BAC Information

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BAC

Clone NameB6Ng01-108A01
Chromosome2 (Build37)
Map Location 59,167,019 - 59,347,297
singlet/doubletdoublet
Overlap genePkp4, LOC625354, 2310032F03Rik
Upstream geneAcvr1c, LOC667062, Acvr1, LOC674940, Upp2, BC062650
Downstream geneLOC100038999, LOC100039016, Tanc1, Wdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108A01.bB6Ng01-108A01.g
ACCDH915304DH915305
length1,090593
definitionDH915304|Mus musculus domesticus DNA, BAC clone: B6Ng01-108A01, 5' end.DH915305|Mus musculus domesticus DNA, BAC clone: B6Ng01-108A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,167,019 - 59,168,115)(59,346,705 - 59,347,297)
sequence
gaattctagagatcctgagtacttcaaattaaagaatttactagattttt
aaaaatatttgcactttactaaactatctcagatttggggcttttataat
actcagcctatatagtggttgagaggagatggtataagtttaaaaagtcg
aaggttttatggtttgtagatttaagactggcaggcagtagcaggtggcc
atactgtggcaaagtgtagtcaccatagcatcttgttaatactgttttcc
caaaagtcagagccacagagcaaagggaagaccttcagggacagccgcag
aagagaggcagacgaggctgtcgcaggttctgagtacctcagctgaaagc
tagctggagaataatagtgaggacattctcagagcaggctgtggtcctgg
attagagaccacacacccacccaccttcctagccgggtatcagcaccgtg
tgggtatacacaatgctgtacaccccatggtgtttgtactatatggtttc
cagtgtttttcagcaatgctttcaggatgggtgtgcgtgacagcgccatg
ttctcctaagtccatggatgcagtgttgtcagaatgagagcagggtctag
gctaagcagcagaagcatggccactatcttagggtccatattgctgcgaa
gagacaccatgacagcaaattttataacggaaagcatttaattggtgctg
gcttacagttcagaggtttaatccattgtcagtgtggtgagaagcatggc
agcaagcaggcagacaaggtgctggacaggcagctgacagattgacaggc
agcaaggagagagagacatggggcctggctcgagcatttgaacctcagca
gtcatccacagtgaaacacttccagcaaggccacaccttctaatagtgtc
gctccctttgagcctgtggatatcagtcctattaaaaccagcaaagcata
tccgctggctcagatattcttcagccccaggacaggaagatatttaccgt
catcctctgctctctgacgtcctcatacccagagctggggcgtctgttta
ccttgtgggcatctggagaagggagctgaccaaggacatc
gaattctcagcttcctccctcgcctttgttcttatgggatggaagaggcc
actgcagacttgaggctaaggcatgcccagagaaactcccccacctaacc
tcagagaccacttagccttccagaggcttatttttctctcaggccttggc
tatttctttgaaaattttctgctctttttctctcaacctctcatttccct
tggcttatgttctgtcatttcacgttttctaattaattattcatcactta
gctactctgtcatatttggatgccatcataacgtcctgacagttgatggc
aaacttgttggggctggcaagctatgttgggataaagcgactctctgaag
tacccaagaaatagctgatggctgatttggctcgagtcggggagatgaga
agaagaaggacaggaagactgtgggacagacagcacaaaaaactaggcat
ctagaatagggtggtagacaggggcagaaagcaatgaaaaaatttatcat
caatcagaggtgactactgggaattcccagccttcttgaggacattttga
gcttccactgcacatgtgatggatgtgtgtgtatgtgtatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_59167019_59168115
seq2: B6Ng01-108A01.b_45_1134

seq1  GAATTCTAGAGATCCTGAGTACTTCAAATTAAAGAATTTACTAGATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGATCCTGAGTACTTCAAATTAAAGAATTTACTAGATTTTT  50

