BAC Information

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BAC

Clone NameB6Ng01-109O01
Chromosome2 (Build37)
Map Location 54,916,386 - 55,064,255
singlet/doubletdoublet
Overlap geneGalnt13
Upstream geneRprm, LOC666913, LOC626563, LOC100041792, LOC100042878
Downstream geneLOC666936, Kcnj3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109O01.bB6Ng01-109O01.g
ACCDH916663DH916664
length1,1541,055
definitionDH916663|Mus musculus domesticus DNA, BAC clone: B6Ng01-109O01, 5' end.DH916664|Mus musculus domesticus DNA, BAC clone: B6Ng01-109O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,063,092 - 55,064,255)(54,916,386 - 54,917,405)
sequence
gaattcattagttttgtttcctctagattttattgtgacatagcttgtca
cgaaaacgaaaccttataaaggtcaaccctattaaaaagtagtctttgga
gattccctcattcttttgtgtgatataccctaactttgagttgttaattg
gaacccatcttcaacctgaggcagagttgtactgagaaggctcggctgat
tccataacaggctttaagttggcagttaaggagactaggccgaatctctg
ttcccaagaactgggtaattccagggaagtctaatctcagaagaggccac
cacctggcctgaggcaaggacaatgggtctgaaacactttccagacttcc
tcagctaattcttcagcaacagtttccagtcctccccagaaagtttccag
cccccacacccaggtaatggaatgttcatagagatggacccaacagatta
acatagagatcacctacctgggaattctctaatgtgctttagatcaggcc
tgcaaactcacttaagtggctgtctattctggtaatggggaatggcccca
gcatgctggacttctgcagaataaagcacgctttgcatttacatactatt
tgagcctggggtatcattcttcaaagaatcatggacccttacggtagtac
atgcagacaaacttgtctgcacaggttgacagattgactttcttcattag
gccaagtgctcattccaccattgaaatggaaaacagcaaggcgttggact
tcactgacctaggaatgagcagaaacagtcccttattaattttctgttag
tgtttaacattccattgggctcactcaagtgcctgacttaatcatgatat
tgtctcttattactagatctcatcaccctggaaactttgctttctaagtc
agagtactaagttgttctgagcaagttcaccttttgtctggcaaggatca
cagatcctctctcactggggttaattcatttagcagccatgatctcagtg
tttaacaaatataagagcagcactgcttgtgcattggattctgcatagat
cccagtggagcagatatcaagaagtcttcttcggaagaggcacagaaatg
atggactctttgagaaacataacccaaaacaggctacctacctccccaca
atgc
gaattctttgtttagctctgagccccattttttaatggagtttttatatt
ttctggagtccaccttcctgcgttctttatatattggatattagtcccct
atctgatttaggataggtaaagatcctttcccaatctgttgtcagccttt
ttgtcttattgacggtgtcttttgccttacagaagctttgcagttttatg
aggtcccgtttgtcaattctcaatcttacaggacaagtcattgttgttct
atttaggaatttttcccctgttcccatatcttccaggcttttaacaagca
cttaagctagattgtccactacggagcctgggaggacacagtagaagagc
tgattgttcatgatgttaatattggtctaggtggtttccattaattttat
tatttctacctcctaatacttcctcagtctgggctttgtttttgtgtttt
agttactgaaataatttgtgtgactggcctaaaagtcacttagcatgtta
attgttgaagtcagaattcacatagatattgaagtctttcacgatggccc
atacttttgtgatgtcatgaaagaaaatacctgcattatattcactaata
tatttttattacataaaacctgagtcctgtttcgtatgctaagaatgcaa
aattaaatgaaaaacaaccaaacaaacccccttactttagagccattcta
ctgaaattgaacctggatgcaggagtgccaagaggcaatcaaagagacaa
gaaaaaagtggaatcaaagtatgtcacatgaactacacaatgtggtatgg
tcttactcaaacaccaagtaagtttagagttttgagcttcctgggacgtt
agtggactatagtttccaccttaaagcagctccaaagaaatccagcacaa
ttgtctgtagccatggaacagaaaggcacattcaccatgttcttctcact
tccattttgctttgctgtgtacacacattttaagatgggcatcttgaaga
tgcgttagttagctgtaatgggcaccagtcctgaaggagggttttccttt
acccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_55063092_55064255
seq2: B6Ng01-109O01.b_47_1200 (reverse)

seq1  GCATGTGTGGGGTGG--GGTAGCCTGTTTTTGGGTTTATGTTTCTCAGAG  48
      |||| ||||||| ||  |||||||||||||  || |||||||||||| ||
seq2  GCAT-TGTGGGGAGGTAGGTAGCCTGTTTT--GGGTTATGTTTCTCAAAG  47

seq1  TTTCCATTTCA-TTCTGTGCCTCTTCCGAAGAAGGACTTCTTTGATATTC  97
        ||||  ||| ||||||||||||||||||||| |||||| |||||| ||
seq2  AGTCCA--TCATTTCTGTGCCTCTTCCGAAGAA-GACTTC-TTGATA-TC  92

