BAC Information

Click to search

BAC

Clone NameB6Ng01-109A06
Chromosome2 (Build37)
Map Location 130,445,741 - 130,503,946
singlet/doubletdoublet
Overlap geneUbox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa
Upstream geneSirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik
Downstream geneSlc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109A06.bB6Ng01-109A06.g
ACCDH916045DH916046
length1,0701,128
definitionDH916045|Mus musculus domesticus DNA, BAC clone: B6Ng01-109A06, 5' end.DH916046|Mus musculus domesticus DNA, BAC clone: B6Ng01-109A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,445,741 - 130,446,826)(130,502,798 - 130,503,946)
sequence
gaattccagtgtacacagagaaaccctgtctcaaaacaaaacaaaacaaa
acaaaacaaaaaagatgtatttatttaacacaagaaggcggcatcggatc
ctattacagatggttgtgagccaccatgtggtcggtgagaattgaactct
ggacctctggaagagcatccaacgctcttaaccgctgagccatctctcta
gcccctgaagtgtctttctaactccacgtatgaccttttcttcccagagt
ccataaagagtcatgattgcatgacagaccaaaaggctttgttttaccta
ccaagcttctttctctaggttatagggacggatgttccaatttcacagta
aatctttatacactgggatcctttttttgagacagtatctcagtatgtgg
ccctgatactcactaggtagactaagctgaactttgcatgaactcataga
gatccatctgcctccacctccctaatgctgggatgaaaggtgactaccat
gcctggtgctacacctggtgtttcacctggccagcttcaactgttcaggt
gatcacaaactacatcctggggcccaaactgcgccctgtaccaggttttt
taagtacattttatctagacaacatctaatatctgtgctggctttcccaa
cagaactgagtaactatttcagaaatgacatgcctgaaaaacagtgtttc
ttctctagctctttatagaaaaagttcacagtcccatgctacagaccact
agttagttgtgatgaaaactatcaatatgaaagagtgcatcaataaataa
caaaccctctgtttactgttaaacagactgcctctgtcgtcatttctgtt
tgtctgtattggcctttttcaggcaaagtttcataaaatccacaccggtc
ttgagctcatcatcttccgattcccaccccctaatgtagcatgtgctcca
gttcacagtcagtcattttaggtggctttgtttgtttgtttttgtcttct
tggttttcaggctttttgttgttgttgtttgtttgtcaggatctatgcct
ctctgctctgtgggcactag
gaattcaaggccagcctagtctatagagcaagttccaggcctgccagcac
tatacagggagactgttggaggagggggcggggcacacaaactcaaacat
gaaaatgtcacaaagatgacaaaccagtggcatgaaatgccaatttaaca
agtaaaagtctggcctggatcaggggtgaagttcagggtggagcactagg
ttagctgagatgagaccccagcagtagcagcacccctactatctcagaca
aaacaagacaaactaacctagagcatgggtggcctgcttctgaatcccag
gccctgggctgaggcaggggtacacaagttcaaagccagcctgggctgca
tggtgaatctgtgaccagcatgggcagcagcaagactgtttcaaaacaaa
aaccagccaaaacggtcgggaacatagctcaatggtagagggtgtgccta
ccatgtagagtatctggcttcatatcccagcacctggtaggtctggggga
ggagagaggacacaggacagtgacaagggaggttataaataatggagatt
aagcccataaataagtgccaagttacacagtgacaacaggaaatgatgct
ttcgctagtggaagctatgtgactgaagtccctgagccttacctacactt
gtcaacgttctcagcccgaggtcacaggacacccagactcccctcctgta
acagatgctataggcaaacagctatcacaaggacaatgctgctcatgagc
cactgtgaacaacgtgtctcaagcacaccaaagacaatgagcgagaacag
aacgaggacaggaagtcaaggccatgtggaggagtggaggagtcgggagc
tggttaagcagccacggctggaacagagatcagaagggaccgcactggct
gctcttgcagagagctaggtttgattttcagtacccgcagacagtttcca
aacctccctagtgtagttcagggatcaaagttcttctggcttcatgggca
caagttacacatgttgttgaacagatcaaatatcatatgcaaacataaaa
catattagtagttgacaaactctgaagtgttacgttaatggtggactgtt
aagggaaggagaagagatattcattggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_130445741_130446826
seq2: B6Ng01-109A06.b_47_1116

seq1  GAATTCCAGTGTACACAGAGAAACCCTGTCTCAAAACAAAACAAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGTACACAGAGAAACCCTGTCTCAAAACAAAACAAAACAAA  50

seq1  ACAAAACAAAAAAGATGTATTTATTTAACACAAGAAGGCGGCATCGGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAAAAAGATGTATTTATTTAACACAAGAAGGCGGCATCGGATC  100

seq1  CTATTACAGATGGTTGTGAGCCACCATGTGGTCGGTGAGAATTGAACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACAGATGGTTGTGAGCCACCATGTGGTCGGTGAGAATTGAACTCT  150

seq1  GGACCTCTGGAAGAGCATCCAACGCTCTTAACCGCTGAGCCATCTCTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCTGGAAGAGCATCCAACGCTCTTAACCGCTGAGCCATCTCTCTA  200