seq1  AAAAATATTTGCACTTTACTAAACTATCTCAGATTTGGGGCTTTTATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTTGCACTTTACTAAACTATCTCAGATTTGGGGCTTTTATAAT  100

seq1  ACTCAGCCTATATAGTGGTTGAGAGGAGATGGTATAAGTTTAAAAAGTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCCTATATAGTGGTTGAGAGGAGATGGTATAAGTTTAAAAAGTCG  150

seq1  AAGGTTTTATGGTTTGTAGATTTAAGACTGGCAGGCAGTAGCAGGTGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTATGGTTTGTAGATTTAAGACTGGCAGGCAGTAGCAGGTGGCC  200

seq1  ATACTGTGGCAAAGTGTAGTCACCATAGCATCTTGTTAATACTGTTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTGGCAAAGTGTAGTCACCATAGCATCTTGTTAATACTGTTTTCC  250

seq1  CAAAAGTCAGAGCCACAGAGCAAAGGGAAGACCTTCAGGGACAGCCGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTCAGAGCCACAGAGCAAAGGGAAGACCTTCAGGGACAGCCGCAG  300

seq1  AAGAGAGGCAGACGAGGCTGTCGCAGGTTCTGAGTACCTCAGCTGAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGCAGACGAGGCTGTCGCAGGTTCTGAGTACCTCAGCTGAAAGC  350

seq1  TAGCTGGAGAATAATAGTGAGGACATTCTCAGAGCAGGCTGTGGTCCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGAGAATAATAGTGAGGACATTCTCAGAGCAGGCTGTGGTCCTGG  400

seq1  ATTAGAGACCACACACCCACCCACCTTCCTAGCCGGGTATCAGCACCGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGACCACACACCCACCCACCTTCCTAGCCGGGTATCAGCACCGTG  450

seq1  TGGGTATACACAATGCTGTACACCCCATGGTGTTTGTACTATATGGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATACACAATGCTGTACACCCCATGGTGTTTGTACTATATGGTTTC  500

seq1  CAGTGTTTTTCAGCAATGCTTTCAGGATGGGTGTGCGTGACAGCGCCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTTTCAGCAATGCTTTCAGGATGGGTGTGCGTGACAGCGCCATG  550

seq1  TTCTCCTAAGTCCATGGATGCAGTGTTGTCAGAATGAGAGCAGGGTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTAAGTCCATGGATGCAGTGTTGTCAGAATGAGAGCAGGGTCTAG  600

seq1  GCTAAGCAGCAGAAGCATGGCCACTATCTTAGGGTCCATATTGCTGCGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGCAGCAGAAGCATGGCCACTATCTTAGGGTCCATATTGCTGCGAA  650

seq1  GAGACACCATGACAGCAAATTTTATAACGGAAAGCATTTAATTGGTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACCATGACAGCAAATTTTATAACGGAAAGCATTTAATTGGTGCTG  700

seq1  GCTTACAGTTCAGAGGTTTAATCCATTGTCAGTGTGGTGAGAAGCATGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACAGTTCAGAGGTTTAATCCATTGTCAGTGTGGTGAGAAGCATGGC  750

seq1  AGCAAGCAGGCAGACAAGGTGCTGGACAGGCAGCTGACAGATTGACAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCAGGCAGACAAGGTGCTGGACAGGCAGCTGACAGATTGACAGGC  800

seq1  AGCAAGGAGAGAGAGACATGGGGCCTGGCTCGAGCATTTGAAACCTCAGC  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGCAAGGAGAGAGAGACATGGGGCCTGGCTCGAGCATTTG-AACCTCAGC  849

seq1  AGTCATCCACAGTGAAACACTTCCAGCAAGGCCACACCTTCTAATAGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCCACAGTGAAACACTTCCAGCAAGGCCACACCTTCTAATAGTGT  899

seq1  CGCTCCCTTTGAGCCTGTGGATATCAGTCCTATTAAAACCAGCAAAGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCCCTTTGAGCCTGTGGATATCAGTCCTATTAAAACCAGCAAAGCAT  949