seq1  TGCTCCACTGGGATCTAATGCAGGAATCCAATGCACAAGCAGTTGCCTGC  147
      |||||||||||||||| ||||| ||||||||||||||||||||   ||||
seq2  TGCTCCACTGGGATCT-ATGCA-GAATCCAATGCACAAGCAGT--GCTGC  138

seq1  TC-TATATTTGTTAAACACTGAGAATCATGGCTGCTTAAATGAATTAACC  196
      || |||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  TCTTATATTTGTTAAACACTGAG-ATCATGGCTGC-TAAATGAATTAACC  186

seq1  CCAGTGAGAGAGGATCTGTGATCCTTGCCAGACAAAAGGTGAACTTGCTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAGAGAGGATCTGTGATCCTTGCCAGACAAAAGGTGAACTTGCTC  236

seq1  AGAACAACTTAGTACTCTGACTTAGAAAGCAAAGTTTCCAGGGTGATGAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAACTTAGTACTCTGACTTAGAAAGCAAAGTTTCCAGGGTGATGAG  286

seq1  ATCTAGTAATAAGAGACAATATCATGATTAAGTCAGGCACTTGAGTGAGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTAATAAGAGACAATATCATGATTAAGTCAGGCACTTGAGTGAGC  336

seq1  CCAATGGAATGTTAAACACTAACAGAAAATTAATAAGGGACTGTTTCTGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGAATGTTAAACACTAACAGAAAATTAATAAGGGACTGTTTCTGC  386

seq1  TCATTCCTAGGTCAGTGAAGTCCAACGCCTTGCTGTTTTCCATTTCAATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTAGGTCAGTGAAGTCCAACGCCTTGCTGTTTTCCATTTCAATG  436

seq1  GTGGAATGAGCACTTGGCCTAATGAAGAAAGTCAATCTGTCAACCTGTGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATGAGCACTTGGCCTAATGAAGAAAGTCAATCTGTCAACCTGTGC  486

seq1  AGACAAGTTTGTCTGCATGTACTACCGTAAGGGTCCATGATTCTTTGAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGTTTGTCTGCATGTACTACCGTAAGGGTCCATGATTCTTTGAAG  536

seq1  AATGATACCCCAGGCTCAAATAGTATGTAAATGCAAAGCGTGCTTTATTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATACCCCAGGCTCAAATAGTATGTAAATGCAAAGCGTGCTTTATTC  586

seq1  TGCAGAAGTCCAGCATGCTGGGGCCATTCCCCATTACCAGAATAGACAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAGTCCAGCATGCTGGGGCCATTCCCCATTACCAGAATAGACAGC  636

seq1  CACTTAAGTGAGTTTGCAGGCCTGATCTAAAGCACATTAGAGAATTCCCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAAGTGAGTTTGCAGGCCTGATCTAAAGCACATTAGAGAATTCCCA  686

seq1  GGTAGGTGATCTCTATGTTAATCTGTTGGGTCCATCTCTATGAACATTCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGTGATCTCTATGTTAATCTGTTGGGTCCATCTCTATGAACATTCC  736

seq1  ATTACCTGGGTGTGGGGGCTGGAAACTTTCTGGGGAGGACTGGAAACTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTGGGTGTGGGGGCTGGAAACTTTCTGGGGAGGACTGGAAACTGT  786

seq1  TGCTGAAGAATTAGCTGAGGAAGTCTGGAAAGTGTTTCAGACCCATTGTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAGAATTAGCTGAGGAAGTCTGGAAAGTGTTTCAGACCCATTGTC  836

seq1  CTTGCCTCAGGCCAGGTGGTGGCCTCTTCTGAGATTAGACTTCCCTGGAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTCAGGCCAGGTGGTGGCCTCTTCTGAGATTAGACTTCCCTGGAA  886

seq1  TTACCCAGTTCTTGGGAACAGAGATTCGGCCTAGTCTCCTTAACTGCCAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCAGTTCTTGGGAACAGAGATTCGGCCTAGTCTCCTTAACTGCCAA  936

seq1  CTTAAAGCCTGTTATGGAATCAGCCGAGCCTTCTCAGTACAACTCTGCCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGCCTGTTATGGAATCAGCCGAGCCTTCTCAGTACAACTCTGCCT  986

seq1  CAGGTTGAAGATGGGTTCCAATTAACAACTCAAAGTTAGGGTATATCACA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGAAGATGGGTTCCAATTAACAACTCAAAGTTAGGGTATATCACA  1036

seq1  CAAAAGAATGAGGGAATCTCCAAAGACTACTTTTTAATAGGGTTGACCTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAATGAGGGAATCTCCAAAGACTACTTTTTAATAGGGTTGACCTT  1086