seq1  GCCCCTGAAGTGTCTTTCTAACTCCACGTATGACCTTTTCTTCCCAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGAAGTGTCTTTCTAACTCCACGTATGACCTTTTCTTCCCAGAGT  250

seq1  CCATAAAGAGTCATGATTGCATGACAGACCAAAAGGCTTTGTTTTACCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAGAGTCATGATTGCATGACAGACCAAAAGGCTTTGTTTTACCTA  300

seq1  CCAAGCTTCTTTCTCTAGGTTATAGGGACGGATGTTCCAATTTCACAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTTCTTTCTCTAGGTTATAGGGACGGATGTTCCAATTTCACAGTA  350

seq1  AATCTTTATACACTGGGATCCTTTTTTTGAGACAGTATCTCAGTATGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTATACACTGGGATCCTTTTTTTGAGACAGTATCTCAGTATGTGG  400

seq1  CCCTGATACTCACTAGGTAGACTAAGCTGAACTTTGCATGAACTCATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATACTCACTAGGTAGACTAAGCTGAACTTTGCATGAACTCATAGA  450

seq1  GATCCATCTGCCTCCACCTCCCTAATGCTGGGATGAAAGGTGACTACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATCTGCCTCCACCTCCCTAATGCTGGGATGAAAGGTGACTACCAT  500

seq1  GCCTGGTGCTACACCTGGTGTTTCACCTGGCCAGCTTCAACTGTTCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTGCTACACCTGGTGTTTCACCTGGCCAGCTTCAACTGTTCAGGT  550

seq1  GATCACAAACTACATCCTGGGGCCCAAACTGCGCCCTGTACCAGGTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACAAACTACATCCTGGGGCCCAAACTGCGCCCTGTACCAGGTTTTT  600

seq1  TAAGTACATTTTATCTAGACAACATCTAATATCTGTGCTGGCTTTCCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACATTTTATCTAGACAACATCTAATATCTGTGCTGGCTTTCCCAA  650

seq1  CAGAACTGAGTAACTATTTCAGAAATGACATGCCTGAAAAACAGTGTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGAGTAACTATTTCAGAAATGACATGCCTGAAAAACAGTGTTTC  700

seq1  TTCTCTAGCTCTTTATAGAAAAAGTTCACAGTCCCATGCTACAGACCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGCTCTTTATAGAAAAAGTTCACAGTCCCATGCTACAGACCACT  750

seq1  AGTTAGTTGTGATGAAAACTATCAATATGAAAGAGTGCATCAATAAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTTGTGATGAAAACTATCAATATGAAAGAGTGCATCAATAAATAA  800

seq1  CAAACCCTCTGTTTACTGTTAAACAGACTGCCTCTGTCGTCATTTCTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCTCTGTTTACTGTTAAACAGACTGCCTCTGTCGTCATTTCTGTT  850

seq1  TGTCTGTATTGGCCTTTTTCAGGCAAAGTTTCATAAAATCCACACCGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTATTGGCCTTTTTCAGGCAAAGTTTCATAAAATCCACACCGGTC  900

seq1  TTGAGCTCATCATCTTCCGATTCCCACCCCCTAATGTAGGCATGTGCTCC  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGAGCTCATCATCTTCCGATTCCCACCCCCTAATGTA-GCATGTGCTCC  949

seq1  AGTTCACAGTCAGTCATTTTTAGGTGGCTTTGTTTGTTTGTTTTTGTCTT  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTTCACAGTCAGTCA-TTTTAGGTGGCTTTGTTTGTTTGTTTTTGTCTT  998

seq1  CTTGGTTTTTCAGGGCTTTTTTGTTTGTTTGTTTGTTTGTTTGTTCAAGG  1050
      ||||| |||||| ||||||||   |||||   ||||||||||| |||   
seq2  CTTGG-TTTTCA-GGCTTTTT--GTTGTT--GTTGTTTGTTTG-TCA---  1038

seq1  GAATCTATGCC-CTCTTCTGGCTTCTGTGGGCACTAG  1086
      | ||||||||| |||| |     ||||||||||||||
seq2  GGATCTATGCCTCTCTGC-----TCTGTGGGCACTAG  1070

seq1: chr2_130502798_130503946
seq2: B6Ng01-109A06.g_68_1195 (reverse)

seq1  CCCAATGAATAAATCTCTT-TCCTTCCTCACCTAACAGT-CACCATTTTA  48
      ||||||||||  ||||||| |||||||   | ||||||| ||||| || |
seq2  CCCAATGAAT--ATCTCTTCTCCTTCC---CTTAACAGTCCACCA-TTAA  44

seq1  CGTAACACTTCTAAGAGTTTGTCTACTTTACTATTATTGGTTTTTATGTT  98
      |||||||||||  |||||||||| ||  ||||| |||    ||||||| |
seq2  CGTAACACTTC--AGAGTTTGTCAAC--TACTAATAT---GTTTTATG-T  86

