BAC Information

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BAC

Clone NameB6Ng01-107M01
Chromosome2 (Build37)
Map Location 24,966,411 - 24,967,406
singlet/doubletsinglet
Overlap genenone
Upstream geneIl1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1
Downstream geneNrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107M01.g
ACCDH915126
length1,020
definitionDH915126|Mus musculus domesticus DNA, BAC clone: B6Ng01-107M01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactctgtggacgttcttggtttcaaacagtctgcctccctaggt
tgtgcctttccatccccctccctgtgttcctgagaaccaaggtttggggt
caaggttcaagctctgggcgtaggccatctgtcttactgtcccagacctg
ctagcaaggcctcctgccagcaagcccaggatgtccttatagcaacagct
gtcccaggtctggtgtggagagggatgtggccagagcccatgagggaatg
tggataaactgagaggcaggaaggactggagcagaaggcttcagcagtca
gcagtgttcagctggcttcccagctctacagctcaggatccctgcccagg
gagtactcccataaccactctacatagctctacagcccgggagtgctctc
ctaaccacctcctggagcctaccctcttgtggctttgcagaatgccacag
aacttgcttatctcatccattcagatgaacgcctctctgcatcctgttgt
tcttatgtcataagaacaggatgtagcaattgtttgcaatgtgcgtcagc
atgcccctggacctggccccatctcggtggtgcccagcgccatagagacc
cactcctgcccataggcgtgacccacggccgatacagactcctagggctc
tccactgacacatgactgcccacagtgtgcatgagggagactgatcatta
gggaggttaccatggagatgtttgtcatgcactgggccacatcctccaga
aagacaaggctgttagtgccactggggccccaacactggaaaggacagta
cacaacaggcccgtgggaactatgggaggaaacttctagcagaggctgga
aggtcacacaaggggagtgccttcagctggaaccagagtgtcttagtgac
agaatgaaggagctaaaggattgaatgtccttagctttgttgccaagtct
actgggagttaacagcaaagctgctccctgtttgttttcttggagttttc
caagatccctcaaacctttg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_24966411_24967406
seq2: B6Ng01-107M01.g_97_1083

seq1  AGTCTGCCTCCCTAGGTTGTAGCTTTCCATCCCCCTCCCTGTGTTCCTGA  50
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  AGTCTGCCTCCCTAGGTTGTGCCTTTCCATCCCCCTCCCTGTGTTCCTGA  50

seq1  GAAGCAGGGTTTGGGGTCAAGGTTCAAGCTCTGGCCAGAGGCCATCTGTC  100
      ||| || ||||||||||||||||||||||||||| |  ||||||||||||
seq2  GAACCAAGGTTTGGGGTCAAGGTTCAAGCTCTGGGCGTAGGCCATCTGTC  100

seq1  TTACTGTCCCAGACCTGCTAGCAAGGCCTCCTGCCAGCAAGCCCAGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTCCCAGACCTGCTAGCAAGGCCTCCTGCCAGCAAGCCCAGGATG  150

seq1  TCCTTATAGCAACAGCTGTCCCAGGTCTGGTGTGGAGAGGGATGTGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATAGCAACAGCTGTCCCAGGTCTGGTGTGGAGAGGGATGTGGCCA  200

seq1  GAGCCCATGAGGGAATGTGGATAAACTGAGAGGCAGGAAGGACTGGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCATGAGGGAATGTGGATAAACTGAGAGGCAGGAAGGACTGGAGCA  250

seq1  GAAGGCTTCAGCAGTCAGCAGTGTTCAGCTGGCTTCCCAGCTCTACAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTTCAGCAGTCAGCAGTGTTCAGCTGGCTTCCCAGCTCTACAGCT  300

seq1  CAGGATCCCTGCCCAGGGAGTACTCCCATAACCACTCTACATAGCTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCCCTGCCCAGGGAGTACTCCCATAACCACTCTACATAGCTCTAC  350

seq1  AGCCCGGGAGTGCTCTCCTAACCACCTCCTGGAGCCTACCCTCTTGTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGGGAGTGCTCTCCTAACCACCTCCTGGAGCCTACCCTCTTGTGGC  400

seq1  TTTGCAGAATGCCACAGAACTTGCTTATCTCATCCATTCAGATGAACGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGAATGCCACAGAACTTGCTTATCTCATCCATTCAGATGAACGCC  450

seq1  TCTCTGCATCCTGTTGTTCTTATGTCATAAGAACAGGATGTAGCAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCATCCTGTTGTTCTTATGTCATAAGAACAGGATGTAGCAATTGT  500

seq1  TTGCAATGTGCGTCAGCATGCCCCTGGACCTGGCCCCATCTCGGTGGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATGTGCGTCAGCATGCCCCTGGACCTGGCCCCATCTCGGTGGTGC  550

seq1  CCAGCGCCATAGAGACCCACTCCTGCCCATAGGCGTGACCCACGGCCGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGCCATAGAGACCCACTCCTGCCCATAGGCGTGACCCACGGCCGAT  600

seq1  ACAGACTCCTAGGGCTCTCCACTGACACATGACTGCCCACAGTGTGCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTCCTAGGGCTCTCCACTGACACATGACTGCCCACAGTGTGCATG  650

seq1  AGGGAGACTGATCATTAGGGAGGTTACCATGGAGATGTTTGTCATGCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGACTGATCATTAGGGAGGTTACCATGGAGATGTTTGTCATGCACT  700

seq1  GGGCCACATCCTCCAGAAAGACAAGGCTGTTAGTGCCACT-GGGCCCCAA  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGGCCACATCCTCCAGAAAGACAAGGCTGTTAGTGCCACTGGGGCCCCAA  750

seq1  CACTGGAAAGGACAGTACACAACAGGCCCGTGGGGAACTATGGGAGGAAA  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CACTGGAAAGGACAGTACACAACAGGCCCGT-GGGAACTATGGGAGGAAA  799

seq1  CTTCTAGCAAGAGGCTGGAAGGTCACAACAAGGGGAGTGCCTTCAGGCTG  849
      |||||||| ||||||||||||||||| |||||||||||||||||| ||||
seq2  CTTCTAGC-AGAGGCTGGAAGGTCAC-ACAAGGGGAGTGCCTTCA-GCTG  846

seq1  GAACCCAGAGTGTC-TAGTGACAGAATGAAGGAGCTAAAGGATTGAATGT  898
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAA-CCAGAGTGTCTTAGTGACAGAATGAAGGAGCTAAAGGATTGAATGT  895

seq1  CCTTTAGCTTTGGTGCCAAGTCCACTGGGGAGTTAACAGGCAAAGGCTGC  948
      || ||||||||| ||||||||| ||| ||||||||||| ||||| |||||
seq2  CC-TTAGCTTTGTTGCCAAGTCTACT-GGGAGTTAACA-GCAAA-GCTGC  941

seq1  TCTCTGTTTTGTTTTCGTGGAGTTTTCCAAAGATCCCTCAAACCTTTG  996
      || ||| ||||||||| ||||||||||| |||||||||||||||||||
seq2  TCCCTG-TTTGTTTTCTTGGAGTTTTCC-AAGATCCCTCAAACCTTTG  987