seq1  TATAAGGTTTCGTTTTCGTGACAAGCTATGTCACAATAAAATCTAGAGGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGTTTCGTTTTCGTGACAAGCTATGTCACAATAAAATCTAGAGGA  1136

seq1  AACAAAACTAATGAATTC  1164
      ||||||||||||||||||
seq2  AACAAAACTAATGAATTC  1154

seq1: chr2_54916386_54917405
seq2: B6Ng01-109O01.g_112_1120

seq1  TATTTTCTGGAGTCCACCTTCCTGCGTTCTTTATATATTGGATATTAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTGGAGTCCACCTTCCTGCGTTCTTTATATATTGGATATTAGTC  50

seq1  CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGTCAGC  100

seq1  CTTTTTGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTT  150

seq1  TATGAGGTCCCGTTTGTCAATTCTCAATCTTACAGGACAAGTCATTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGTCCCGTTTGTCAATTCTCAATCTTACAGGACAAGTCATTGTTG  200

seq1  TTCTATTTAGGAATTTTTCCCCTGTTCCCATATCTTCCAGGCTTTTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTAGGAATTTTTCCCCTGTTCCCATATCTTCCAGGCTTTTAACA  250

seq1  AGCACTTAAGCTAGATTGTCCACTACGGAGCCTGGGAGGACACAGTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTAAGCTAGATTGTCCACTACGGAGCCTGGGAGGACACAGTAGAA  300

seq1  GAGCTGATTGTTCATGATGTTAATATTGGTCTAGGTGGTTTCCATTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGATTGTTCATGATGTTAATATTGGTCTAGGTGGTTTCCATTAATT  350

seq1  TTATTATTTCTACCTCCTAATACTTCCTCAGTCTGGGCTTTGTTTTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTTCTACCTCCTAATACTTCCTCAGTCTGGGCTTTGTTTTTGTG  400

seq1  TTTTAGTTACTGAAATAATTTGTGTGACTGGCCTAAAAGTCACTTAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTACTGAAATAATTTGTGTGACTGGCCTAAAAGTCACTTAGCAT  450

seq1  GTTAATTGTTGAAGTCAGAATTCACATAGATATTGAAGTCTTTCACGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTGTTGAAGTCAGAATTCACATAGATATTGAAGTCTTTCACGATG  500

seq1  GCCCATACTTTTGTGATGTCATGAAAGAAAATACCTGCATTATATTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATACTTTTGTGATGTCATGAAAGAAAATACCTGCATTATATTCACT  550

seq1  AATATATTTTTATTACATAAAACCTGAGTCCTGTTTCGTATGCTAAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTTTTATTACATAAAACCTGAGTCCTGTTTCGTATGCTAAGAAT  600

seq1  GCAAAATTAAATGAAAAACAACCAAACAAACCCCCTTACTTTAGAGCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATTAAATGAAAAACAACCAAACAAACCCCCTTACTTTAGAGCCAT  650

seq1  TCTACTGAAATTGAACCTGGATGCAGGAGTGCCAAGAGGCAATCAAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGAAATTGAACCTGGATGCAGGAGTGCCAAGAGGCAATCAAAGAG  700

seq1  ACAAGAAAAAAGTGGAAATCAAAGTATGTCACATGAACTACACAATGTGG  750
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACAAGAAAAAAGTGG-AATCAAAGTATGTCACATGAACTACACAATGTGG  749

seq1  TATGGTCTTACTCAAACACCAAGTAAGTTTAGAGTTTTGAGCTTCCTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCTTACTCAAACACCAAGTAAGTTTAGAGTTTTGAGCTTCCTGGG  799

seq1  ACGTTAGTGGACTATAGGTTTCCACCTTAAAAGCAGGCTCCAAAGAAATC  850
      |||||||||||||||| ||||||||||| |||||| ||||||||||||||
seq2  ACGTTAGTGGACTATA-GTTTCCACCTT-AAAGCA-GCTCCAAAGAAATC  846

seq1  CAGCACAA-TGTCTGTAGCCATGGAAACAGAAAGGCACATTCACCATGTT  899
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  CAGCACAATTGTCTGTAGCCATGG-AACAGAAAGGCACATTCACCATGTT  895

seq1  CTTCTCACTTCCATTTTGCTTGGCTGTGTACACACATTTTAAGATGGGCA  949
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTTCTCACTTCCATTTTGCTTTGCTGTGTACACACATTTTAAGATGGGCA  945

seq1  TCTTGAAGATGCGTTAGTGTTTAGCTGTTAATGGGCAACAGTCATGATAG  999
      |||||||||||||||||   ||||||| ||||||||| ||||| ||| ||
seq2  TCTTGAAGATGCGTTAG---TTAGCTG-TAATGGGCACCAGTCCTGA-AG  990

seq1  GAGGGTTTTTCCTTTTACCCC  1020
      |||||||||  | ||||||||
seq2  GAGGGTTTT--CCTTTACCCC  1009