BAC Information

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BAC

Clone NameB6Ng01-110N16
Chromosome2 (Build37)
Map Location 147,482,513 - 147,589,810
singlet/doubletdoublet
Overlap geneLOC640914, A530006G24Rik
Upstream geneLOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1
Downstream geneLOC100043820, Foxa2, LOC383752, Sstr4, Thbd, Cd93, Nxt1, Gzf1, Napb, Cstl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110N16.bB6Ng01-110N16.g
ACCDH917361DH917362
length3571,128
definitionDH917361|Mus musculus domesticus DNA, BAC clone: B6Ng01-110N16, 5' end.DH917362|Mus musculus domesticus DNA, BAC clone: B6Ng01-110N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,482,513 - 147,482,869)(147,588,678 - 147,589,810)
sequence
gaattcagttggctgtgtgctaatagttacagattactcctcctttctga
cttcactgtaaagacagcctcactgcaacagtgccacctactgaaacagg
gagtgatgctctcttactgagatgcttatcttgatgctttccaaacacca
tgtaacttacagttaatgctaatcttcccagacacctggctagtaaaaag
gtgaaggctcgggtcaagtctttagggaagagcattaggggaaacatgat
gtggcaatcaaatgtgaaaaaggagcttctagcacagttctgggaatcta
ccacgccctttgaaaagtcagtgatatgagattctctccctctccctctc
cctctcc
gaattctcttggggatttaaaaaatatctacacaggccaagaaaccctat
gaatctgttcacatccaatacactaaaactccagctcaactgtatttagg
gtagcacatagaagccagggatatgggcactcagcctcattaataagcct
cattattaagttcttagataaactctcttcagtagcataaagaggcacca
aagaagatatcaaaaaaggcatacaggaagcatccctttcaaaggaccaa
cttttaatgtaagtcactctgagtgactagacttggccaaccagtgctgc
acaagaagggttatgtgggggcgatcaggcacttacctttcaggggaaaa
ctggctgaaagaaatggagcaggatcctgggaacatgagacaaagtgtgc
ccatacccaaatggaaagtttgctttcaaaatcaggtgagtcacatagag
tgatgggcagaagaaacccagatgacagctgtctccagaggcttcgggat
gcagggcatggaaatggcttcatgctgctctcactggactggcctggcct
catgaagaaaatattgccatgcttgcctgagatcttaccgccatggcttt
aatagccatgagtcaaggtgcagaatttattcaatattgaaaaggaaact
tcttggatttattcaggtgcatgccagatgttgtgtgagcattggcctca
caaagagagactcctagaaatcaactgcaggccctgggatcccatactct
tttcctcaattaacccttaggagcccatagaaaccaatcctaacaccatc
ggcagctcagaggggctggcagttactatatcacctcattgttgcaacac
acagacctatacccaaggcaaggcaaacacaagtttagacatagcatgta
tgtatgtctctatgtggaaagaactcagtcagtgtaccaggatatgcaat
tgatgacagtctgtatgttgaaattcacttatctactctaggtcttactg
gggaaacttatcaaacatggccacatttttagaagttccatagttgtgta
ttgatggactggaagctcaaggggttcaagagacatacatttggtttccc
atggcctcatgtttctactcaaacgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_147482513_147482869
seq2: B6Ng01-110N16.b_37_393

seq1  GAATTCAGTTGGCTGTGTGCTAATAGTTACTGATTACTCCTCCTTTCTGA  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAATTCAGTTGGCTGTGTGCTAATAGTTACAGATTACTCCTCCTTTCTGA  50

seq1  CTTCACTGTAAAGACAGCCTCACTGCAACAGTGCCACCTACTGAAACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTGTAAAGACAGCCTCACTGCAACAGTGCCACCTACTGAAACAGG  100

seq1  GAGTGATGCTCTCTTACTGAGATGCTTATCTTGATGCTTTCCAAACACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATGCTCTCTTACTGAGATGCTTATCTTGATGCTTTCCAAACACCA  150

seq1  TGTAACTTACAGTTAATGCTAATCTTCCCAGACACCTGGCTAGTAAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTTACAGTTAATGCTAATCTTCCCAGACACCTGGCTAGTAAAAAG  200

seq1  GTGAAGGCTCGGGTCAAGTCTTTAGGGAAGAGCATTAGGGGAAACATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGCTCGGGTCAAGTCTTTAGGGAAGAGCATTAGGGGAAACATGAT  250

seq1  GTGGCAATCAAATGTGAAAAAGGAGCTTCTAGCACAGTTCTGGGAATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAATCAAATGTGAAAAAGGAGCTTCTAGCACAGTTCTGGGAATCTA  300

seq1  CCACGCCCTTTGAAAAGTCAGTGATATGAGATTCTCTCCCTCTCCCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCCCTTTGAAAAGTCAGTGATATGAGATTCTCTCCCTCTCCCTCTC  350

seq1  CCTCTCC  357
      |||||||
seq2  CCTCTCC  357

seq1: chr2_147588678_147589810
seq2: B6Ng01-110N16.g_72_1199 (reverse)

seq1  CCTCGTTTGGGTAGAAACATGGAGCATTGGGAAACCAAATGTATGGTCTC  50
      ||||||||| |||||||||||  ||  ||||||||||||||||| |||||
seq2  CCTCGTTTGAGTAGAAACATGAGGCCATGGGAAACCAAATGTAT-GTCTC  49

