BAC Information

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BAC

Clone NameB6Ng01-107N06
Chromosome2 (Build37)2 (Build37)
Map Location 122,047,552 - 122,048,705122,300,826 - 122,301,547
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTrp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832
Downstream geneSord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107N06.bB6Ng01-107N06.g
ACCDH915178DH915179
length1,152724
definitionDH915178|Mus musculus domesticus DNA, BAC clone: B6Ng01-107N06, 5' end.DH915179|Mus musculus domesticus DNA, BAC clone: B6Ng01-107N06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(122,047,552 - 122,048,705)(122,300,826 - 122,301,547)
sequence
gaattcaatgccattctggacaacctatgatagttcaagggcatcctgag
atacaaaaggccacgtctcagaaggaggatgaagaggaggcttcagatga
aaggaatgtaaaagacacatctttgctatctttgcttccctgagaggtgt
tcttttatggtccctcctgctgactcacgctaggctgagggaggcctgac
tgtccctgctaggtagtgccactgctgctgattggtgtttgctctctcag
ctctaccaaactggactgctggtgtatccgtgaaatgtttttgagtggat
caagctgccgctgctaacctgtcaactgaactgacggtttccagacaaca
cagacaggagttgctccaaagaaccatttctaaacaggtccatttctcct
ccccctggtgggcagtgggttacaagggaggttaaaacatttaagaatca
tcattaaaaataaaggttgaaaaaaattaaagttacaaagttctgatatt
tttattgtatactgtaaagagctgggctttgcttatttgccttcgtattt
atttcgagctttgtttataggaaagttgcaagtgcggtgtaaagcacttt
atcttcagattcactgagcataacttatcaatgtgacgtcccaccaaaat
caggaagttaacaatcacttctgtatagtaactatctgtcaagcctcagg
tccacttctggttttaccggttggctgccttgaaggtatctgttccaacc
atgaaagctgtccatttgcaggcagcactgggtctacttgtaatgtttct
ttagcttcctccattttgaaacagagccccagcatttcctttacttatgt
gatattgacagatctaaagattatagaaaaaactgtgagatgttcctcaa
cttgggcatgtaagtgtttgttcatgcttgccttcgtttgtgtgctgggg
gccgagcatctgtggcgatttcttttcatcttcagaaacatcctaatctg
gtgcaaaggtttcaatttgatcacagaatattcagctttgcctcttatta
aggtactattatatcagaattctcatacaagggtgggtgttcttgatgaa
tggcctcatatatctgggtctccagcttggatgtctagagaggtgtgctt
gt
gaattctagcctccctggcatccctgaagtctcagctccatgagaccatg
ggtctgaacctggcttccctgaactggaaccgctcaggcagtcaactggg
acattgactgaaaggccttcttgtttaccttcttctagggagttccatct
tacactgcctgttgcccaatagctgaaaaacattgttttcaggaccatag
ctgggattggtcagctgcttaaggtaagaggatacagctggtctctgttt
ctctatcttggccaaaaataaaagtttataattatcaaaggcttactatt
gtgcttaacactgtcttagacattgaggatagacttgtgatcctcacagg
aaaaatatcctagttcccagtaagaggcctgtgaaaataagtaggggatc
cagtcaatactcaaagatcttaaatgctcttgggtacggaccttccatgt
ctgtggctgtaacctctaacaacagcagactgcacagagggcaggatggg
gctacaaagagatgaacaactaaattggtagagatatattaaattaaatg
ggtatttggctataactaaactgaatccagctgcctgagaggtaggaagg
gggagactcactagggtccagaaatttgaggtcaacctaggcaaactagt
gagtccctatcagaagaaaaacagactgaagaaacgagaggaggggagaa
tggaagagagaaggggaaggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_122047552_122048705
seq2: B6Ng01-107N06.b_49_1200

seq1  GAATTCAATGCCATTCTGGACAACCTATGATAGTTCAAGGGCATCCTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGCCATTCTGGACAACCTATGATAGTTCAAGGGCATCCTGAG  50

seq1  ATACAAAAGGCCACGTCTCAGAAGGAGGATGAAGAGGAGGCTTCAGATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAAGGCCACGTCTCAGAAGGAGGATGAAGAGGAGGCTTCAGATGA  100

seq1  AAGGAATGTAAAAGACACATCTTTGCTATCTTTGCTTCCCTGAGAGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATGTAAAAGACACATCTTTGCTATCTTTGCTTCCCTGAGAGGTGT  150

seq1  TCTTTTATGGTCCCTCCTGCTGACTCACGCTAGGCTGAGGGAGGCCTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATGGTCCCTCCTGCTGACTCACGCTAGGCTGAGGGAGGCCTGAC  200

