BAC Information

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BAC

Clone NameB6Ng01-109K06
Chromosome2 (Build37)
Map Location 154,257,279 - 154,258,456
singlet/doubletsinglet
Overlap genenone
Upstream gene8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1
Downstream geneCbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109K06.bB6Ng01-109K06.g
ACCDH916496DH916497
length1,154840
definitionDH916496|Mus musculus domesticus DNA, BAC clone: B6Ng01-109K06, 5' end.DH916497|Mus musculus domesticus DNA, BAC clone: B6Ng01-109K06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatagcaatcctcctgtttccgtttcctgaagtattacaggtgtg
ttccgctgcactcagttccttcaaacttgaccaagcctgtctatgtaaca
gagaaatatttgccatgagtcagactttgtcaaggaaaaaaaaacttcct
ccaaaagagaaggtgcctaaaaaggtctcggtggaagacatgaacagtcg
aggtgtttgaacactagctggattattagaattcatactgtttatgagtt
ccatctgaatgagcatgtttatgatgaaaattaacagaatacaaaaacat
tgtgttgggtatgcctataaatccagtacccaggagatagagaccaggag
catcaagaattctgagcaagtttgaaaaatgaggaaggaacataatgagt
tcctgcctcaaaataaacaagtaaaataaaatccaaattaaatactcaag
aaaattatgaaaaaaataaagcaccgtaatttttttttaagaacttgttg
ttgagacaggttcactatataactaaggctggcctcagactcatttcctt
cagtctagttttaagtctccaccttggcctcttgcgtgctggtctcgcaa
agctgcaataccacaagtgaactagagagctgggtgtccttgctctggct
accacttaatttgatgatagacgttatcagagaaagcaggaccacaaagt
tatcaaacacaccagaccaaggaatgctacagctccttcacctggaccat
acagtaaaaggggctcctaacgttagctgagacatcctcacccatcatca
agatacccacaagcactaagttcctaactctgtctccagagccccaagag
ttttggcttacatggatggcttgaggaagacagccatctttcctggggac
ctagaaggctagaatttaccacccaccaccatgttcatcgtacctttctt
ttttttttttttttggttttcgagacagtaatttctctgtatagtcctgg
ctgtcctggagctacttggtagaccaggcttgtcctcgaactcagaatcg
ctgctctgcctccggaggtcctggattacgcctgtgccactgccggcagt
accttccttgaaacaacttctaatagctgtctggccagaagtactatgat
ccag
gaattcctgggcaggatcaggtgtgaggagagccaggaaagaagcccaga
gggccaggagaatgaatagaaacctgcagctgttagggtggtggagaagc
aggagactctaggaagtcccagagacctgggatgggggaggctcccagta
gtcaatgtgggtgaccttagccgagatgcctaacagtgggccatgaatcc
tgaaaagaccaccttctgtagccagggaggacccacccctcaccccccgc
aagtggagagataaggacactaaccaacccacaaaactttcgacacaaaa
tttgtcctgtctaaaagaaataaaggaacaaagatggagcagaggttgaa
ggaatgaccaacacaaaactagcccaacttgagacccatcccatgggcaa
gcaccaaccccagacactattaacaatatcctgttatgcttgcagacagg
agcctagcataactgtccactgagagagtccacctagcaactgactgaaa
caaatacagataagcaaagacagacattggacagaggtcagaaactctta
tggaagagttgggggaaggattgaaggctctgaaggaagaccaacagtgt
ccactaacctggatccttggggctctcagagactgaaccaccaactaaag
agcatacatgggctggaccgaggtcccctgaacatatgtagcagaagtgc
agctagtctccatggctgccttgtctggcccgagggggcatgaatacacc
tagtcccccagagacttgatgttccaggatagggggatatctagaggggc
ccacagtttcagaggagaagggaaggtgggattgagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_154257279_154258456
seq2: B6Ng01-109K06.b_47_1200 (reverse)

seq1  CTGGATCATATAGTTACTACCTGGCCAGACAGGGCTATATAGGAAGGTTT  50
      ||||||||||    ||||  |||||||||||  ||||| || ||||   |
seq2  CTGGATCATA---GTACT-TCTGGCCAGACA--GCTAT-TA-GAAG---T  39

seq1  TGTTTTAAAGAAAGGTAACTGCCGGGCACGGTGGCACAGGCCTTTAATCC  100
      || ||| ||| ||||| ||||||||   | |||||||||||   ||||||
seq2  TG-TTTCAAGGAAGGT-ACTGCCGG---CAGTGGCACAGGC--GTAATCC  82

seq1  CAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGG-CCAGCC  149
        |  ||| ||||||||| ||| |||   |||||||||||||| | ||||
seq2  AGGACCTCCGGAGGCAGA-GCA-GCG--ATTCTGAGTTCGAGGACAAGCC  128