seq1  -TGACTCCCTTGAGCTTCCAGTTCATTCAT-TACAACTATGGAAACTCTA  98
       |||  |||||||||||||||| |||  ||  ||||||||||||  ||||
seq2  TTGAACCCCTTGAGCTTCCAGTCCATCAATACACAACTATGGAACTTCTA  99

seq1  AAATATGTGGCCATGTTTGATAGTTTTCCCCAGTAAAGAACTTAGAAGGT  148
      ||| ||||||||||||||||||  ||||||||||||   || ||||  ||
seq2  AAA-ATGTGGCCATGTTTGATAAGTTTCCCCAGTAA--GACCTAGA--GT  144

seq1  AGATAAGTGAATTTCAACATACAGACTGTCATCAATTGCATATCCTGGTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGTGAATTTCAACATACAGACTGTCATCAATTGCATATCCTGGTA  194

seq1  CACTGACTGAGTTCTTTACAACATAGAGACATACATACCATGCTATGTCT  248
      ||||||||||||||||| | ||||||||||||||||| ||||||||||||
seq2  CACTGACTGAGTTCTTT-CCACATAGAGACATACATA-CATGCTATGTCT  242

seq1  -AACTTGTTGTTTGCCTTGCCTTGGGTATAGGTCTGTGTGTTGCAACAAT  297
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTG-TGTTTGCCTTGCCTTGGGTATAGGTCTGTGTGTTGCAACAAT  291

seq1  GAGTGAATATAGTAACTGCCAG-CCCTCTGAGCTGCCGATGGTGTTAGGA  346
      |||   |||||||||||||||| |||||||||||||||||||||||||||
seq2  GAGGTGATATAGTAACTGCCAGCCCCTCTGAGCTGCCGATGGTGTTAGGA  341

seq1  TTGGTTTCTATGGGCTCCTAAGGGTTAATTGAGGAAAAGAGTATGGGATC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCTATGGGCTCCTAAGGGTTAATTGAGGAAAAGAGTATGGGATC  391

seq1  CCAGGGCCTGCAGTTGATTTCTAGGAGTCTCTCTTTGTGAGGCCAATGCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCCTGCAGTTGATTTCTAGGAGTCTCTCTTTGTGAGGCCAATGCT  441

seq1  CACACAACATCTGGCATGCACCTGAATAAATCCAAGAAGTTTCCTTTTCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAACATCTGGCATGCACCTGAATAAATCCAAGAAGTTTCCTTTTCA  491

seq1  ATATTGAATAAATTCTGCACCTTGACTCATGGCTATTAAAGCCATGGCGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAATAAATTCTGCACCTTGACTCATGGCTATTAAAGCCATGGCGG  541

seq1  TAAGATCTCAGGCAAGCATGGCAATATTTTCTTCATGAGGCCAGGCCAGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCTCAGGCAAGCATGGCAATATTTTCTTCATGAGGCCAGGCCAGT  591

seq1  CCAGTGAGAGCAGCATGAAGCCATTTCCATGCCCTGCATCCCGAAGCCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAGAGCAGCATGAAGCCATTTCCATGCCCTGCATCCCGAAGCCTC  641

seq1  TGGAGACAGCTGTCATCTGGGTTTCTTCTGCCCATCACTCTATGTGACTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAGCTGTCATCTGGGTTTCTTCTGCCCATCACTCTATGTGACTC  691

seq1  ACCTGATTTTGAAAGCAAACTTTCCATTTGGGTATGGGCACACTTTGTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATTTTGAAAGCAAACTTTCCATTTGGGTATGGGCACACTTTGTCT  741

seq1  CATGTTCCCAGGATCCTGCTCCATTTCTTTCAGCCAGTTTTCCCCTGAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCCCAGGATCCTGCTCCATTTCTTTCAGCCAGTTTTCCCCTGAAA  791

seq1  GGTAAGTGCCTGATCGCCCCCACATAACCCTTCTTGTGCAGCACTGGTTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTGCCTGATCGCCCCCACATAACCCTTCTTGTGCAGCACTGGTTG  841

seq1  GCCAAGTCTAGTCACTCAGAGTGACTTACATTAAAAGTTGGTCCTTTGAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTCTAGTCACTCAGAGTGACTTACATTAAAAGTTGGTCCTTTGAA  891

seq1  AGGGATGCTTCCTGTATGCCTTTTTTGATATCTTCTTTGGTGCCTCTTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGCTTCCTGTATGCCTTTTTTGATATCTTCTTTGGTGCCTCTTTA  941

seq1  TGCTACTGAAGAGAGTTTATCTAAGAACTTAATAATGAGGCTTATTAATG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTGAAGAGAGTTTATCTAAGAACTTAATAATGAGGCTTATTAATG  991

seq1  AGGCTGAGTGCCCATATCCCTGGCTTCTATGTGCTACCCTAAATACAGTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGTGCCCATATCCCTGGCTTCTATGTGCTACCCTAAATACAGTT  1041

seq1  GAGCTGGAGTTTTAGTGTATTGGATGTGAACAGATTCATAGGGTTTCTTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGAGTTTTAGTGTATTGGATGTGAACAGATTCATAGGGTTTCTTG  1091

seq1  GCCTGTGTAGATATTTTTTAAATCCCCAAGAGAATTC  1133
      |||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTAGATATTTTTTAAATCCCCAAGAGAATTC  1128