seq1  TGTCCCTGCTAGGTAGTGCCACTGCTGCTGATTGGTGTTTGCTCTCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGCTAGGTAGTGCCACTGCTGCTGATTGGTGTTTGCTCTCTCAG  250

seq1  CTCTACCAAACTGGACTGCTGGTGTATCCGTGAAATGTTTTTGAGTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCAAACTGGACTGCTGGTGTATCCGTGAAATGTTTTTGAGTGGAT  300

seq1  CAAGCTGCCGCTGCTAACCTGTCAACTGAACTGACGGTTTCCAGACAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGCCGCTGCTAACCTGTCAACTGAACTGACGGTTTCCAGACAACA  350

seq1  CAGACAGGAGTTGCTCCAAAGAACCATTTCTAAACAGGTCCATTTCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGAGTTGCTCCAAAGAACCATTTCTAAACAGGTCCATTTCTCCT  400

seq1  CCCCCTGGTGGGCAGTGGGTTACAAGGGAGGTTAAAACATTTAAGAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGGTGGGCAGTGGGTTACAAGGGAGGTTAAAACATTTAAGAATCA  450

seq1  TCATTAAAAATAAAGGTTGAAAAAAATTAAAGTTACAAAGTTCTGATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAAAATAAAGGTTGAAAAAAATTAAAGTTACAAAGTTCTGATATT  500

seq1  TTTATTGTATACTGTAAAGAGCTGGGCTTTGCTTATTTGCCTTCGTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTATACTGTAAAGAGCTGGGCTTTGCTTATTTGCCTTCGTATTT  550

seq1  ATTTCGAGCTTTGTTTATAGGAAAGTTGCAAGTGCGGTGTAAAGCACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGAGCTTTGTTTATAGGAAAGTTGCAAGTGCGGTGTAAAGCACTTT  600

seq1  ATCTTCAGATTCACTGAGCATAACTTATCAATGTGACGTCCCACCAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGATTCACTGAGCATAACTTATCAATGTGACGTCCCACCAAAAT  650

seq1  CAGGAAGTTAACAATCACTTCTGTATAGTAACTATCTGTCAAGCCTCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTTAACAATCACTTCTGTATAGTAACTATCTGTCAAGCCTCAGG  700

seq1  TCCACTTCTGGTTTTACCGGTTGGCTGCCTTGAAGGTATCTGTTCCAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCTGGTTTTACCGGTTGGCTGCCTTGAAGGTATCTGTTCCAACC  750

seq1  ATGAAAGCTGTCCATTTGCAGGCAGCACTGGGTCTACTTGTAATGTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGCTGTCCATTTGCAGGCAGCACTGGGTCTACTTGTAATGTTTCT  800

seq1  TTAGCTTCCTCCATTTTGAAACAGAGCCCCAGCATTTCCTTAACTTATGT  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTAGCTTCCTCCATTTTGAAACAGAGCCCCAGCATTTCCTTTACTTATGT  850

seq1  GATATTGACAGATCTAAAGATTATAGAACAAAACTGTGAGATGTTCCTCA  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GATATTGACAGATCTAAAGATTATAGAA-AAAACTGTGAGATGTTCCTCA  899

seq1  ACTTGGGCATGTCAGGTGTTTGTTCATGCTTGCCTTCGTTTGTGTGCTGG  950
      |||||||||||| | |||||||||||||||||||||||||||||||||||
seq2  ACTTGGGCATGT-AAGTGTTTGTTCATGCTTGCCTTCGTTTGTGTGCTGG  948

seq1  GGGCCGGAGCATCTGTGGCGATTCTCTTTTCATC-TCAG-AACATCCTAA  998
      ||||| ||||||||||||||||| |||||||||| |||| ||||||||||
seq2  GGGCC-GAGCATCTGTGGCGATT-TCTTTTCATCTTCAGAAACATCCTAA  996

seq1  TCTGGTGCACA-GTTTCAATTTGATCACAG-ATA-TCAGCTTTGGCCTCT  1045
      ||||||||| | |||||||||||||||||| ||| |||||||| ||||| 
seq2  TCTGGTGCAAAGGTTTCAATTTGATCACAGAATATTCAGCTTT-GCCTC-  1044

seq1  TTATTAAGGTACCA-TATATCAGATTTCCTCATTACAAGTGT-GGTG-TC  1092
      |||||||||||| | ||||||||| || |||| |||||| || |||| ||
seq2  TTATTAAGGTACTATTATATCAGAATT-CTCA-TACAAGGGTGGGTGTTC  1092

