BAC Information

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BAC

Clone NameB6Ng01-108I07
Chromosome2 (Build37)
Map Location 122,092,279 - 122,234,321
singlet/doubletdoublet
Overlap geneDuox2, Duoxa2, Duoxa1, Duox1, Shf
Upstream geneTrp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord
Downstream geneSlc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108I07.bB6Ng01-108I07.g
ACCDH915684DH915685
length1,1261,037
definitionDH915684|Mus musculus domesticus DNA, BAC clone: B6Ng01-108I07, 5' end.DH915685|Mus musculus domesticus DNA, BAC clone: B6Ng01-108I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,092,279 - 122,093,411)(122,233,693 - 122,234,321)
sequence
gaattcccctggagctccccagcgttgttggaaggcctggcggcctctgt
atactctcagcaggtagggcatactttcagtcaacatggaggaccgcgcc
cagttgacactgccagcactggagtgaagtaggtagggttaagggttgag
agctgagaagaggaccctgaaggtgacaaggaaggaggagaaaggcagcc
cttagagcccctgaagagactgatatgttggtcccagcaactccatcttt
ggccacagctgaatgtaaagctgcttctggacttttctttcctggctagc
tggctctttccagcctctcctgaggccaagtagcacagcctttcctgctg
ttttgcataaagcaggctggtagtgaagccagaggtcaaaagcagggaaa
catacaggatgtgtttgactgtttgccttttcctcaaaactgtccctgct
catgatgtcagcctaaagctcaaagttcagaaaccaagacagggaagcaa
tgctcagacagccagctaggacagaggctagatggtgagcccagtcaggt
ctacacccctggtggcagacagttcccctccgtgtgccaaattcaagagc
taagagaagactggtggggaagcttgctaagaacatggcagatgggatgt
gctttccagacaatggtggacgccatgttgatgttgcccagcccccacat
catctgggtccaaagcctctgcacctcaccctcagctttaaaagctctag
ctgagtcagacactggctcttctttccttggcatctgatagtgggcaaga
gcgtagttggcattaccagcatgggatttcttggtgcatcctccaacctg
aggagctgtttcttgcatccacatgggcctctgagaggcagtgtatcata
gcagattcattatagggtgactaggatgttcagattccaggctagcacca
gccactatgacaccaagtccctcacttcagtcaggcccatttcctcctct
gctatctaagggtcattctggacatctcagtctcttcattgcactgatat
actgcacttgggaagaagagacccatgggaatctatgcacgaattaactg
tgaaggggccttctggaccctttcaa
gaattctttgtctgggatttcatttaagtcattctccttggggccattac
tgcattttgtaactttgagagaagattttactgaaaatgtttccaatgcc
ttcgtcacggaatccttctcctttgtccatgcctgtaaataacagctaca
ggtttttttttttcatagtatccagagatctcacagcttcgattagtaat
tatttttttattaatttgtcgttgtccctgacaaagtgctccaattcctc
tgtgttgtcctcaatgcctgatagtctgtgttccttgtggttcactctac
ctctgaggctgtcccacgatctttttatctggtggagtgaatatttcact
tcagtttctatttagtatttctatctctttattgttacattttcacatcc
tgtattgacttccttatttaattcacttgtttttgttctcttgggaattc
attgaggagcttacttgtgtcccttcctttatttctttgaatgtatttat
aatcattctttacagttctttgtctggtttttcatttaaatcactgttat
tggtgccattactgcatcgtgtagctttcagagaagatacatcctcttgt
tttctcgggttacttatgtttttaaattggaatttacaaattgattggtt
tgggttttttttttaacttttaaatttttaattcacctttctttttttag
tggaggtgtttgcagtgccttggaagaactaggttttagtaagaccgggg
tgtcattcctctggtagatggttgttgggagcaccagcatctatccttta
tacttccctcagaggagcatgctactctgaaacaatactcactctccagg
gataaagctgtgaaaatggattgatagcaaattaaaaaatcaattagccc
ttaacaccaatcattttagggaataaagaagactgatatatcacgtgtga
tgatatactagttactgtgatacgagtggaaagaaaagaaaggtaaaaga
aactgattggctcctctgattatgtttgtttgatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_122092279_122093411
seq2: B6Ng01-108I07.b_49_1174

seq1  GAATTCCCCTGGAGCTCCCCAGCGTTGTTGGAAGGCCTGGCGGCCTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTGGAGCTCCCCAGCGTTGTTGGAAGGCCTGGCGGCCTCTGT  50

