BAC Information

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BAC

Clone NameB6Ng01-110H13
Chromosome2 (Build37)
Map Location 103,646,570 - 103,770,022
singlet/doubletdoublet
Overlap geneLOC433458, LOC100042961, LOC100042965
Upstream geneCd44, Pdhx, Apip, Ehf, Elf5, Cat, Abtb2, Nat10, Caprin1
Downstream geneLmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110H13.bB6Ng01-110H13.g
ACCDH917085DH917086
length9921,079
definitionDH917085|Mus musculus domesticus DNA, BAC clone: B6Ng01-110H13, 5' end.DH917086|Mus musculus domesticus DNA, BAC clone: B6Ng01-110H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,646,570 - 103,647,589)(103,768,911 - 103,770,022)
sequence
gaattctcttcactgtgcctaggcctcacccaagtgccctcatactgtgt
tttctacacagccctcctgttctctctctctctctccctccctccctccc
tccctccctctctttctttctttctttctttctttctttcttttttttct
ttttgagacagggtttctctgtgtagccctggctgtcctggaactcactc
tgtataccaggctggccttgaactcagaaatccacctgcttctgcctccc
aaatgctgggattaaaggtgtgtgccaccatgcccggctggtaacctatt
ttcttttcttttctttctttctttctttctttctttctttctttctttct
ttctttctttctttctttctttctttctttctttctgtttgttttttcga
gacagggtttctctgtatagccctggctgtcctggagctcactttgtaga
ccaggctggctttgaattcagaaatctgcctgcctgtgcctccagagtgc
tgggattaaaggcgtgtgccaccgtgttgagaatgaaatgtcagagtgtg
catatgcaggtcagaaagcaactttgagcggttggctttccatccacttt
gaggtgggttctaggaatcaaacccaggatgtcagactttgattagcaag
aatatttacctgctgagccatctcactggttcttagataacctactctta
aaaatcatctcagttaattttttttgtagagtcattaaacacctactatt
ctttaaagaaaataattagagaaaataaatcctaagtcatttgttcttat
acaaaaaaattatagtttctgtactttggtcttatctaattttttagtca
gatagatagaataatcaaataaagtaatatgactaccaccctttgaccac
tactgtactctgaaactcatgtggtctcttaatgtgtatatatagcacag
tcttttcatctacatataagacggaggctgggagtgctcagt
gaattcatcacatttttaaaagagtgcctaccgaatggttggccttgaca
tatgctctgatctattgtgcatattgcgacaaaaaaaaagtctctattct
caagaactgttggcagagggactcgtaaggcataaatagacagacgccta
tgacatgtaattagttaagccatacaggctgagaagttttaagactattt
taataagatagagaaaatgttgatgacatgttgctgaaacagtgggttat
taatgatcacatacagggagtccaatttgtaaaacagtatgcacatagga
gtacatgaatgcacataaatacatacatgtatacacatactctctcacac
acacatgtgcacacacgtgcacacacactcatacatgcactctcacacag
tcttacatatactctttctcacatacacatactatctttctcctacatac
acacactcacacacagagagagagagagagagagagagagagagaaatac
acacacacacacacacacacacacatattggtttgcgggatgaaaaataa
catactttgtctgaacagcctgcatagcgccatcatttaatggtcaatga
gtgactatctcagtagggctatttttttccctatactttctagatattct
ctagtaagtgtcattatttatataacaaagaagggatatcattgtgcaac
agggtgaaatacggagtagaagatcaaggcaaagctgtgtggattagtta
attttgttagaatggaaagtgagttgtgctgtcaagtctgaaaaataaat
tcaagctcagcagggcaaggtgtgcccactgatgcagtagcaacgtggct
gccatgggggtaaccagctgcattctgattggattttagacctactcaca
agagggaaatcatacctggccctgaaactagcaaaagcccatgatcatgg
agctatgggccataggaaactactattttgatatgctaatgcatgtgtca
cctgctctatcttattatataccatagcttctgctgcataaatacaggaa
aagtcttttgttatagcagtcattatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_103646570_103647589
seq2: B6Ng01-110H13.b_43_1034

seq1  GAATTCTCTTCACTGTGCCTAGGCCTCACCCAAGTGCCCTCATACTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCACTGTGCCTAGGCCTCACCCAAGTGCCCTCATACTGTGT  50

seq1  TTTCTACACAGCCCTCCTGTTCTCTCTCTCTCTCTCCCTCCCTCCCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACACAGCCCTCCTGTTCTCTCTCTCTCTCTCCCTCCCTCCCTCCC  100

