTTCTTTAACGGGTGGCAACTAACAGGACACGCTGGGAAA  1025

seq1  CAATTGTATGCTCAGTCAATTACTTTCTATTCTTCAGCAAACACTTATCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTATGCTCAGTCAATTACTTTCTATTCTTCAGCAAACACTTATCA  1075

seq1  AGGACCTGCTATATGTCAGACACTGGACACGTACCTTGCAGGTTGCATAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTGCTATATGTCAGACACTGGACACGTACCTTGCAGGTTGCATAG  1125

seq1  GCTTTTATGTGAGCAAGATTTGCCTGAATAGTTTTATTCTATCATAGAGT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTATGTGAGCAAGATTTGCCTGAATAGTTTTATTCTATCATAGAGT  1175

seq1  GAAAAGGTGAACTCTATATGTGAATGTAGAATGTAGAATTC  1240
      |||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGTGAACTCTATATGTGAATGTAGAATGTAGAATTC  1216

seq1: chr2_105124916_105126033
seq2: B6Ng01-107H22.g_65_1167

seq1  GAATTCATAGGCTATTTTCCACACTGTCTACACTGCTTCTCCTTCCACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGGCTATTTTCCACACTGTCTACACTGCTTCTCCTTCCACCC  50

seq1  TGGTGTACCTGGCTTAATTTTACTCCCTGATTTAAATCTCAATCTAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTACCTGGCTTAATTTTACTCCCTGATTTAAATCTCAATCTAGTTG  100

seq1  CTCTGGCATCTCAATTTAGGGGAAGATTGGACGTTGTTTTTCAAAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCATCTCAATTTAGGGGAAGATTGGACGTTGTTTTTCAAAGAGAA  150

seq1  TTGCAAGCGTTTTACTCTTGTCTGAAGAGACAGATTGTGCCTTCCTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGCGTTTTACTCTTGTCTGAAGAGACAGATTGTGCCTTCCTTCCC  200

seq1  AAGGATAAGCCCAGAAATTACATGTAAATCTTGGAGGTTTTATTTGTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATAAGCCCAGAAATTACATGTAAATCTTGGAGGTTTTATTTGTAGC  250

seq1  AGAATGTTTTCAGACCTCACGTTCACACATTAGTGTAAATGAATAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTTTCAGACCTCACGTTCACACATTAGTGTAAATGAATAAAACA  300

seq1  GAGACGGCAGGAAACCCCCCAGCAGACAGTGTGCATGTTTCAGATTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGGCAGGAAACCCCCCAGCAGACAGTGTGCATGTTTCAGATTGGCT  350

seq1  CCCAGTGCCTCCTGTCTGCTTTGAACACATTGTGTTGACTCTGGAGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGCCTCCTGTCTGCTTTGAACACATTGTGTTGACTCTGGAGCTTC  400

seq1  AAAGGCTTCATTGTGGATTTTGTAGGCAATGTGACAATGTGGGACTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTTCATTGTGGATTTTGTAGGCAATGTGACAATGTGGGACTAAGA  450

seq1  GCACCAAAAAGAGCTTTTGATCACAAACAAACAATATTATTTTGTAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAAAAAGAGCTTTTGATCACAAACAAACAATATTATTTTGTAGGAA  500

seq1  ACCAGAGAGTACCTTTGAAAATTCAATTTACTTTAAGATTTGCCCGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGAGTACCTTTGAAAATTCAATTTACTTTAAGATTTGCCCGAGAA  550

seq1  GGGCAAGTGCACTTTTAGATGTTGTCTTTAATTTTGCTTCAAGGGTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGTGCACTTTTAGATGTTGTCTTTAATTTTGCTTCAAGGGTTCAA  600

seq1  ATGCAAACTCTGCATGTTCGTGTGTGTGCTTGTATGTATGTGTGCACACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAACTCTGCATGTTCGTGTGTGTGCTTGTATGTATGTGTGCACACG  650

seq1  TGTGCTCAGGTGCGGTTCCATCTGCCCTTTTCTCTTTTTTAAGACAAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCAGGTGCGGTTCCATCTGCCCTTTTCTCTTTTTTAAGACAAGGT  700

seq1  CTGTCTCTCAGTGGCTTGGAATCCACAAATTAGGTTAGGCTGCCTGGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTCAGTGGCTTGGAATCCACAAATTAGGTTAGGCTGCCTGGCCA  750

seq1  GCTCTAAGGGCTCCACCTGCCCCTGCCTTTGCAGGGCTGGAGTTAGAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAGGGCTCCACCTGCCCCTGCCTTTGCAGGGCTGGAGTTAGAAGC  800

seq1  ACCCTGGACACCCAGCTCTTTACATGTGTTTGGAGAGTCTTACTTGACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGACACCCAGCTCTTTACATGTGTTTGGAGAGTCTTACTTGACTC  850

seq1  TCATGATTGCTTGGTGAATACTCTATTGATTGAATTGCCTCCTCATCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATTGCTTGGTGAATACTCTATTGATTGAATTGCCTCCTCATCACT  900

seq1  ATAGTGCAAACATTTGAAATGTTCAGACTAATGACTCCTCTGCATGCTCA  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATAGTGCAAACATTTGAAATGTTCAGACTAATGACT-CTCTGCATGCTCA  949

seq1  CTCCCCAGGTGAACATTTTACAAAGGAACCACATTTGGGAGTACCATCGC  1000
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCA-GTGAACATTTTACAAAGGAACCACATTTGGGAGTACCATCGC  998

seq1  TAGCTGTCTCCAGGATTAGATGCTATAGCTCTTTAGAGCTTAACGCCTGC  1050
      ||||||||| ||||| ||||||||||||||||||||||||||||| ||| 
seq2  TAGCTGTCT-CAGGA-TAGATGCTATAGCTCTTTAGAGCTTAACG-CTG-  1044

seq1  GATACAGGAGGGGACCGACTAAGACAAGGCCTGCCAGGTTCTGATGGAAA  1100
      |||| |||||||   |||||||||||    |||||||  |||||| ||||
seq2  GATA-AGGAGGG--ACGACTAAGACA---GCTGCCAG--TCTGAT-GAAA  1085

seq1  AATACTGACATTTGACAG  1118
      ||||||||   |||||||
seq2  AATACTGAACATTGACAG  1103