seq1  TGGTCTACAAAGTGAGCTCCAGGACAGCCAGGACTATACAGAGAAA-TAC  198
      |||||||| |||| |||||||||||||||||||||||||||||||| |||
seq2  TGGTCTACCAAGT-AGCTCCAGGACAGCCAGGACTATACAGAGAAATTAC  177

seq1  TGTCTCGAAAAACCAAAAAAAAAAAAAAAAGAAAGGTAACGATGAACATG  248
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTCTCG-AAAACCAAAAAAAAAAAAAAAAGAAAGGT-ACGATGAACATG  225

seq1  GTGGTGGGTGGTAAATTCTAGGCCTTCTAGGTCCCCAGGAAAGATGGCTG  298
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTGGTGGGTGGTAAATTCTA-GCCTTCTAGGTCCCCAGGAAAGATGGCTG  274

seq1  TCTTCCTCAAGCCATCCATGTAAGCCAAAACTCTTGGGGCTCTGGAGACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCAAGCCATCCATGTAAGCCAAAACTCTTGGGGCTCTGGAGACA  324

seq1  GAGTTAGGAACTTAGTGCTTGTGGGTATCTTGATGATGGGTGAGGATGTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGGAACTTAGTGCTTGTGGGTATCTTGATGATGGGTGAGGATGTC  374

seq1  TCAGCTAACGTTAGGAGCCCCTTTTACTGTATGGTCCAGGTGAAGGAGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTAACGTTAGGAGCCCCTTTTACTGTATGGTCCAGGTGAAGGAGCT  424

seq1  GTAGCATTCCTTGGTCTGGTGTGTTTGATAACTTTGTGGTCCTGCTTTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATTCCTTGGTCTGGTGTGTTTGATAACTTTGTGGTCCTGCTTTCT  474

seq1  CTGATAACGTCTATCATCAAATTAAGTGGTAGCCAGAGCAAGGACACCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAACGTCTATCATCAAATTAAGTGGTAGCCAGAGCAAGGACACCCA  524

seq1  GCTCTCTAGTTCACTTGTGGTATTGCAGCTTTGCGAGACCAGCACGCAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTAGTTCACTTGTGGTATTGCAGCTTTGCGAGACCAGCACGCAAG  574

seq1  AGGCCAAGGTGGAGACTTAAAACTAGACTGAAGGAAATGAGTCTGAGGCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAGGTGGAGACTTAAAACTAGACTGAAGGAAATGAGTCTGAGGCC  624

seq1  AGCCTTAGTTATATAGTGAACCTGTCTCAACAACAAGTTCTTAAAAAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTAGTTATATAGTGAACCTGTCTCAACAACAAGTTCTTAAAAAAAA  674

seq1  ATTACGGTGCTTTATTTTTTTCATAATTTTCTTGAGTATTTAATTTGGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACGGTGCTTTATTTTTTTCATAATTTTCTTGAGTATTTAATTTGGAT  724

seq1  TTTATTTTACTTGTTTATTTTGAGGCAGGAACTCATTATGTTCCTTCCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTACTTGTTTATTTTGAGGCAGGAACTCATTATGTTCCTTCCTC  774

seq1  ATTTTTCAAACTTGCTCAGAATTCTTGATGCTCCTGGTCTCTATCTCCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAAACTTGCTCAGAATTCTTGATGCTCCTGGTCTCTATCTCCTG  824

seq1  GGTACTGGATTTATAGGCATACCCAACACAATGTTTTTGTATTCTGTTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGGATTTATAGGCATACCCAACACAATGTTTTTGTATTCTGTTAA  874

seq1  TTTTCATCATAAACATGCTCATTCAGATGGAACTCATAAACAGTATGAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATCATAAACATGCTCATTCAGATGGAACTCATAAACAGTATGAAT  924

seq1  TCTAATAATCCAGCTAGTGTTCAAACACCTCGACTGTTCATGTCTTCCAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAATCCAGCTAGTGTTCAAACACCTCGACTGTTCATGTCTTCCAC  974

seq1  CGAGACCTTTTTAGGCACCTTCTCTTTTGGAGGAAGTTTTTTTTTCCTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACCTTTTTAGGCACCTTCTCTTTTGGAGGAAGTTTTTTTTTCCTTG  1024

seq1  ACAAAGTCTGACTCATGGCAAATATTTCTCTGTTACATAGACAGGCTTGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTCTGACTCATGGCAAATATTTCTCTGTTACATAGACAGGCTTGG  1074

seq1  TCAAGTTTGAAGGAACTGAGTGCAGCGGAACACACCTGTAATACTTCAGG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTGAAGGAACTGAGTGCAGCGGAACACACCTGTAATACTTCAGG  1124

seq1  AAACTGAAACAGGAGGATTGCTATGAATTC  1178
      |||| |||||||||||||||||||||||||
seq2  AAACGGAAACAGGAGGATTGCTATGAATTC  1154