BAC Information

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BAC

Clone NameB6Ng01-108D23
Chromosome2 (Build37)
Map Location 129,137,497 - 129,138,629
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a
Downstream geneIl1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108D23.bB6Ng01-108D23.g
ACCDH915481DH915482
length1,1231,160
definitionDH915481|Mus musculus domesticus DNA, BAC clone: B6Ng01-108D23, 5' end.DH915482|Mus musculus domesticus DNA, BAC clone: B6Ng01-108D23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccccaaatgagagtttggttgagaaacagccaatttgggtctgtg
tatctctcaacctactctttcatatggccttcttggaaagtggtttcgag
gggaaaagatgatgcaggaggttcagagagggagagctgtagcatctaaa
ccaatccttttagggaagggagagaggacagcactgggcagggctttact
gggcctgatgtgtttggctcagtgcttcctaaataattcagaaataaata
ttgtattctgtaccataggctttgccaaacattaataattttcctttcag
aagccacaaaattaagcattttgcaagacaaaatgacatgtgttggtagg
tgagtggatttgctttgtaagccctgatgttatggctccaaaagatctgt
ctgtctgccttgttctttctctctctacttcccttcattccctccatctc
atccttctctcttctctttgtcttttgttctctttctttttttctttctt
tctttctttctttctttctttctttctttctttctttctttctttctttc
tttctttctttctttctttctttctttctttcttttttctttttttcggt
tttcgagacagggtttctctgtgtagccctggctgtcctggaactcactc
tgtagaccaggctggcttcgaactcagaaattcgactgcctctgcctccc
aagtgctgggattaaaggcgtgcgccaccactgcccagcatctgtctttt
gttcttgacagggtctcattgtgcgtctgaatctgctctcaaagactcct
cctgcttcagcctcctgggggctgggttatagacccagccatgcacggtc
acacttgccctaagaatctcagtgatgctttccatgtgacaatgccttaa
gttaacagtgtgctctcagtcagcctccagctgcacatactcatgtgcca
ttcctgtgttcctttgcagctgaagatctttgaagaaagaaatgacccag
tgaaggtcactgaaactaagactcagaccagcctgaacttgaacttcgaa
ttctgatgaattagatctcattttatgtctgattctacaatactttccta
ctggcactggcaagttttgctga
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctaagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagcattatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatatactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatta
aagggtggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgcccacagtcagctaatggatggatcacagggctccca
atggagagctagagaaagtacccaggagctaaagggatctgcacctatag
tggatcacatatgactaccagtacccggagctcttgactctagctgcata
tgtatcaagatggctagtcggcatcacttgaagaagcccattggaccaca
accttatatgctcagaacagtacgccaggccaaaatggcaattgtcgtca
gggaaatggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_129137497_129138629
seq2: B6Ng01-108D23.b_41_1163

seq1  GAATTCCCCAAATGAGAGTTTGGTTGAGAAACAGCCAATTTGGGTCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAAATGAGAGTTTGGTTGAGAAACAGCCAATTTGGGTCTGTG  50

seq1  TATCTCTCAACCTACTCTTTCATATGGCCTTCTTGGAAAGTGGTTTCGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTCAACCTACTCTTTCATATGGCCTTCTTGGAAAGTGGTTTCGAG  100

seq1  GGGAAAAGATGATGCAGGAGGTTCAGAGAGGGAGAGCTGTAGCATCTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAGATGATGCAGGAGGTTCAGAGAGGGAGAGCTGTAGCATCTAAA  150

seq1  CCAATCCTTTTAGGGAAGGGAGAGAGGACAGCACTGGGCAGGGCTTTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCTTTTAGGGAAGGGAGAGAGGACAGCACTGGGCAGGGCTTTACT  200

seq1  GGGCCTGATGTGTTTGGCTCAGTGCTTCCTAAATAATTCAGAAATAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGATGTGTTTGGCTCAGTGCTTCCTAAATAATTCAGAAATAAATA  250

