BAC Information

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BAC

Clone NameB6Ng01-109J11
Chromosome2 (Build37)15 (Build37)
Map Location 142,776,586 - 142,777,69869,943,580 - 69,944,730
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109J11.bB6Ng01-109J11.g
ACCDH916461DH916462
length9851,132
definitionDH916461|Mus musculus domesticus DNA, BAC clone: B6Ng01-109J11, 5' end.DH916462|Mus musculus domesticus DNA, BAC clone: B6Ng01-109J11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,586 - 142,777,698)(69,943,580 - 69,944,730)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttaccgcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagggacttgaagtttttatcata
cagatctttcacttccttcgttagagtcacgccgagatatttatattatt
tgtggctattgagaaggtgttgtttccctaatttc
gaattcactctgcctatcccttcctgctgagtgcttagattaaaggcatg
catcaccatttcctggcttaaatatatagctcagtctggccttgattttg
tgattctcctgtttctgcctccttcagtaaattcctcaagttggggagac
acttgtgtaatataaatatcgtggaaataaactctattttgtacatttat
tatatatagtatctattggaaattctaatgttaaatatttctttaaaata
tcctcacagatttataactgagttttaaaatgtttgtgatcaaaagaaaa
actttacaacctgaattgagtacgtcgttatattacaaattaattccaaa
atagacatttcaaattaacaaaaatctcaacaacaataacaacatactaa
taattcaccctgatagcactctgatttattaaagcacggctcattgtaaa
cctctgacttacatgatggtctggcaaaatatgggctgctttagatcact
aagttttaaactgatctttcctacagaacaacagaaacaaatgcaaaaca
tttgccaattattgactatcatgtgccaggcatcactaatataaaagatt
ctcatctacagagatcatttagcttctaagtgcttcgtctctttcatgtg
atatttcagagagaaactaaagtgtaaataagagataatattcagagaca
tggtgtgaatttgcttctttttagacgttctaagtacttcttcccagttt
aaatgtattccacataaattatgttatataggtcagcaatgaaatgtaat
cacccacatttaatttgtatccatgatttcagtttaatcaattgaaaaag
gcataatattacttgtggatttatggctaatattatacagctagtatgaa
acagagcgataaatttccagaaaggagtgattgtcgacaagccactaaat
tgagataaacatctgcaaattagagtgtggttctatgttagtacattaca
acaaaatgagctgctaatgcctacattttctttaactaatagtagtcaag
ttgtctgtacatgactttgaaaggaaaatgagaaattctcatgtttataa
tcctggctgtttttgtctcagttcaactgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776586_142777698
seq2: B6Ng01-109J11.b_50_702 (reverse)

seq1  ATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTAC  50

seq1  AGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGT  100

seq1  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  150
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  150

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGAC  200
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  GTCACTTGATCTTCGACAAGGGAGCCAAAACCATCCAGTGGAAGAAAGAC  200

seq1  AGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  250

seq1  AATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  300

seq1  GGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  350

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAA  400
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAA  400

seq1  CAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACC  450
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAGAACAGCAATGGCTTGTGCGGTAAGATCGAGAATTGACAAATGGGACC  450

seq1  TAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  500
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  TAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACA  500

seq1  AAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  550
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGA  550

seq1  TAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCA  600
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCA  600

seq1  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTG  650
      ||||||||||||||||| ||||||||||||||||| ||            
seq2  GAAAATCAAATAACCCCCTTAAAAAATGGGGCTCAGAA----------CT  640

seq1  GAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTAT  700
      ||| |||||    |||                                  
seq2  GAACAAAGA----ATTC---------------------------------  653

seq1  CATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTC  750
                                                        
seq2  --------------------------------------------------  653

seq1  AAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACT  800
                                                        
seq2  --------------------------------------------------  653

seq1  TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAA  850
                                                        
seq2  --------------------------------------------------  653

seq1  AATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGAC  900
                                                        
seq2  --------------------------------------------------  653

seq1  AAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGT  950
                                                        
seq2  --------------------------------------------------  653

seq1  CTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATC  1000
                                                        
seq2  --------------------------------------------------  653

seq1  CTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAG  1050
                                                        
seq2  --------------------------------------------------  653

seq1  GTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACT  1100
                                                        
seq2  --------------------------------------------------  653

seq1  GAACAAAGAATTC  1113
                   
seq2  -------------  653

seq1: chr15_69943580_69944730
seq2: B6Ng01-109J11.g_68_1199

seq1  GAATTCACTCTGCCTATCCCTTCCTGCTGAGTGCTTAGATTAAAGGCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGCCTATCCCTTCCTGCTGAGTGCTTAGATTAAAGGCATG  50

seq1  CATCACCATTTCCTGGCTTAAATATATAGCTCAGTCTGGCCTTGATTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCATTTCCTGGCTTAAATATATAGCTCAGTCTGGCCTTGATTTTG  100

