BAC Information

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BAC

Clone NameB6Ng01-109O10
Chromosome2 (Build37)
Map Location 163,490,596 - 163,528,660
singlet/doubletdoublet
Overlap genePkig
Upstream geneLOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3
Downstream geneAda, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109O10.bB6Ng01-109O10.g
ACCDH916679DH916680
length1,1571,032
definitionDH916679|Mus musculus domesticus DNA, BAC clone: B6Ng01-109O10, 5' end.DH916680|Mus musculus domesticus DNA, BAC clone: B6Ng01-109O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,527,426 - 163,528,660)(163,490,596 - 163,491,642)
sequence
gaattctttgtgttggcatgcaggtttctatgaacctaggtcagccaagg
ccacaaagtgaaaaatagaaaaaaagtctaaaacagaaacccccgcaatc
cagccctgggagtggctggctgctgggaactggctgcttcaaaccactga
atctctgctcactgggagctgcacccagcagatgccctggcttccataga
cgtgagagcaggaggccagagaagagaaatgtgaacactttttgaaccgt
ttagccagaaggagaggacagaggaaatgcgacagtgaagtgaaagaggc
cgagcactcacaacaggtgctgtagcctgtcagtcccctggaggcgcctc
gcttcaagcttttgctccattgataaagattccaatgaaagagcagtaac
gcctccatctctacatatcctaaaagcatattttgctttgcctctcactg
cattcaatctttttgccctgtacacttcttcatggcagtgaccaccatgt
aggcccacatccccatgccctgaagcactgtgaaccataggcccacatcc
ccaggtcctgtggcactgcgaaccataggcctacatccccaggccctgag
gcactgcgaaccataggcccacatccccaggccccgaggcgctgcgaacc
ataggcccacatccccaggccctgtggcactgtgaaccataggcccacat
ctccaggccctgaggcactgtgaaccataggcccacatccccaggccctg
aggccctgagaaccataggcccacatccccaggccctgaggcactgtgaa
ccataggcccacatccccaggccctgagaaccataggcccacgtccccag
gccccgaggcactgcgaaccataggcccacatccccaggccctgaggcac
tgtgaaccataggcccacatccccaggccctgagaccataggcccacatc
cccaggcccgaggcactgcgaccatagcccacatccccaggccctgagca
ctgtgacatagcccacatctcaggccctgagacatagcccacatcccagc
ctgagaacatagcccacgtccaagccgagcactgtgacatagccaatccc
agccctgagcactggacataggcccaattccagccgaggactgtgaacat
aggccca
gaattccaggacagctagaactacatagtgagaccctgtctcccaaaagc
aaaacagaaacatttttaaaaatctaaaacataaatcttaaaatgaatga
ataaagaaaaaagaattcacagggtctggatgaccttagcccatcccctc
ctctagacctatatccttgagatctgcttcagagcatcttggagggagcc
aggtgttaaactgacatttgtaaatagctcaacacttcaaatttctgaaa
gatgcaagcccataatctcatgtcccctaggcagcagctctgtgaggtgg
ggaagatcctcccagttttcagaggggaaaaccttaggtgagaggattct
ggagactcttggaagctgtgacctctaagtcctagggtttaaaatttcag
ctttcctcctatgcctttctatatttttcttctcccttcctccctcccgt
tcacctttccttctcaactggagattgaaggagcccagggctaggcaatg
atagaatgctgagtaataaatccctcagccctagcccaatgctgcttttg
agacaatctctagccctggccggtagtgaattcccactaagtagggggaa
atgtccttgaacttctgaacctagagggatgctccaccacgcacaggttt
ctgtagtgctgcgactcacactcagggcttcctgcatgctaggcaagcac
tctaccaattgagccacaccctgagcccctattcttcaagtacttttttg
gagagattgcaaataccttttagaaaaaggtaccttggcattacagtgat
cttgtcttgcttcatttgatggttacagcttttccccaagctgcccagct
tttctgttcacaatgattcactctgggagaaactgttcaaagatggcagc
atccatgattctgtgttctacagagtagtacagtcagtgtatatcctgtc
tactatccttcccagtctctatgtcccagcacactctctacttctgtcct
ttctgtggtgtgagtgtgtatgtgtagggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_163527426_163528660
seq2: B6Ng01-109O10.b_49_1205 (reverse)