seq1  ATACTCTCAGCAGGTAGGGCATACTTTCAGTCAACATGGAGGACCGCGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTCAGCAGGTAGGGCATACTTTCAGTCAACATGGAGGACCGCGCC  100

seq1  CAGTTGACACTGCCAGCACTGGAGTGAAGTAGGTAGGGTTAAGGGTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGACACTGCCAGCACTGGAGTGAAGTAGGTAGGGTTAAGGGTTGAG  150

seq1  AGCTGAGAAGAGGACCCTGAAGGTGACAAGGAAGGAGGAGAAAGGCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGAAGAGGACCCTGAAGGTGACAAGGAAGGAGGAGAAAGGCAGCC  200

seq1  CTTAGAGCCCCTGAAGAGACTGATATGTTGGTCCCAGCAACTCCATCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGCCCCTGAAGAGACTGATATGTTGGTCCCAGCAACTCCATCTTT  250

seq1  GGCCACAGCTGAATGTAAAGCTGCTTCTGGACTTTTCTTTCCTGGCTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGCTGAATGTAAAGCTGCTTCTGGACTTTTCTTTCCTGGCTAGC  300

seq1  TGGCTCTTTCCAGCCTCTCCTGAGGCCAAGTAGCACAGCCTTTCCTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTTCCAGCCTCTCCTGAGGCCAAGTAGCACAGCCTTTCCTGCTG  350

seq1  TTTTGCATAAAGCAGGCTGGTAGTGAAGCCAGAGGTCAAAAGCAGGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCATAAAGCAGGCTGGTAGTGAAGCCAGAGGTCAAAAGCAGGGAAA  400

seq1  CATACAGGATGTGTTTGACTGTTTGCCTTTTCCTCAAAACTGTCCCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGGATGTGTTTGACTGTTTGCCTTTTCCTCAAAACTGTCCCTGCT  450

seq1  CATGATGTCAGCCTAAAGCTCAAAGTTCAGAAACCAAGACAGGGAAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGTCAGCCTAAAGCTCAAAGTTCAGAAACCAAGACAGGGAAGCAA  500

seq1  TGCTCAGACAGCCAGCTAGGACAGAGGCTAGATGGTGAGCCCAGTCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGACAGCCAGCTAGGACAGAGGCTAGATGGTGAGCCCAGTCAGGT  550

seq1  CTACACCCCTGGTGGCAGACAGTTCCCCTCCGTGTGCCAAATTCAAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACCCCTGGTGGCAGACAGTTCCCCTCCGTGTGCCAAATTCAAGAGC  600

seq1  TAAGAGAAGACTGGTGGGGAAGCTTGCTAAGAACATGGCAGATGGGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAAGACTGGTGGGGAAGCTTGCTAAGAACATGGCAGATGGGATGT  650

seq1  GCTTTCCAGACAATGGTGGACGCCATGTTGATGTTGCCCAGCCCCCACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCAGACAATGGTGGACGCCATGTTGATGTTGCCCAGCCCCCACAT  700

seq1  CATCTGGGTCCAAAGCCTCTGCACCTCACCCTCAGCTTTAAAAGCTCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGGTCCAAAGCCTCTGCACCTCACCCTCAGCTTTAAAAGCTCTAG  750

seq1  CTGAGTCAGACACTGGCTCTTCTTTCCTTGGCATCTGATAGTGGGCAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCAGACACTGGCTCTTCTTTCCTTGGCATCTGATAGTGGGCAAGA  800

seq1  GCGTAGTTGGCATTACCAGCATGGGATTTCTTGGTGCATCCTCCAACCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTAGTTGGCATTACCAGCATGGGATTTCTTGGTGCATCCTCCAACCTG  850

seq1  AGGAGCTGTTTCTTGCATCCACAT-GGCCTCTGAGAGGCAGTGTATCATA  899
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGGAGCTGTTTCTTGCATCCACATGGGCCTCTGAGAGGCAGTGTATCATA  900

seq1  GCAGATTCATTATAGGGGTGACTAGGATGTCCAGATTCCAGGCTAGCCAC  949
      |||||||||||||| ||||||||||||||| ||||||||||||||| |||
seq2  GCAGATTCATTATA-GGGTGACTAGGATGTTCAGATTCCAGGCTAG-CAC  948