seq1  TGATTCTCCTGTTTCTGCCTCCTTCAGTAAATTCCTCAAGTTGGGGAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTCCTGTTTCTGCCTCCTTCAGTAAATTCCTCAAGTTGGGGAGAC  150

seq1  ACTTGTGTAATATAAATATCGTGGAAATAAACTCTATTTTGTACATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGTAATATAAATATCGTGGAAATAAACTCTATTTTGTACATTTAT  200

seq1  TATATATAGTATCTATTGGAAATTCTAATGTTAAATATTTCTTTAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAGTATCTATTGGAAATTCTAATGTTAAATATTTCTTTAAAATA  250

seq1  TCCTCACAGATTTATAACTGAGTTTTAAAATGTTTGTGATCAAAAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACAGATTTATAACTGAGTTTTAAAATGTTTGTGATCAAAAGAAAA  300

seq1  ACTTTACAACCTGAATTGAGTACGTCGTTATATTACAAATTAATTCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACAACCTGAATTGAGTACGTCGTTATATTACAAATTAATTCCAAA  350

seq1  ATAGACATTTCAAATTAACAAAAATCTCAACAACAATAACAACATACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACATTTCAAATTAACAAAAATCTCAACAACAATAACAACATACTAA  400

seq1  TAATTCACCCTGATAGCACTCTGATTTATTAAAGCACGGCTCATTGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCACCCTGATAGCACTCTGATTTATTAAAGCACGGCTCATTGTAAA  450

seq1  CCTCTGACTTACATGATGGTCTGGCAAAATATGGGCTGCTTTAGATCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGACTTACATGATGGTCTGGCAAAATATGGGCTGCTTTAGATCACT  500

seq1  AAGTTTTAAACTGATCTTTCCTACAGAACAACAGAAACAAATGCAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTAAACTGATCTTTCCTACAGAACAACAGAAACAAATGCAAAACA  550

seq1  TTTGCCAATTATTGACTATCATGTGCCAGGCATCACTAATATAAAAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAATTATTGACTATCATGTGCCAGGCATCACTAATATAAAAGATT  600

seq1  CTCATCTACAGAGATCATTTAGCTTCTAAGTGCTTCGTCTCTTTCATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTACAGAGATCATTTAGCTTCTAAGTGCTTCGTCTCTTTCATGTG  650

seq1  ATATTTCAGAGAGAAACTAAAGTGTAAATAAGAGATAATATTCAGAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAGAGAGAAACTAAAGTGTAAATAAGAGATAATATTCAGAGACA  700

seq1  TGGTGTGAATTTGCTTCTTTTTAGACGTTCTAAGTACTTCTTCCCAGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGAATTTGCTTCTTTTTAGACGTTCTAAGTACTTCTTCCCAGTTT  750

seq1  AAATGTATTCCACATAAATTATGTTATATAGGTCAGCAATGAAATGTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATTCCACATAAATTATGTTATATAGGTCAGCAATGAAATGTAAT  800

seq1  CACCCACATTTAATTTGTATCCATGATTTCAGTTTAATCAATTGAAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACATTTAATTTGTATCCATGATTTCAGTTTAATCAATTGAAAAAG  850

seq1  GCATAATATTACTTGTGGATTTATGGCTAATATTATACAGCTAGTATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATATTACTTGTGGATTTATGGCTAATATTATACAGCTAGTATGAA  900

seq1  ACAGAGCGATAAATTTCCAGAAAGGAGGTGATTGTCGACAAGCCACTAAA  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACAGAGCGATAAATTTCCAGAAAGGA-GTGATTGTCGACAAGCCACTAAA  949

seq1  TTGAGATAAACATCCTGCAAATTAGAGTGTGGTTCTATGTTAAGTAACCA  1000
      ||||||||||||| ||||||||||||||||||||||||||| ||||  ||
seq2  TTGAGATAAACAT-CTGCAAATTAGAGTGTGGTTCTATGTT-AGTA--CA  995

seq1  ATTTTACAACCAAAATGAGCTGCTAATGCCTACATTTTTCTTTAAACTAA  1050
         |||||| |||||||||||||||||||||||| |||||||| ||||||
seq2  ---TTACAA-CAAAATGAGCTGCTAATGCCTACA-TTTTCTTT-AACTAA  1039

seq1  TAGGTAGTCAAGTCTGTCTGTACATTGACTTTGAAAGGGAATATTGAGAA  1100
      || |||||||||| |||||||||| |||||||||||||  | | ||||||
seq2  TA-GTAGTCAAGT-TGTCTGTACA-TGACTTTGAAAGG--AAAATGAGAA  1084

seq1  --TCTCATGTTTAATAAATACTGGGCTGTTTTTGTCTCAGGTCCCAACTG  1148
        |||||||||||   ||| || ||||||||||||||||| |  ||||||
seq2  ATTCTCATGTTTA--TAATCCT-GGCTGTTTTTGTCTCAGTT--CAACTG  1129

seq1  CAA  1151
      |||
seq2  CAA  1132