seq1  TGGGCCTATGGTTCACAGTGCCTCAGGGCCTGGGGATGTGGGCCTATGGT  50
                                            ||||||||| ||
seq2  --------------------------------------TGGGCCTAT-GT  11

seq1  TCACAGTGCCTCGGGGCCTGGGGATGTGGGCCTATGGTTCACAGTGCCTC  100
      ||||||| ||||||   ||  |||  ||||||||||  || ||||| |||
seq2  TCACAGT-CCTCGG---CT--GGAATTGGGCCTATG--TC-CAGTG-CTC  51

seq1  AGGGCCTGGGGATGTGGGCCTATGGTTCACAGTGCCTCGGGGCCTGGGGA  150
      |||||   ||||| |||  |||||  |||||||| |||||   ||  |||
seq2  AGGGC--TGGGAT-TGG--CTATG--TCACAGTG-CTCGG---CT-TGGA  89

seq1  CGTGGGCCTATGGTTCTCAGGGCCTTGGGATGTGGGCCTATGGTTCTCAG  200
      |||||| |||| |||||||||    ||||||||||| |||||  ||||||
seq2  CGTGGG-CTAT-GTTCTCAGG---CTGGGATGTGGG-CTATG--TCTCAG  131

seq1  GGCCTGGAGATGTGGGCCTATGGTTCACAGTGCCTCAGGGCCTGGGGATG  250
      ||||| |||||||||| |||||  |||||||| |||||||||||||||||
seq2  GGCCT-GAGATGTGGG-CTATG--TCACAGTG-CTCAGGGCCTGGGGATG  176

seq1  TGGGCCTATGGTTCGCAGTGCCTCGGGGCCTGGGGATGTGGGCCTATGGT  300
      |||| |||||| |||||||||||| |||||||||||||||||||||||| 
seq2  TGGG-CTATGG-TCGCAGTGCCTC-GGGCCTGGGGATGTGGGCCTATGG-  222

seq1  TCTCAGGGCCTGGGGATGTGGGCCTATGGTTCACAGTGCCTCAGGGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGGCCTGGGGATGTGGGCCTATGGTTCACAGTGCCTCAGGGCCTG  272

seq1  GGGATGTGGGCCTATGGTTCGCAGTGCCTCGGGGCCTGGGGACGTGGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTGGGCCTATGGTTCGCAGTGCCTCGGGGCCTGGGGACGTGGGCC  322

seq1  TATGGTTCTCAGGGCCTGGGGATGTGGGCCTATGGTTCACAGTGCCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTCTCAGGGCCTGGGGATGTGGGCCTATGGTTCACAGTGCCTCAG  372

seq1  GGCCTGGGGATGTGGGCCTATGGTTCTCAGGGCCTCAGGGCCTGGGGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGGGATGTGGGCCTATGGTTCTCAGGGCCTCAGGGCCTGGGGATG  422

seq1  TGGGCCTATGGTTCACAGTGCCTCAGGGCCTGGAGATGTGGGCCTATGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTATGGTTCACAGTGCCTCAGGGCCTGGAGATGTGGGCCTATGGT  472

seq1  TCACAGTGCCACAGGGCCTGGGGATGTGGGCCTATGGTTCGCAGCGCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTGCCACAGGGCCTGGGGATGTGGGCCTATGGTTCGCAGCGCCTC  522

seq1  GGGGCCTGGGGATGTGGGCCTATGGTTCGCAGTGCCTCAGGGCCTGGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTGGGGATGTGGGCCTATGGTTCGCAGTGCCTCAGGGCCTGGGGA  572