seq1  TTGAATGAAATGCCCCTCATAATCCTGGGTCTCCAGC-TGGATGTCTAGA  1141
      ||| |||||  |  |||||||   ||||||||||||| ||||||||||||
seq2  TTG-ATGAATGG--CCTCATATATCTGGGTCTCCAGCTTGGATGTCTAGA  1139

seq1  GGTGTGGCCTTGT  1154
      |  |||  |||||
seq2  GAGGTGTGCTTGT  1152

seq1: chr2_122300826_122301547
seq2: B6Ng01-107N06.g_69_792

seq1  GAATTCTAGCCTCCCTGGCATCCCTGAAGTCTCAGCTCCATGAGACCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGCCTCCCTGGCATCCCTGAAGTCTCAGCTCCATGAGACCATG  50

seq1  GGTCTGAACCTGGCTTCCCTGAACTGAAACCACTCAGACAGTCAACTGGG  100
      |||||||||||||||||||||||||| |||| ||||| ||||||||||||
seq2  GGTCTGAACCTGGCTTCCCTGAACTGGAACCGCTCAGGCAGTCAACTGGG  100

seq1  ACATTGACTGAAAGGCCTTCTTGTTTACCTTCTTCTAGGGAGTTCCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGACTGAAAGGCCTTCTTGTTTACCTTCTTCTAGGGAGTTCCATCT  150

seq1  TACACTGCCTGTTGCCCAATAGCTGAAAAACATTGTTTTTAGGACCACAG  200
      ||||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  TACACTGCCTGTTGCCCAATAGCTGAAAAACATTGTTTTCAGGACCATAG  200

seq1  CTGTGATTGATCAGCTGCTTAAGGTAAGAGGATAAAGCTGGTCTCTGTTT  250
      ||| ||||| |||||||||||||||||||||||| |||||||||||||||
seq2  CTGGGATTGGTCAGCTGCTTAAGGTAAGAGGATACAGCTGGTCTCTGTTT  250

seq1  CTCTATCTTGGCCAAATATAAAAGTTTATAATTATCAAAGGCTTACTATT  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCTATCTTGGCCAAAAATAAAAGTTTATAATTATCAAAGGCTTACTATT  300

seq1  GTGCTTGACACTGTCTTAGACATTGAGGATAGACTTGTGATCCTCACAGG  350
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAACACTGTCTTAGACATTGAGGATAGACTTGTGATCCTCACAGG  350

seq1  AACAATATCCTAGTTCCCAGTAAGAGGCCTGTGAAAATAAGTAGGGGATC  400
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATCCTAGTTCCCAGTAAGAGGCCTGTGAAAATAAGTAGGGGATC  400

seq1  CAGTCAATACTCAAAGATC-TGAATGCTCTTGGGTACGGACCTTCCATGT  449
      ||||||||||||||||||| | ||||||||||||||||||||||||||||
seq2  CAGTCAATACTCAAAGATCTTAAATGCTCTTGGGTACGGACCTTCCATGT  450

seq1  CTGTGGCTGTAACCTCAAATGACAGCAGACTGCACACAGGGCAGGATGGG  499
      |||||||||||||||| ||  ||||||||||||||| |||||||||||||
seq2  CTGTGGCTGTAACCTCTAACAACAGCAGACTGCACAGAGGGCAGGATGGG  500

seq1  GCTACAAAGAGATGTATAACTAAATTGATAGAGATATATTAAATTAAATG  549
      |||||||||||||| | |||||||||| ||||||||||||||||||||||
seq2  GCTACAAAGAGATGAACAACTAAATTGGTAGAGATATATTAAATTAAATG  550

seq1  GGTATTTGGCTATAACTAAACTGGATCAGGTTGCCTGAGAGGT-GGGAGG  598
      ||||||||||||||||||||||| |||  | |||||||||||| || |||
seq2  GGTATTTGGCTATAACTAAACTGAATCCAGCTGCCTGAGAGGTAGGAAGG  600

seq1  GGAATTCTCACTAGGGTTCAGGAGTTTGAGGTCAACCTAGGCAAACTAGT  648
      || |  ||||||||||| ||| | ||||||||||||||||||||||||||
seq2  GGGAGACTCACTAGGGTCCAGAAATTTGAGGTCAACCTAGGCAAACTAGT  650

seq1  AAGTCTTTATCAGAAGAAAAACAGACTGAAGAAATGGGAGGAGGGGAGAG  698
       ||||  ||||||||||||||||||||||||||| | |||||||||||| 
seq2  GAGTCCCTATCAGAAGAAAAACAGACTGAAGAAACGAGAGGAGGGGAGAA  700

seq1  TGGAAGAGGGATGGGGAAGAAAGA  722
      |||||||| || ||||||| ||||
seq2  TGGAAGAGAGAAGGGGAAGGAAGA  724