BAC Information

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BAC

Clone NameB6Ng01-109E08
Chromosome2 (Build37)
Map Location 109,908,715 - 110,020,111
singlet/doubletdoublet
Overlap genenone
Upstream geneMett5d1, Kif18a, Bdnf, LOC100043427, Lin7c, Lgr4, Ccdc34
Downstream geneLOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15, LOC668802, LOC623270
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109E08.bB6Ng01-109E08.g
ACCDH916223DH916224
length1,104555
definitionDH916223|Mus musculus domesticus DNA, BAC clone: B6Ng01-109E08, 5' end.DH916224|Mus musculus domesticus DNA, BAC clone: B6Ng01-109E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,908,715 - 109,909,831)(110,019,551 - 110,020,111)
sequence
gaattcttcatacggcacaagatccacagtgcttatctgccagcctcaac
atcaatatttttaaattatgccaagcacatatctccagatggccgttaag
taatggtttatagtttggaggagtgggtgtcatcatgaggtcatggactg
gaaacccgtttgatctgtgggtcccatagaacatcttcttatcacgccca
cctctccctcattgcatagactagtaccgtgttctataaacactaataac
aagagcttttattacttgtaattagtacatctccttgctgtgctctaggt
accagattctaaccaaagccttggcagccttctttttttctaaccaatca
acaggcaagaagcccaagatcaggaagtctcctcagacaagctatggagt
gtctgctctgaatataacctccacttatctaagggaaaaagtccaaggaa
cttgctcatcttttcctctcatctctcctctgttccatttttctgtgctg
agaacagcttccccctggcttctgcatgcatcagactagcaagtatctgt
tatttaattataaagatttattatggaaccagaggaagaatagtaacaaa
tcccatctgggttaattaaaaagaactgtgtttctgaatactatgttgtt
tctctctttctggaggggaacagacccagaaacattttgatgcatggagc
atggcatggtttaatgggagccaggaactaaaacaattctatgttgtttc
tgaggaagcatgctggtctgttgcctttagtgaatgagaaatgaagtttc
tctacagtattagccactggcaggtgggtctatactatgcctagattctg
ccctactgctcccccccccccccaaaatgaacattcccgtgtataaagga
caaacattcccttttggagaaaaagaataaaagcaccagaaagcttcaat
catgataaacacatcaatttgcaaagtttagtttctcagagtggccacac
acagaggaagaacatctggtggatatgctgtccagcaaaggagagcatgc
ttggcacaagcaaggaatggttctttaaactgaaggagaaagtagtttac
tgga
tcctgacagctgccctgcttcactgctcggccttgcccaccactcctaat
tgaacaaaggagagcctctgctttcctctcgggagaaataattacgaagc
agaatgatgcaatctgtgactctcaatggcacaggccacagagccaggcc
aggctgggatcctaaaatcatgccaggaatgcaagccaggacccttctat
cccatgaatccaagcaacctctccaccaggctgcagctcaggctcctcag
tcatgcggatctaggtcactagttctgacactgaggtgcaaaactagccg
gaagcagggactgagttcttaagaatggcttctaacaaaatgacttagtt
gaggagtaggtgtttgtggagagataaatagcattctttaagagtttatg
gggggcgcactgtcagaggtgaaagggagagtggaaggggaaggactctg
cgagggggactaggagggagggcagcatttggggtgtaaataaataaaat
aaacaatgaaaaagactattgtgtgaacatgtgtgtgtgtgtgtgtgtgt
gtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_109908715_109909831
seq2: B6Ng01-109E08.b_48_1151

seq1  GAATTCTTCATACGGCACAAGATCCACAGTGCTTATCTGCCAGCCTCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATACGGCACAAGATCCACAGTGCTTATCTGCCAGCCTCAAC  50

seq1  ATCAATATTTTTAAATTATGCCAAGCACATATCTCCAGATGGCCGTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATATTTTTAAATTATGCCAAGCACATATCTCCAGATGGCCGTTAAG  100

seq1  TAATGGTTTATAGTTTGGAGGAGTGGGTGTCATCATGAGGTCATGGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTTTATAGTTTGGAGGAGTGGGTGTCATCATGAGGTCATGGACTG  150

seq1  GAAACCCGTTTGATCTGTGGGTCCCATAGAACATCTTCTTATCACGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCGTTTGATCTGTGGGTCCCATAGAACATCTTCTTATCACGCCCA  200

seq1  CCTCTCCCTCATTGCATAGACTAGTACCGTGTTCTATAAACACTAATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCTCATTGCATAGACTAGTACCGTGTTCTATAAACACTAATAAC  250

seq1  AAGAGCTTTTATTACTTGTAATTAGTACATCTCCTTGCTGTGCTCTAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTTTTATTACTTGTAATTAGTACATCTCCTTGCTGTGCTCTAGGT  300

seq1  ACCAGATTCTAACCAAAGCCTTGGCAGCCTTCTTTTTTTCTAACCAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATTCTAACCAAAGCCTTGGCAGCCTTCTTTTTTTCTAACCAATCA  350

seq1  ACAGGCAAGAAGCCCAAGATCAGGAAGTCTCCTCAGACAAGCTATGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAAGAAGCCCAAGATCAGGAAGTCTCCTCAGACAAGCTATGGAGT  400

seq1  GTCTGCTCTGAATATAACCTCCACTTATCTAAGGGAAAAAGTCCAAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTCTGAATATAACCTCCACTTATCTAAGGGAAAAAGTCCAAGGAA  450

seq1  CTTGCTCATCTTTTCCTCTCATCTCTCCTCTGTTCCATTTTTCTGTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCATCTTTTCCTCTCATCTCTCCTCTGTTCCATTTTTCTGTGCTG  500