seq1  TCCCTCCCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTCT  150

seq1  TTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTC  200

seq1  TGTATACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCTTCTGCCTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCTTCTGCCTCCC  250

seq1  AAATGCTGGGATTAAAGGTGTGTGCCACCATGCCCGGCTGGTAACCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGGGATTAAAGGTGTGTGCCACCATGCCCGGCTGGTAACCTATT  300

seq1  TTCTTTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  350

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTGTTTGTTTTTTCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTGTTTGTTTTTTCGA  400

seq1  GACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAGCTCACTTTGTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAGCTCACTTTGTAGA  450

seq1  CCAGGCTGGCTTTGAATTCAGAAATCTGCCTGCCTGTGCCTCCAGAGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGCTTTGAATTCAGAAATCTGCCTGCCTGTGCCTCCAGAGTGC  500

seq1  TGGGATTAAAGGCGTGTGCCACCGTGTTGAGAATGAAATGTCAGAGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAAGGCGTGTGCCACCGTGTTGAGAATGAAATGTCAGAGTGTG  550

seq1  CATATGCAGGTCAGAAAGCAACTTTGAGCGGTTGGCTTTCCATCCACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCAGGTCAGAAAGCAACTTTGAGCGGTTGGCTTTCCATCCACTTT  600

seq1  GAGGTGGGTTCTAGGAATCAAACCCAGGATGTCAGAC-TTGATTAGCAAG  649
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAGGTGGGTTCTAGGAATCAAACCCAGGATGTCAGACTTTGATTAGCAAG  650

seq1  AATATTTACCTGCTGAGCCATCTCACTGGTTCTTAGATAACCTACTCTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTACCTGCTGAGCCATCTCACTGGTTCTTAGATAACCTACTCTTA  700

seq1  AAAATCATCTCAGTTAATTTTTTTTGTAGAGTCATTAAACACCTACTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATCTCAGTTAATTTTTTTTGTAGAGTCATTAAACACCTACTATT  750

seq1  CTTTAAAGAAAATAATTAGAGAAAATAAATCCTAAGTCATTTGTTCTTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGAAAATAATTAGAGAAAATAAATCCTAAGTCATTTGTTCTTAT  800

seq1  ACAAAAAAAATTATAGTTTTCTGTACTTTTGGTCTTATTCTAATTTTTTT  849
      || ||||||||||||| ||||||||| |||||||||| ||||| ||||||
seq2  AC-AAAAAAATTATAG-TTTCTGTAC-TTTGGTCTTA-TCTAA-TTTTTT  845

seq1  AGTCAGAATAGATTAGAAATAATTCAAATAAAAGTAATTATGACTACCAC  899
      |||||| ||||| ||| ||||| |||||| ||||||| ||||||||||||
seq2  AGTCAG-ATAGA-TAG-AATAA-TCAAAT-AAAGTAA-TATGACTACCAC  889

seq1  CCTTTGACCACCTACTGTACTCTGAGAACTTCATGGTGTTCTCTTTAATG  949
      |||||||||| |||||||||||||| ||| |||| ||| |||| ||||||
seq2  CCTTTGACCA-CTACTGTACTCTGA-AAC-TCAT-GTGGTCTC-TTAATG  934

seq1  TGTATAATAATAGCACAGTCTTTTTCCATCTTACCAATAATAAAGAACGG  999
      ||||||   |||||||||||||||  |||| |||     ||| |  ||||
seq2  TGTATA--TATAGCACAGTCTTTT--CATC-TAC-----ATATAAGACGG  974

seq1  AGGCTGGGAAGGTGGCTCAGT  1020
      |||||||||  || |||||||
seq2  AGGCTGGGA--GT-GCTCAGT  992

seq1: chr2_103768911_103770022
seq2: B6Ng01-110H13.g_68_1146 (reverse)

seq1  TGCATTAATGACTGCCTACTACAAAAAGACTCTTCTCTGGCCAATGTTAA  50
      |||| ||||||||| ||| ||  |||||||| ||| |||     | || |
seq2  TGCA-TAATGACTG-CTA-TAACAAAAGACTTTTC-CTG-----TATTTA  41

seq1  TTGCAGCAGAAGCCTATGGGTATATAATATAGATTAAGAAGACAGTTTGA  100
       ||||||||||| |||| ||||||||||| ||||  || ||      |||
seq2  -TGCAGCAGAAG-CTAT-GGTATATAATA-AGATAGAGCAG-----GTGA  82

