BAC Information

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BAC

Clone NameB6Ng01-109B08
Chromosome2 (Build37)1 (Build37)
Map Location 106,650,686 - 106,651,81898,856,960 - 98,857,024
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneElp4, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5, 9330126M15
Downstream geneC130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109B08.bB6Ng01-109B08.g
ACCDH916090DH916091
length1,122155
definitionDH916090|Mus musculus domesticus DNA, BAC clone: B6Ng01-109B08, 5' end.DH916091|Mus musculus domesticus DNA, BAC clone: B6Ng01-109B08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(106,650,686 - 106,651,818)(98,856,960 - 98,857,024)
sequence
gaattccacctggacgctcacttctccacagccctggcatttcctgcaga
aagctctcacctctgtcttgaggctgtagacagccttcatccccatccag
cctgctgaggcgctctccttgctccctgtcccaacatccatcaagctttt
tgccttgagagaaagcaaaacctagacaaggaaaaggtagcagcgtttct
agaaacttctgtttaaaccattgtgtgtaaacactcccgaggcagatgaa
cacaaaggctttcctagaataaaggattgggagaaaacacaggctggtgt
tcctagtaactgttttttgcaatgtgtaaagtaaaaatgttgaagcttat
acatgtacccaaagtatatgccatactgttatgcacactctcagtgttgc
tgtgctcaaatgtgcagagtattaaacatggcagtccaacccagtttgtt
cagaattacagactctaaatgtcttgcttgtttgggttttaatgaccata
tttttcaaatactttttatccagaaacacattaggtgtttggggctgaaa
ccatgcttggtttcagattttgaaaaagcctttcaaaggggagaagaatg
tcttgagatatttgccttcggacactatcaccctgaaactgaacctgata
agttgttaagtctataatcttatacaattataagtcataagagtaagctg
atgaaaaacgggcattacgccataacatagaatatacctagagtattcct
gagaatattcctagaatattctctgagtttgatcagagacttttctgata
agcacaatagctcagcaggtctctgtctggtggcagaaaataaacacttg
aaatgccaaccatttgttcgattgactggtgctctaagcttcaaaatggt
ttctttaaatccagtacattaagaaactaaaggatgctggagaaatggct
ccacagataaagcatgcactggctgctcttcagagtcctgagtcagcttc
agcaacagagtgctcacacactgcatgggatctgatgccctcttctggtg
tgtctgaagacagtacagtgtcttatacataaaataagtgaaaaatataa
aaagaagaaaggagaggagagg

aagggcggggaggcaggagtgggtagatggataggaaaacaccctcatag
aagcaggggcaagtgggatgaggcaaggggtttggggggaaggggataac
atttgaaatgtgaataaagaaaatatccaataaaaattattttaaaaaga
aaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_106650686_106651818
seq2: B6Ng01-109B08.b_48_1169

seq1  GAATTCCACCTGGACGCTCACTTCTCCACAGCCCTGGCATTTCCTGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCTGGACGCTCACTTCTCCACAGCCCTGGCATTTCCTGCAGA  50

seq1  AAGCTCTCACCTCTGTCTTGAGGCTGTAGACAGCCTTCATCCCCATCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTCACCTCTGTCTTGAGGCTGTAGACAGCCTTCATCCCCATCCAG  100

seq1  CCTGCTGAGGCGCTCTCCTTGCTCCCTGTCCCAACATCCATCAAGCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGAGGCGCTCTCCTTGCTCCCTGTCCCAACATCCATCAAGCTTTT  150

seq1  TGCCTTGAGAGAAAGCAAAACCTAGACAAGGAAAAGGTAGCAGCGTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGAGAGAAAGCAAAACCTAGACAAGGAAAAGGTAGCAGCGTTTCT  200

seq1  AGAAACTTCTGTTTAAACCATTGTGTGTAAACACTCCCGAGGCAGATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTCTGTTTAAACCATTGTGTGTAAACACTCCCGAGGCAGATGAA  250

seq1  CACAAAGGCTTTCCTAGAATAAAGGATTGGGAGAAAACACAGGCTGGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGGCTTTCCTAGAATAAAGGATTGGGAGAAAACACAGGCTGGTGT  300

seq1  TCCTAGTAACTGTTTTTTGCAATGTGTAAAGTAAAAATGTTGAAGCTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTAACTGTTTTTTGCAATGTGTAAAGTAAAAATGTTGAAGCTTAT  350

