BAC Information

Click to search

BAC

Clone NameB6Ng01-107P12
Chromosome2 (Build37)
Map Location 38,045,378 - 38,258,192
singlet/doubletdoublet
Overlap geneDennd1a, LOC100040947, Lhx2
Upstream geneOlfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491
Downstream geneNek6, Psmb7, LOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107P12.bB6Ng01-107P12.g
ACCDH915280DH915281
length640513
definitionDH915280|Mus musculus domesticus DNA, BAC clone: B6Ng01-107P12, 5' end.DH915281|Mus musculus domesticus DNA, BAC clone: B6Ng01-107P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,045,378 - 38,046,017)(38,257,674 - 38,258,192)
sequence
gaattcacacacaattattcataaatataaattacaggttttcaaaagtc
tatattacacagaaacacccacatgatgccctctttggcctctatcactc
ttatatttttctgtgtacctgccataaaatgaaaggatacttgttatctc
aaagcccaaactcagaaagagaaggctcaaatcagggtgcctaagaaaat
agattttcttatgacctttgggcaattcgattaaccatttaggtattagt
tgctttataaggaattgagataatattatctttctcatagaatgagtgtt
aattctagctagatttccattcccagtgaagagaaaccatgatttatatt
ggtattaacatttctaaaaatagaacaaatgaataaagaaaaaactgttc
aagaatagcaaagcatttttaagtgtaaaattctataaagccagaaaaga
atctaccaaaaaaggtaaaaaggacaaaactttatttaataaggtccaaa
atagaggaggtcccagtggtcaaagttttggtcgctcaaaattatgagag
agacaaaatggaaacacacaaacctcagagatggcttgtctataaattcc
tgagaagggagaggggagaaaggtagggagggtgaaggga
tttaaaaccagtcttacacctcagattccacatatttatttgtctaggat
ggaggaaaagaactcgggcgggggaagcaggccctggagtcacatcataa
gctagctgggtaaaaactgtgcccagtcccctttacaggagagaaaacag
aggctgagggaggctgttattaagtgtgtgtccccaaagtagagagctgt
caaaggcagaggggagattcgacagacgggtgtggttacatggcagcact
tgacaaccaggaatcatggtggccctacaaggcttccatcgctatgctgg
tgttctccttcctgtcagttataatctttgattcttttatcttaagatgg
agtcttgaatgtagtttgcccgaagctcactatgtgactcagactgaatt
tgaactcatgacagttttcctgcctcagcctcctgagttctggatcacag
gatcgagctaccacactggctaaatgatcccttttgaatggtgtgtgtgt
aggtgtgggtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_38045378_38046017
seq2: B6Ng01-107P12.b_43_682

seq1  GAATTCACACACAATTATTCATAAATATAAATTACAGGTTTTCAAAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACACAATTATTCATAAATATAAATTACAGGTTTTCAAAAGTC  50

seq1  TATATTACACAGAAACACCCACATGATGCCCTCTTTGGCCTCTATCACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTACACAGAAACACCCACATGATGCCCTCTTTGGCCTCTATCACTC  100

seq1  TTATATTTTTCTGTGTACCTGCCATAAAATGAAAGGATACTTGTTATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTTTCTGTGTACCTGCCATAAAATGAAAGGATACTTGTTATCTC  150

seq1  AAAGCCCAAACTCAGAAAGAGAAGGCTCAAATCAGGGTGCCTAAGAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCAAACTCAGAAAGAGAAGGCTCAAATCAGGGTGCCTAAGAAAAT  200

seq1  AGATTTTCTTATGACCTTTGGGCAATTCGATTAACCATTTAGGTATTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTCTTATGACCTTTGGGCAATTCGATTAACCATTTAGGTATTAGT  250

seq1  TGCTTTATAAGGAATTGAGATAATATTATCTTTCTCATAGAATGAGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATAAGGAATTGAGATAATATTATCTTTCTCATAGAATGAGTGTT  300