seq1  TGTAGGCCTATGGTTCGCAGTGCCACAGGACCTGGGGATGTGGGCCTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCCTATGGTTCGCAGTGCCACAGGACCTGGGGATGTGGGCCTATG  622

seq1  GTTCACAGTGCTTCAGGGCATGGGGATGTGGGCCTACATGGTGGTCACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAGTGCTTCAGGGCATGGGGATGTGGGCCTACATGGTGGTCACTG  672

seq1  CCATGAAGAAGTGTACAGGGCAAAAAGATTGAATGCAGTGAGAGGCAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAGAAGTGTACAGGGCAAAAAGATTGAATGCAGTGAGAGGCAAAG  722

seq1  CAAAATATGCTTTTAGGATATGTAGAGATGGAGGCGTTACTGCTCTTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATGCTTTTAGGATATGTAGAGATGGAGGCGTTACTGCTCTTTCA  772

seq1  TTGGAATCTTTATCAATGGAGCAAAAGCTTGAAGCGAGGCGCCTCCAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATCTTTATCAATGGAGCAAAAGCTTGAAGCGAGGCGCCTCCAGGG  822

seq1  GACTGACAGGCTACAGCACCTGTTGTGAGTGCTCGGCCTCTTTCACTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACAGGCTACAGCACCTGTTGTGAGTGCTCGGCCTCTTTCACTTCA  872

seq1  CTGTCGCATTTCCTCTGTCCTCTCCTTCTGGCTAAACGGTTCAAAAAGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCGCATTTCCTCTGTCCTCTCCTTCTGGCTAAACGGTTCAAAAAGTG  922

seq1  TTCACATTTCTCTTCTCTGGCCTCCTGCTCTCACGTCTATGGAAGCCAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTTCTCTTCTCTGGCCTCCTGCTCTCACGTCTATGGAAGCCAGG  972

seq1  GCATCTGCTGGGTGCAGCTCCCAGTGAGCAGAGATTCAGTGGTTTGAAGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGCTGGGTGCAGCTCCCAGTGAGCAGAGATTCAGTGGTTTGAAGC  1022

seq1  AGCCAGTTCCCAGCAGCCAGCCACTCCCAGGGCTGGATTGCGGGGGTTTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTTCCCAGCAGCCAGCCACTCCCAGGGCTGGATTGCGGGGGTTTC  1072

seq1  TGTTTTAGACTTTTTTTCTATTTTTCACTTTGTGGCCTTGGCTGACCTAG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGACTTTTTTTCTATTTTTCACTTTGTGGCCTTGGCTGACCTAG  1122

seq1  GTTCATAGAAACCTGCATGCCAACACAAAGAATTC  1235
      |||||||||||||||||||||||||||||||||||
seq2  GTTCATAGAAACCTGCATGCCAACACAAAGAATTC  1157

seq1: chr2_163490596_163491642
seq2: B6Ng01-109O10.g_67_1098

seq1  GAATTCCAGGACAGCTAGAACTACATAGTGAGACCCTGTCTCCCAAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCTAGAACTACATAGTGAGACCCTGTCTCCCAAAAGC  50

seq1  AAAACAGAAACATTTTTAAAAATCTAAAACATAAATCTTAAAATGAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAAACATTTTTAAAAATCTAAAACATAAATCTTAAAATGAATGA  100

seq1  ATAAAGAAAAAAGAATTCACAGGGTCTGGATGACCTTAGCCCATCCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAAAAAGAATTCACAGGGTCTGGATGACCTTAGCCCATCCCCTC  150

seq1  CTCTAGACCTATATCCTTGAGATCTGCTTCAGAGCATCTTGGAGGGAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGACCTATATCCTTGAGATCTGCTTCAGAGCATCTTGGAGGGAGCC  200

seq1  AGGTGTTAAACTGACATTTGTAAATAGCTCAACACTTCAAATTTCTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTAAACTGACATTTGTAAATAGCTCAACACTTCAAATTTCTGAAA  250