seq1  CAACATGGCCATTTAGCATATCAAAAATAGTAGTTTTCCCCTTATGGCCC  150
      | |||||  || |||||||||| |||||||||||||    | ||||||||
seq2  C-ACATG--CA-TTAGCATATC-AAAATAGTAGTTT----CCTATGGCCC  123

seq1  ATAGCCTCCATGATCATGGGCTTTTTGGCTAGGTTTCAAGGGCCAGGTAT  200
      |||| ||||||||||||||||||||  |||| ||||| ||||||||||||
seq2  ATAG-CTCCATGATCATGGGCTTTT--GCTA-GTTTC-AGGGCCAGGTAT  168

seq1  GATTTCCCTCTTGTGGAGTAGGTCTAAAATCCAATCAGAATGCAGCTGGT  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GATTTCCCTCTTGT-GAGTAGGTCTAAAATCCAATCAGAATGCAGCTGGT  217

seq1  TACCCCCATGGCAGCCACGTTGCTACTGCATCAGTGGGCACACCTTGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCATGGCAGCCACGTTGCTACTGCATCAGTGGGCACACCTTGCCC  267

seq1  TGCTGAGCTTGAATTTATTTTTCAGACTTGACAGCACAACTCACTTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCTTGAATTTATTTTTCAGACTTGACAGCACAACTCACTTTCCA  317

seq1  TTCTAACAAAATTAACTAATCCACACAGCTTTGCCTTGATCTTCTACTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACAAAATTAACTAATCCACACAGCTTTGCCTTGATCTTCTACTCC  367

seq1  GTATTTCACCCTGTTGCACAATGATATCCCTTCTTTGTTATATAAATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCACCCTGTTGCACAATGATATCCCTTCTTTGTTATATAAATAAT  417

seq1  GACACTTACTAGAGAATATCTAGAAAGTATAGGGAAAAAAATAGCCCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTACTAGAGAATATCTAGAAAGTATAGGGAAAAAAATAGCCCTAC  467

seq1  TGAGATAGTCACTCATTGACCATTAAATGATGGCGCTATGCAGGCTGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAGTCACTCATTGACCATTAAATGATGGCGCTATGCAGGCTGTTC  517

seq1  AGACAAAGTATGTTATTTTTCATCCCGCAAACCAATATGTGTGTGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAGTATGTTATTTTTCATCCCGCAAACCAATATGTGTGTGTGTGT  567

seq1  GTGTGTGTGTGTGTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGT  617

seq1  GTGTGAGTGTGTGTATGTAGGAGAAAGATAGTATGTGTATGTGAGAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTGTGTGTATGTAGGAGAAAGATAGTATGTGTATGTGAGAAAGA  667

seq1  GTATATGTAAGACTGTGTGAGAGTGCATGTATGAGTGTGTGTGCACGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGTAAGACTGTGTGAGAGTGCATGTATGAGTGTGTGTGCACGTGT  717

seq1  GTGCACATGTGTGTGTGAGAGAGTATGTGTATACATGTATGTATTTATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACATGTGTGTGTGAGAGAGTATGTGTATACATGTATGTATTTATGT  767

seq1  GCATTCATGTACTCCTATGTGCATACTGTTTTACAAATTGGACTCCCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCATGTACTCCTATGTGCATACTGTTTTACAAATTGGACTCCCTGT  817

seq1  ATGTGATCATTAATAACCCACTGTTTCAGCAACATGTCATCAACATTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATCATTAATAACCCACTGTTTCAGCAACATGTCATCAACATTTTC  867

seq1  TCTATCTTATTAAAATAGTCTTAAAACTTCTCAGCCTGTATGGCTTAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTTATTAAAATAGTCTTAAAACTTCTCAGCCTGTATGGCTTAACT  917

seq1  AATTACATGTCATAGGCGTCTGTCTATTTATGCCTTACGAGTCCCTCTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATGTCATAGGCGTCTGTCTATTTATGCCTTACGAGTCCCTCTGC  967

seq1  CAACAGTTCTTGAGAATAGAGACTTTTTTTTTGTCGCAATATGCACAATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTTCTTGAGAATAGAGACTTTTTTTTTGTCGCAATATGCACAATA  1017

seq1  GATCAGAGCATATGTCAAGGCCAACCATTCGGTAGGCACTCTTTTAAAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAGCATATGTCAAGGCCAACCATTCGGTAGGCACTCTTTTAAAAA  1067

seq1  TGTGATGAATTC  1112
      ||||||||||||
seq2  TGTGATGAATTC  1079