seq1  ATCCGCTGGCTCAGGATATTC-TCAGCCCCAGGACAGGAAGATAATTTAC  999
      ||||||||||||| ||||||| ||||||||||||||||||||| ||||||
seq2  ATCCGCTGGCTCA-GATATTCTTCAGCCCCAGGACAGGAAGAT-ATTTAC  997

seq1  CGTCATCCTCTGCTCCTCTGACGTTCCTCATACCCCAGAGGCTGGGGCGG  1049
      |||||||||||||| |||||||| |||||||| |||||| ||||||||| 
seq2  CGTCATCCTCTGCT-CTCTGACG-TCCTCATA-CCCAGA-GCTGGGGCG-  1042

seq1  TTCTG-TTACCTTGTGGGCATCCTGAGAAAGGAGCTGACCAAGGACATC  1097
       |||| ||||||||||||||||  ||||| |||||||||||||||||||
seq2  -TCTGTTTACCTTGTGGGCATCTGGAGAAGGGAGCTGACCAAGGACATC  1090

seq1: chr2_59346705_59347297
seq2: B6Ng01-108A01.g_68_660 (reverse)

seq1  CACATACACATACACACACATCCATCACATGTGCAGTGGAAGCTCAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACATACACACACATCCATCACATGTGCAGTGGAAGCTCAAAAT  50

seq1  GTCCTCAAGAAGGCTGGGAATTCCCAGTAGTCACCTCTGATTGATGATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAAGAAGGCTGGGAATTCCCAGTAGTCACCTCTGATTGATGATAA  100

seq1  ATTTTTTCATTGCTTTCTGCCCCTGTCTACCACCCTATTCTAGATGCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCATTGCTTTCTGCCCCTGTCTACCACCCTATTCTAGATGCCTA  150

seq1  GTTTTTTGTGCTGTCTGTCCCACAGTCTTCCTGTCCTTCTTCTTCTCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTGCTGTCTGTCCCACAGTCTTCCTGTCCTTCTTCTTCTCATC  200

seq1  TCCCCGACTCGAGCCAAATCAGCCATCAGCTATTTCTTGGGTACTTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGACTCGAGCCAAATCAGCCATCAGCTATTTCTTGGGTACTTCAGA  250

seq1  GAGTCGCTTTATCCCAACATAGCTTGCCAGCCCCAACAAGTTTGCCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCGCTTTATCCCAACATAGCTTGCCAGCCCCAACAAGTTTGCCATCA  300

seq1  ACTGTCAGGACGTTATGATGGCATCCAAATATGACAGAGTAGCTAAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAGGACGTTATGATGGCATCCAAATATGACAGAGTAGCTAAGTGA  350

seq1  TGAATAATTAATTAGAAAACGTGAAATGACAGAACATAAGCCAAGGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAATTAATTAGAAAACGTGAAATGACAGAACATAAGCCAAGGGAAA  400

seq1  TGAGAGGTTGAGAGAAAAAGAGCAGAAAATTTTCAAAGAAATAGCCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGTTGAGAGAAAAAGAGCAGAAAATTTTCAAAGAAATAGCCAAGG  450

seq1  CCTGAGAGAAAAATAAGCCTCTGGAAGGCTAAGTGGTCTCTGAGGTTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGAAAAATAAGCCTCTGGAAGGCTAAGTGGTCTCTGAGGTTAGG  500

seq1  TGGGGGAGTTTCTCTGGGCATGCCTTAGCCTCAAGTCTGCAGTGGCCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGTTTCTCTGGGCATGCCTTAGCCTCAAGTCTGCAGTGGCCTCT  550

seq1  TCCATCCCATAAGAACAAAGGCGAGGGAGGAAGCTGAGAATTC  593
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCCATAAGAACAAAGGCGAGGGAGGAAGCTGAGAATTC  593