seq1  GATGCAAGCCCATAATCTCATGTCCCCTAGGCAGCAGCTCTGTGAGGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAGCCCATAATCTCATGTCCCCTAGGCAGCAGCTCTGTGAGGTGG  300

seq1  GGAAGATCCTCCCAGTTTTCAGAGGGGAAAACCTTAGGTGAGAGGATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATCCTCCCAGTTTTCAGAGGGGAAAACCTTAGGTGAGAGGATTCT  350

seq1  GGAGACTCTTGGAAGCTGTGACCTCTAAGTCCTAGGGTTTAAAATTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTCTTGGAAGCTGTGACCTCTAAGTCCTAGGGTTTAAAATTTCAG  400

seq1  CTTTCCTCCTATGCCTTTCTATATTTTTCTTCTCCCTTCCTCCCTCCCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCCTATGCCTTTCTATATTTTTCTTCTCCCTTCCTCCCTCCCGT  450

seq1  TCACCTTTCCTTCTCAACTGGAGATTGAAGGAGCCCAGGGCTAGGCAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTTCCTTCTCAACTGGAGATTGAAGGAGCCCAGGGCTAGGCAATG  500

seq1  ATAGAATGCTGAGTAATAAATCCCTCAGCCCTAGCCCAATGCTGCTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATGCTGAGTAATAAATCCCTCAGCCCTAGCCCAATGCTGCTTTTG  550

seq1  AGACAATCTCTAGCCCTGGCCGGTAGTGAATTCCCACTAAGTAGGGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATCTCTAGCCCTGGCCGGTAGTGAATTCCCACTAAGTAGGGGGAA  600

seq1  ATGTCCTTGAACTTCTGAACCTAGAGGGATGCTCCACCACGCACAGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTTGAACTTCTGAACCTAGAGGGATGCTCCACCACGCACAGGTTT  650

seq1  CTGTAGTGCTGCGACTCACACTCAGGGCTTCCTGCATGCTAGGCAAGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTGCTGCGACTCACACTCAGGGCTTCCTGCATGCTAGGCAAGCAC  700

seq1  TCTACCAATTGAGCCACACCCTGAGCCCCTATTCTTCAAGTACTTTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCAATTGAGCCACACCCTGAGCCCCTATTCTTCAAGTACTTTTTTG  750

seq1  GAGAGATTGCAAATACCTTTTAGAAAAAGGTACCTTGGCATTACAGTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATTGCAAATACCTTTTAGAAAAAGGTACCTTGGCATTACAGTGAT  800

seq1  CTTGTCTTGCTTCATTTGATGGTTACAGCTTTTCCCCAAGCTGCCCAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTTGCTTCATTTGATGGTTACAGCTTTTCCCCAAGCTGCCCAGCT  850

seq1  TTTCTGTTCACAATGATTCACTCTGGGAGAAACTGTTCAAAGATGGCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTCACAATGATTCACTCTGGGAGAAACTGTTCAAAGATGGCAGC  900

seq1  ATCCATGATTCTGTGTTCTACAGAGTAGGTACAGTCAAGTGTATATCCTG  950
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  ATCCATGATTCTGTGTTCTACAGAGTA-GTACAGTC-AGTGTATATCCTG  948

seq1  TCCTTAACTATCCCTTCCCCAGTCTCCTAATGTCCCCAGCACACCTCCTC  1000
      ||    |||||||  | |||||||||   |||| ||||||||| |||   
seq2  TC---TACTATCC--TTCCCAGTCTC--TATGT-CCCAGCACA-CTC--T  987

seq1  CTACCTTCCTGTCCTTTCTGTGGTGTGAGTGTGTATGTGTAGGGGGG  1047
      ||||  | |||||||||||||||||||||||||||||||||||||||
seq2  CTAC--TTCTGTCCTTTCTGTGGTGTGAGTGTGTATGTGTAGGGGGG  1032