BAC Information

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BAC

Clone NameB6Ng01-110C03
Chromosome2 (Build37)
Map Location 144,893,914 - 145,026,293
singlet/doubletdoublet
Overlap genenone
Upstream gene4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110C03.bB6Ng01-110C03.g
ACCDH916843DH916844
length3001,070
definitionDH916843|Mus musculus domesticus DNA, BAC clone: B6Ng01-110C03, 5' end.DH916844|Mus musculus domesticus DNA, BAC clone: B6Ng01-110C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,893,914 - 144,894,213)(145,025,216 - 145,026,293)
sequence
tcctgtgttttcctgagcatctgggatagattaagctgcttcctttgaag
ttcccttcatggagctttcagtagctaagtgatttttttgttgagaaatg
ggcatggactgagttggtgaaattatcacttctactgatctgttttaaga
agcactgaagatataaatatgaagacaagacaagtttgtttctatatcat
atcctttttttggcaatcttcagggtcagcatctaagatactaattctca
agaactggttaataggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

gaattcagccccagatgcctaatctggtgtatgtgagatcagtatgtttt
tttctaaacaacagcctgaccccaaaattagagtgacagaattgcttgaa
gaggacccaggccatctgcagaaaatggtcctaggccagaaggaggaact
gggggtggaaactttactcatacttctggagacacctgaggacatcctcc
tcccagtgctgtctagtagtcacacaaccctggtatctcgtagtaggcaa
actaagcccagacatatgactaagctttgatgggcctcaaacggggcccc
atctaggccctacccaactgccatatctgtatagctactttctcacttgc
ctagtgttcttgatttcagaagatgttcttcccaaacctactgaatggta
ccatataaactggttggtccagggagttcataaagtgacttgcaagaata
ataagtatagagctaagacaggccaacacacagcaggtataaactagaat
ccattccttgtccaggcaccgctctggtgccatgatcagtgactgctcat
ggcttccagctacccttgtcttccagagaaatctaccttttttcagaggc
tatacacctgccatgcatcccatgccaggaatagccagggattaggggct
agggactagggactagttagtgctgaactgggaaatacaaacgttgacct
tgagatcagatcaactctgatgtccttatgttttggggttcccagtggga
ttgaccagactccagccaagccaatattcccagctgcctctcctgcttcc
aactgtcaaaaactatagtggtgctaaccagaggcagggatgacttcctg
ggagaggtcaagtgctaccttattgttttactaccccagtgggtaggggt
ggggacaatgattgtatacagcactcccagaatagcttttgtgtgctaga
gcccagactcatgtcaagctgcctgcagggtctcacaccattcccagtca
cttgtctttctactcctcagagcacagtataagtagagaactagggtgct
ctctaccaccatacagtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_144893914_144894213
seq2: B6Ng01-110C03.b_51_350

seq1  TCCTGTGTTTTCCTGAGCATCTGGGATAGATTAAGCTGCTTCCTTTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTTTTCCTGAGCATCTGGGATAGATTAAGCTGCTTCCTTTGAAG  50

seq1  TTCCCTTCATGGAGCTTTCAGTAGCTAAGTGATTTTTTTGTTGAGAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTCATGGAGCTTTCAGTAGCTAAGTGATTTTTTTGTTGAGAAATG  100

seq1  GGCATGGACTGAGTTGGTGAAATTATCACTTCTACTGATCTGTTTTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGACTGAGTTGGTGAAATTATCACTTCTACTGATCTGTTTTAAGA  150

seq1  AGCACTGAAGATATAAATATGAAGACAAGACAAGTTTGTTTCTATATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGAAGATATAAATATGAAGACAAGACAAGTTTGTTTCTATATCAT  200

seq1  ATCCTTTTTTTGGCAATCTTCAGGGTCAGCATCTAAGATACTAATTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTTTTTGGCAATCTTCAGGGTCAGCATCTAAGATACTAATTCTCA  250

seq1  AGAACTGGTTAATAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGGTTAATAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  300

seq1: chr2_145025216_145026293
seq2: B6Ng01-110C03.g_68_1137 (reverse)

seq1  CAAACTGTATGTGTGTAAGAGAGCACACTAGTATCTCTACCTATAACTGT  50
      ||||||||||| |||  ||||||||| ||||| ||||||| ||| |||||
seq2  CAAACTGTATG-GTGGTAGAGAGCACCCTAGT-TCTCTACTTAT-ACTGT  47

seq1  GCTCTGAGAAGTAGATAGACAAGTGACTGGGAATGGTGTGAGACCCCTTG  100
      |||||||| |||||| ||||||||||||||||||||||||||||||  ||
seq2  GCTCTGAGGAGTAGAAAGACAAGTGACTGGGAATGGTGTGAGACCC--TG  95