seq1  CAGCCACTATGACACCAAGTCCCCTCCACTTCCAGTCAGGCCCCATTTCC  999
      |||||||||||||||||||||||   ||||| |||||||| |||||||||
seq2  CAGCCACTATGACACCAAGTCCC--TCACTT-CAGTCAGG-CCCATTTCC  994

seq1  TCCTCTGCTATCTAAAGGGTCATTCTGGACAATCTCCAGGTCTCCTCA-T  1048
      ||||||||||||| |||||||||||||||| |||||   ||||| ||| |
seq2  TCCTCTGCTATCT-AAGGGTCATTCTGGAC-ATCTC--AGTCTCTTCATT  1040

seq1  GCACTGATACACTGCACCTGGGAAGAA-AGACCCCATGGGAACTCTATGT  1097
      ||||||||| ||||||| ||||||||| ||| |||||||||| |||||| 
seq2  GCACTGATATACTGCACTTGGGAAGAAGAGA-CCCATGGGAA-TCTATG-  1087

seq1  CACG-ATTAACTGT-AAGGGGCCTTCT-GACCCCTTCAA  1133
      |||| ||||||||| |||||||||||| ||||| |||||
seq2  CACGAATTAACTGTGAAGGGGCCTTCTGGACCCTTTCAA  1126

seq1: chr2_122233693_122234321
seq2: B6Ng01-108I07.g_482_1104 (reverse)

seq1  CTCATCAACCCAACACTAATCATGAGAGCCAATCTGTTTCTTTTTCCTTT  50
      |||||||| | |||| ||||||   ||||||||| ||||||||| |||||
seq2  CTCATCAAACAAACA-TAATCAGAGGAGCCAATCAGTTTCTTTTACCTTT  49

seq1  CTTTTTCTTTCCACTCGTATTCACAGTAACTAGTATATCATCACACGTGA  100
      | ||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  C-TTTTCTTTCCACTCGTA-TCACAGTAACTAGTATATCATCACACGTGA  97

seq1  TATTATCAGTCTTCTTTTATTCCCTAAAATGATTGGTGTTTAAGGGCTAA  150
      || ||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  TA-TATCAGTCTTC-TTTATTCCCTAAAATGATTGGTG-TTAAGGGCTAA  144

seq1  TTGATTTTTTAATTTGCTATCAATCCATTTTCACAGCTTTATCCCTGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTTTAATTTGCTATCAATCCATTTTCACAGCTTTATCCCTGGAG  194

seq1  AGTGAGTATTGTTTCAGAGTAGCATGCTCCTCTGAGGGAAGTATTAAGGA  250
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGTGAGTATTGTTTCAGAGTAGCATGCTCCTCTGAGGGAAGTATAAAGGA  244

seq1  TAGATGCTGGTGCTCCCAACAACCATCTACCAGAGGAATGACACCCCGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCTGGTGCTCCCAACAACCATCTACCAGAGGAATGACACCCCGGT  294

seq1  CTTACTAAAACCTAGTTCTTCCAAGGCACTGCAAACACCTCCACTAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTAAAACCTAGTTCTTCCAAGGCACTGCAAACACCTCCACTAAAAA  344

seq1  AAGAAAGGTGAATTAAAAATTTAAAAGTTAAAAAAAAAACCCAAACCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGTGAATTAAAAATTTAAAAGTTAAAAAAAAAACCCAAACCAAT  394

seq1  CAATTTGTAAATTCCAATTTAAAAACATAAGTAACCCGAGAAAACAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGTAAATTCCAATTTAAAAACATAAGTAACCCGAGAAAACAAGAG  444

seq1  GATGTATCTTCTCTGAAAGCTACACGATGCAGTAATGGCACCAATAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATCTTCTCTGAAAGCTACACGATGCAGTAATGGCACCAATAACAG  494

seq1  TGATTTAAATGAAAAACCAGACAAAGAACTGTAAAGAATGATTATAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAAATGAAAAACCAGACAAAGAACTGTAAAGAATGATTATAAATA  544

seq1  CATTCAAAGAAATAAAGGAAGGGACACAAGTAAGCTCCTCAATGAATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAAGAAATAAAGGAAGGGACACAAGTAAGCTCCTCAATGAATTCC  594

seq1  CAAGAGAACAAAAACAAGTGAATTAAATA  629
      |||||||||||||||||||||||||||||
seq2  CAAGAGAACAAAAACAAGTGAATTAAATA  623