seq1  TTGTATTCTGTACCATAGGCTTTGCCAAACATTAATAATTTTCCTTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTCTGTACCATAGGCTTTGCCAAACATTAATAATTTTCCTTTCAG  300

seq1  AAGCCACAAAATTAAGCATTTTGCAAGACAAAATGACATGTGTTGGTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACAAAATTAAGCATTTTGCAAGACAAAATGACATGTGTTGGTAGG  350

seq1  TGAGTGGATTTGCTTTGTAAGCCCTGATGTTATGGCTCCAAAAGATCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGATTTGCTTTGTAAGCCCTGATGTTATGGCTCCAAAAGATCTGT  400

seq1  CTGTCTGCCTTGTTCTTTCTCTCTCTACTTCCCTTCATTCCCTCCATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCCTTGTTCTTTCTCTCTCTACTTCCCTTCATTCCCTCCATCTC  450

seq1  ATCCTTCTCTCTTCTCTTTGTCTTTTGTTCTCTTTCTTTTTTTCTTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||    ||||||
seq2  ATCCTTCTCTCTTCTCTTTGTCTTTTGTTCTCTTTCTTTT----TTTCTT  496

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  546

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTCTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTCTTTTTTT  596

seq1  CGGTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTC  646

seq1  ACTCTGTAGACCAGGCTGGCTTCGAACTCAGAAATTCGACTGCCTCTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTAGACCAGGCTGGCTTCGAACTCAGAAATTCGACTGCCTCTGCC  696

seq1  TCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACTGCCCAGCATCTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACTGCCCAGCATCTGTC  746

seq1  TTTTGTTCTTGACAGGGTCTCATTGTGCGTCTGAATCTGCTCTCAAAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCTTGACAGGGTCTCATTGTGCGTCTGAATCTGCTCTCAAAGAC  796

seq1  TCCTCCTGCTTCAGCCTCCTGGGGGCTGGGTTATAGACCCAGCCATGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTGCTTCAGCCTCCTGGGGGCTGGGTTATAGACCCAGCCATGCAC  846

seq1  GGTCACACTTGCCCTAAGAATCTCAGTGATGCTTTCCATGTGACAATGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACACTTGCCCTAAGAATCTCAGTGATGCTTTCCATGTGACAATGCC  896

seq1  TTAAGGTTAACAGTGTGCTCTCAGTTCAGCCTCCAGCTGCACATACTCAT  950
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTAA-GTTAACAGTGTGCTCTCAG-TCAGCCTCCAGCTGCACATACTCAT  944

seq1  GTGCCATTCCTGTGTCCTTATGCAGCTGAAGACCTTGGAAGAAAGAAATG  1000
      ||||||||||||||| | | |||||||||||| ||| |||||||||||||
seq2  GTGCCATTCCTGTGTTCCTTTGCAGCTGAAGATCTTTGAAGAAAGAAATG  994

seq1  ACCAAGTGAAGGTCACAGAAACCAAGACTCAGACACAGCCTGAACTTGAA  1050
      ||| |||||||||||| ||||| ||||||||||| |||||||||||||||
seq2  ACCCAGTGAAGGTCACTGAAACTAAGACTCAGAC-CAGCCTGAACTTGAA  1043

seq1  ACTCAGATTCTGATGAAATTAGATCTCATTTATAGTCTGAATCCTAGAAT  1100
        ||  ||||||||| |||||||||||||||   ||||| || ||| |||
seq2  CTTCGAATTCTGATG-AATTAGATCTCATTTTATGTCTG-ATTCTACAAT  1091

seq1  ACTTTCTCACTGTCACTGGCAAGTCTTTGCTGA  1133
      ||||||  |||| ||||||||||| ||||||||
seq2  ACTTTCCTACTGGCACTGGCAAGT-TTTGCTGA  1123