seq1  AGAACAGCTTCCCCCTGGCTTCTGCATGCATCAGACTAGCAAGTATCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGCTTCCCCCTGGCTTCTGCATGCATCAGACTAGCAAGTATCTGT  550

seq1  TATTTAATTATAAAGATTTATTATGGAACCAGAGGAAGAATAGTAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATTATAAAGATTTATTATGGAACCAGAGGAAGAATAGTAACAAA  600

seq1  TCCCATCTGGGTTAATTAAAAAGAACTGTGTTTCTGAATACTATGTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCTGGGTTAATTAAAAAGAACTGTGTTTCTGAATACTATGTTGTT  650

seq1  TCTCTCTTTCTGGAGGGGAACAGACCCAGAAACATTTTGATGCATGGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTTCTGGAGGGGAACAGACCCAGAAACATTTTGATGCATGGAGC  700

seq1  ATGGCATGGTTTAATGGGAGCCAGGAACTAAAACAATTCTATGTTGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATGGTTTAATGGGAGCCAGGAACTAAAACAATTCTATGTTGTTTC  750

seq1  TGAGGAAGCATGCTGGTCTGTTGCCTTTAGTGAATGAGAAATGAAGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAGCATGCTGGTCTGTTGCCTTTAGTGAATGAGAAATGAAGTTTC  800

seq1  TCTACAGTATTAGCCACTGGCAGGTGGGTCTATACTATGCCTAGATTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGTATTAGCCACTGGCAGGTGGGTCTATACTATGCCTAGATTCTG  850

seq1  CCCTACTGCTCCCCCCCCCCCCCAAAATGAACATTCCCGTGTATAAAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTGCTCCCCCCCCCCCCCAAAATGAACATTCCCGTGTATAAAGGA  900

seq1  CAAACATTCCCTTTTGGAGAAAAAAGAATAAAAGGCACCAGAAAGCTTCA  950
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  CAAACATTCCCTTTTGGAG-AAAAAGAATAAAA-GCACCAGAAAGCTTCA  948

seq1  ATCATGATAAACACATCAATTTGCAAAAGTTTAGTTTCCCAGAGTGGCCA  1000
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  ATCATGATAAACACATCAATTTGC-AAAGTTTAGTTTCTCAGAGTGGCCA  997

seq1  CACACAGAGGAAAGAACATCTGGTGGATATGCTGTCCCAGCAAAGGAGAG  1050
      |||||||||| |||||||||||||||||||||||| ||||||||||||||
seq2  CACACAGAGG-AAGAACATCTGGTGGATATGCTGT-CCAGCAAAGGAGAG  1045

seq1  CAATGCTTGGGCACAAGGCAAAAGGAAATGGTCCTTAGACTGGAAGGAGA  1100
      | |||||| ||||||||    ||||||  | || ||| ||| ||||||||
seq2  C-ATGCTT-GGCACAAG---CAAGGAATGGTTCTTTAAACT-GAAGGAGA  1089

seq1  CAAGTAGTTATACTGGA  1117
       |||||||| |||||||
seq2  -AAGTAGTT-TACTGGA  1104

seq1: chr2_110019551_110020111
seq2: B6Ng01-109E08.g_67_627 (reverse)

seq1  CACACACACACACACACACACACACATGTTCACACAATAGTCTTTTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACATGTTCACACAATAGTCTTTTTCAT  50

seq1  TGTTTATTTTATTTATTTACACCCCAAATGCTGCCCTCCCTCCTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTTTATTTATTTACACCCCAAATGCTGCCCTCCCTCCTAGTCCC  100

seq1  CCTCGCAGAGTCCTTCCCCTTCCACTCTCCCTTTCACCTCTGACAGTGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGCAGAGTCCTTCCCCTTCCACTCTCCCTTTCACCTCTGACAGTGCG  150

seq1  CCCCCCATAAACTCTTAAAGAATGCTATTTATCTCTCCACAAACACCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCATAAACTCTTAAAGAATGCTATTTATCTCTCCACAAACACCTAC  200

seq1  TCCTCAACTAAGTCATTTTGTTAGAAGCCATTCTTAAGAACTCAGTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAACTAAGTCATTTTGTTAGAAGCCATTCTTAAGAACTCAGTCCCT  250

seq1  GCTTCCGGCTAGTTTTGCACCTCAGTGTCAGAACTAGTGACCTAGATCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCGGCTAGTTTTGCACCTCAGTGTCAGAACTAGTGACCTAGATCCG  300

seq1  CATGACTGAGGAGCCTGAGCTGCAGCCTGGTGGAGAGGTTGCTTGGATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTGAGGAGCCTGAGCTGCAGCCTGGTGGAGAGGTTGCTTGGATTC  350

seq1  ATGGGATAGAAGGGTCCTGGCTTGCATTCCTGGCATGATTTTAGGATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATAGAAGGGTCCTGGCTTGCATTCCTGGCATGATTTTAGGATCCC  400

seq1  AGCCTGGCCTGGCTCTGTGGCCTGTGCCATTGAGAGTCACAGATTGCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGCCTGGCTCTGTGGCCTGTGCCATTGAGAGTCACAGATTGCATC  450

seq1  ATTCTGCTTCGTAATTATTTCTCCCGAGAGGAAAGCAGAGGCTCTCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCTTCGTAATTATTTCTCCCGAGAGGAAAGCAGAGGCTCTCCTTT  500

seq1  GTTCAATTAGGAGTGGTGGGCAAGGCCGAGCAGTGAAGCAGGGCAGCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATTAGGAGTGGTGGGCAAGGCCGAGCAGTGAAGCAGGGCAGCTGT  550

seq1  CAGGAGAATTC  561
      |||||||||||
seq2  CAGGAGAATTC  561