seq1  CAGGCAGCCTTGACATGAGTCTTGGGCTCTAGCACAC-AAAGCTATTCTG  149
      ||||||| ||||||||||||| ||||||||||||||| ||||||||||||
seq2  CAGGCAG-CTTGACATGAGTC-TGGGCTCTAGCACACAAAAGCTATTCTG  143

seq1  GGAGTGCTGTATACAATCATTTGTCCCCACCCCTACCCACTGGGGTAGTA  199
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGAGTGCTGTATACAATCA-TTGTCCCCACCCCTACCCACTGGGGTAGTA  192

seq1  AAACAATAAGGTAGCACTTGACCTCCTCCCAGGAAGTCATCCCTGCCTCT  249
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAACAATAAGGTAGCACTTGACCT-CTCCCAGGAAGTCATCCCTGCCTCT  241

seq1  GGTTAGCACCACTATAGTTTTTGACAGTTGGAAGCAGGAGAGGCAGCTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGCACCACTATAGTTTTTGACAGTTGGAAGCAGGAGAGGCAGCTGG  291

seq1  GAATATTGGCTTGGCTGGAGTCTGGTCAATCCCACTGGGAACCCCAAAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTGGCTTGGCTGGAGTCTGGTCAATCCCACTGGGAACCCCAAAAC  341

seq1  ATAAGGACATCAGAGTTGATCTGATCTCAAGGTCAACGTTTGTATTTCCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGACATCAGAGTTGATCTGATCTCAAGGTCAACGTTTGTATTTCCC  391

seq1  AGTTCAGCACTAACTAGTCCCTAGTCCCTAGCCCCTAATCCCTGGCTATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGCACTAACTAGTCCCTAGTCCCTAGCCCCTAATCCCTGGCTATT  441

seq1  CCTGGCATGGGATGCATGGCAGGTGTATAGCCTCTGAAAAAAGGTAGATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCATGGGATGCATGGCAGGTGTATAGCCTCTGAAAAAAGGTAGATT  491

seq1  TCTCTGGAAGACAAGGGTAGCTGGAAGCCATGAGCAGTCACTGATCATGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGAAGACAAGGGTAGCTGGAAGCCATGAGCAGTCACTGATCATGG  541

seq1  CACCAGAGCGGTGCCTGGACAAGGAATGGATTCTAGTTTATACCTGCTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAGCGGTGCCTGGACAAGGAATGGATTCTAGTTTATACCTGCTGT  591

seq1  GTGTTGGCCTGTCTTAGCTCTATACTTATTATTCTTGCAAGTCACTTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGCCTGTCTTAGCTCTATACTTATTATTCTTGCAAGTCACTTTAT  641

seq1  GAACTCCCTGGACCAACCAGTTTATATGGTACCATTCAGTAGGTTTGGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCCTGGACCAACCAGTTTATATGGTACCATTCAGTAGGTTTGGGA  691

seq1  AGAACATCTTCTGAAATCAAGAACACTAGGCAAGTGAGAAAGTAGCTATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATCTTCTGAAATCAAGAACACTAGGCAAGTGAGAAAGTAGCTATA  741

seq1  CAGATATGGCAGTTGGGTAGGGCCTAGATGGGGCCCCGTTTGAGGCCCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATGGCAGTTGGGTAGGGCCTAGATGGGGCCCCGTTTGAGGCCCAT  791

seq1  CAAAGCTTAGTCATATGTCTGGGCTTAGTTTGCCTACTACGAGATACCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTTAGTCATATGTCTGGGCTTAGTTTGCCTACTACGAGATACCAG  841

seq1  GGTTGTGTGACTACTAGACAGCACTGGGAGGAGGATGTCCTCAGGTGTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGTGACTACTAGACAGCACTGGGAGGAGGATGTCCTCAGGTGTCT  891

seq1  CCAGAAGTATGAGTAAAGTTTCCACCCCCAGTTCCTCCTTCTGGCCTAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTATGAGTAAAGTTTCCACCCCCAGTTCCTCCTTCTGGCCTAGG  941

seq1  ACCATTTTCTGCAGATGGCCTGGGTCCTCTTCAAGCAATTCTGTCACTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTTCTGCAGATGGCCTGGGTCCTCTTCAAGCAATTCTGTCACTCT  991

seq1  AATTTTGGGGTCAGGCTGTTGTTTAGAAAAAAACATACTGATCTCACATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGGGGTCAGGCTGTTGTTTAGAAAAAAACATACTGATCTCACATA  1041

seq1  CACCAGATTAGGCATCTGGGGCTGAATTC  1078
      |||||||||||||||||||||||||||||
seq2  CACCAGATTAGGCATCTGGGGCTGAATTC  1070