seq1  ACATGTACCCAAAGTATATGCCATACTGTTATGCACACTCTCAGTGTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTACCCAAAGTATATGCCATACTGTTATGCACACTCTCAGTGTTGC  400

seq1  TGTGCTCAAATGTGCAGAGTATTAAACATGGCAGTCCAACCCAGTTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCAAATGTGCAGAGTATTAAACATGGCAGTCCAACCCAGTTTGTT  450

seq1  CAGAATTACAGACTCTAAATGTCTTGCTTGTTTGGGTTTTAATGACCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTACAGACTCTAAATGTCTTGCTTGTTTGGGTTTTAATGACCATA  500

seq1  TTTTTCAAATACTTTTTATCCAGAAACACATTAGGTGTTTGGGGCTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAATACTTTTTATCCAGAAACACATTAGGTGTTTGGGGCTGAAA  550

seq1  CCATGCTTGGTTTCAGATTTTGAAAAAGCCTTTCAAAGGGGAGAAGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTTGGTTTCAGATTTTGAAAAAGCCTTTCAAAGGGGAGAAGAATG  600

seq1  TCTTGAGATATTTGCCTTCGGACACTATCACCCTGAAACTGAACCTGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGATATTTGCCTTCGGACACTATCACCCTGAAACTGAACCTGATA  650

seq1  AGTTGTTAAGTCTATAATCTTATACAATTATAAGTCATAAGAGTAAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTAAGTCTATAATCTTATACAATTATAAGTCATAAGAGTAAGCTG  700

seq1  ATGAAAAACGGGCATTACGCCATAACATAGAATATACCTAGAGTATTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAACGGGCATTACGCCATAACATAGAATATACCTAGAGTATTCCT  750

seq1  GAGAATATTCCTAGAATATTCTCTGAGTTTGATCAGAGACTTTTCTGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATTCCTAGAATATTCTCTGAGTTTGATCAGAGACTTTTCTGATA  800

seq1  AGCACAATAGCTCAGCAGGTCTCTGTCTGGTGGCAGAAAATAAACACTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAATAGCTCAGCAGGTCTCTGTCTGGTGGCAGAAAATAAACACTTG  850

seq1  AAATGCCAACCATTTGTTCGATTGACTGGTGCTCTAAGCTTCAAAATGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAACCATTTGTTCGATTGACTGGTGCTCTAAGCTTCAAAATGGT  900

seq1  TTCTTTAAATCCAGTACATTAAGAAACTAAAGGAAGGCTGGAGAAATGGC  950
      ||||||||||||||||||||||||||||||||| | ||||||||||||||
seq2  TTCTTTAAATCCAGTACATTAAGAAACTAAAGG-ATGCTGGAGAAATGGC  949

seq1  TCCACAGATAAAAGCATGCACTGGCTGCTCTTCCAGAGGTCCTGAGTTCA  1000
      ||||||||| |||||||||||||||||||||| |||| |||||||| |||
seq2  TCCACAGAT-AAAGCATGCACTGGCTGCTCTT-CAGA-GTCCTGAG-TCA  995

seq1  GCTTCCAGCAACCAGAGTGGCTCACAACCAACTGCAATGGGATCTGATGC  1050
      |||| |||||| |||||| |||||||    ||||| ||||||||||||||
seq2  GCTT-CAGCAA-CAGAGT-GCTCACA---CACTGC-ATGGGATCTGATGC  1038

seq1  CCTCTTCTGGTGTGTCTGAAGACAGGTACAGTGTACTTATACATAAAATA  1100
      |||||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  CCTCTTCTGGTGTGTCTGAAGACA-GTACAGTGT-CTTATACATAAAATA  1086

seq1  AGTGAATAAATATAAAAAGAGGAGAG----GGAGAGG  1133
      |||||| ||||||||||||| || ||    |||||||
seq2  AGTGAA-AAATATAAAAAGAAGAAAGGAGAGGAGAGG  1122


seq1: chr1_98856960_98857024
seq2: B6Ng01-109B08.g_166_228

seq1  GGGATAGCATTTGAAATGTAAATGAAGAAAATATCTAATATAAAAATTAT  50
      |||||| |||||||||||| ||| ||||||||||| |  |||||||||||
seq2  GGGATAACATTTGAAATGTGAATAAAGAAAATATCCA--ATAAAAATTAT  48

seq1  TTTAAAAAGAAAAAT  65
      |||||||||||||||
seq2  TTTAAAAAGAAAAAT  63


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