seq1  TTGCATATGGATATTTTGATCTGTTC-ACCACATGTGTAACTTGGTGCCC  147
      |||||||| |||| |||||||||||| || ||||||||||||| ||||||
seq2  TTGCATAT-GATA-TTTGATCTGTTCAACAACATGTGTAACTT-GTGCCC  133

seq1  ATGGAAGCCAGGAAGAACTTTGATTCCCTGGAACTACACTTAGGGAGGTT  197
      || ||||||| |||||||||||| ||||| ||||||||| ||||||||||
seq2  AT-GAAGCCA-GAAGAACTTTGA-TCCCT-GAACTACAC-TAGGGAGGTT  178

seq1  TGGAAACTGTCCTGCGGGTACTGAAAATCAAACCTAGGCTCTCTGCAAGA  247
      |||||||||| ||||||||||||||||||||||||| |||||||||||||
seq2  TGGAAACTGT-CTGCGGGTACTGAAAATCAAACCTA-GCTCTCTGCAAGA  226

seq1  GCAGCCAGTGCGGTCCCTTCTGATCTCTGTTCCAGCCGTGGCTGCTTAAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAGTGCGGTCCCTTCTGATCTCTGTTCCAGCCGTGGCTGCTTAAC  276

seq1  CAGCTCCCGACTCCTCCACTCCTCCACATGGCCTTGACTTCCTGTCCTCG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCCGACTCCTCCACTCCTCCACATGGCCTTGACTTCCTGTCCTCG  326

seq1  TTCTGTTCTCGCTCATTGTCTTTGGTGTGCTTGAGACACGTTGTTCACAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCTCGCTCATTGTCTTTGGTGTGCTTGAGACACGTTGTTCACAG  376

seq1  TGGCTCATGAGCAGCATTGTCCTTGTGATAGCTGTTTGCCTATAGCATCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCATGAGCAGCATTGTCCTTGTGATAGCTGTTTGCCTATAGCATCT  426

seq1  GTTACAGGAGGGGAGTCTGGGTGTCCTGTGACCTCGGGCTGAGAACGTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGGAGGGGAGTCTGGGTGTCCTGTGACCTCGGGCTGAGAACGTTG  476

seq1  ACAAGTGTAGGTAAGGCTCAGGGACTTCAGTCACATAGCTTCCACTAGCG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGTAGGTAAGGCTCAGGGACTTCAGTCACATAGCTTCCACTAGCG  526

seq1  AAAGCATCATTTCCTGTTGTCACTGTGTAACTTGGCACTTATTTATGGGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATCATTTCCTGTTGTCACTGTGTAACTTGGCACTTATTTATGGGC  576

seq1  TTAATCTCCATTATTTATAACCTCCCTTGTCACTGTCCTGTGTCCTCTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTCCATTATTTATAACCTCCCTTGTCACTGTCCTGTGTCCTCTCT  626

seq1  CCTCCCCCAGACCTACCAGGTGCTGGGATATGAAGCCAGATACTCTACAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCAGACCTACCAGGTGCTGGGATATGAAGCCAGATACTCTACAT  676

seq1  GGTAGGCACACCCTCTACCATTGAGCTATGTTCCCGACCGTTTTGGCTGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGCACACCCTCTACCATTGAGCTATGTTCCCGACCGTTTTGGCTGG  726

seq1  TTTTTGTTTTGAAACAGTCTTGCTGCTGCCCATGCTGGTCACAGATTCAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTGAAACAGTCTTGCTGCTGCCCATGCTGGTCACAGATTCAC  776

seq1  CATGCAGCCCAGGCTGGCTTTGAACTTGTGTACCCCTGCCTCAGCCCAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGCCCAGGCTGGCTTTGAACTTGTGTACCCCTGCCTCAGCCCAGG  826

seq1  GCCTGGGATTCAGAAGCAGGCCACCCATGCTCTAGGTTAGTTTGTCTTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGATTCAGAAGCAGGCCACCCATGCTCTAGGTTAGTTTGTCTTGT  876

seq1  TTTGTCTGAGATAGTAGGGGTGCTGCTACTGCTGGGGTCTCATCTCAGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGAGATAGTAGGGGTGCTGCTACTGCTGGGGTCTCATCTCAGCT  926

seq1  AACCTAGTGCTCCACCCTGAACTTCACCCCTGATCCAGGCCAGACTTTTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGTGCTCCACCCTGAACTTCACCCCTGATCCAGGCCAGACTTTTA  976

seq1  CTTGTTAAATTGGCATTTCATGCCACTGGTTTGTCATCTTTGTGACATTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTAAATTGGCATTTCATGCCACTGGTTTGTCATCTTTGTGACATTT  1026

seq1  TCATGTTTGAGTTTGTGTGCCCCGCCCCCTCCTCCAACAGTCTCCCTGTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTGAGTTTGTGTGCCCCGCCCCCTCCTCCAACAGTCTCCCTGTA  1076

seq1  TAGTGCTGGCAGGCCTGGAACTTGCTCTATAGACTAGGCTGGCCTTGAAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTGGCAGGCCTGGAACTTGCTCTATAGACTAGGCTGGCCTTGAAT  1126

seq1  TC  1149
      ||
seq2  TC  1128