seq1  AATTCTAGCTAGATTTCCATTCCCAGTGAAGAGAAACCATGATTTATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGCTAGATTTCCATTCCCAGTGAAGAGAAACCATGATTTATATT  350

seq1  GGTATTAACATTTCTAAAAATAGAACAAATGAATAAAGAAAAAACTGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTAACATTTCTAAAAATAGAACAAATGAATAAAGAAAAAACTGTTC  400

seq1  AAGAATAGCAAAGCATTTTTAAGTGTAAAATTCTATAAAGCCAGAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAGCAAAGCATTTTTAAGTGTAAAATTCTATAAAGCCAGAAAAGA  450

seq1  ATCTACCAAAAAAGGTAAAAAGGACAAAACTTTATTTAATAAGGTCCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCAAAAAAGGTAAAAAGGACAAAACTTTATTTAATAAGGTCCAAA  500

seq1  ATAGAGGAGGTCCCAGTGGTCAAAGTTTTGGTCGCTCAAAATTATGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGAGGTCCCAGTGGTCAAAGTTTTGGTCGCTCAAAATTATGAGAG  550

seq1  AGACAAAATGGAAACACACAAACCTCAGAGATGGCTTGTCTATAAATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAATGGAAACACACAAACCTCAGAGATGGCTTGTCTATAAATTCC  600

seq1  TGAGAAGGGAGAGGGGAGAAAGGTAGGGAGGGTGAAGGGA  640
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGGGAGAGGGGAGAAAGGTAGGGAGGGTGAAGGGA  640

seq1: chr2_38257674_38258192
seq2: B6Ng01-107P12.g_71_589 (reverse)

seq1  CACACCCACACCTACACACACACCATTCAAAAGGGATCATTTAGCCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCACACCTACACACACACCATTCAAAAGGGATCATTTAGCCAGTG  50

seq1  TGGTAGCTCGATCCTGTGATCCAGAACTCAGGAGGCTGAGGCAGGAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCTCGATCCTGTGATCCAGAACTCAGGAGGCTGAGGCAGGAAAAC  100

seq1  TGTCATGAGTTCAAATTCAGTCTGAGTCACATAGTGAGCTTCGGGCAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGAGTTCAAATTCAGTCTGAGTCACATAGTGAGCTTCGGGCAAAC  150

seq1  TACATTCAAGACTCCATCTTAAGATAAAAGAATCAAAGATTATAACTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCAAGACTCCATCTTAAGATAAAAGAATCAAAGATTATAACTGAC  200

seq1  AGGAAGGAGAACACCAGCATAGCGATGGAAGCCTTGTAGGGCCACCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAGAACACCAGCATAGCGATGGAAGCCTTGTAGGGCCACCATGA  250

seq1  TTCCTGGTTGTCAAGTGCTGCCATGTAACCACACCCGTCTGTCGAATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGTTGTCAAGTGCTGCCATGTAACCACACCCGTCTGTCGAATCTC  300

seq1  CCCTCTGCCTTTGACAGCTCTCTACTTTGGGGACACACACTTAATAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGCCTTTGACAGCTCTCTACTTTGGGGACACACACTTAATAACAG  350

seq1  CCTCCCTCAGCCTCTGTTTTCTCTCCTGTAAAGGGGACTGGGCACAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCAGCCTCTGTTTTCTCTCCTGTAAAGGGGACTGGGCACAGTTT  400

seq1  TTACCCAGCTAGCTTATGATGTGACTCCAGGGCCTGCTTCCCCCGCCCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCAGCTAGCTTATGATGTGACTCCAGGGCCTGCTTCCCCCGCCCGA  450

seq1  GTTCTTTTCCTCCATCCTAGACAAATAAATATGTGGAATCTGAGGTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTCCTCCATCCTAGACAAATAAATATGTGGAATCTGAGGTGTAA  500

seq1  GACTGGTTTTAAAGAATTC  519
      |||||||||||||||||||
seq2  GACTGGTTTTAAAGAATTC  519