BAC Information

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BAC

Clone NameB6Ng01-111A19
Chromosome2 (Build37)
Map Location 145,716,488 - 145,917,689
singlet/doubletdoublet
Overlap geneNat5, Crnkl1, 4930529M08Rik, LOC100043563
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2
Downstream geneInsm1, A230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111A19.bB6Ng01-111A19.g
ACCDH917499DH917500
length1,112940
definitionDH917499|Mus musculus domesticus DNA, BAC clone: B6Ng01-111A19, 5' end.DH917500|Mus musculus domesticus DNA, BAC clone: B6Ng01-111A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,916,562 - 145,917,689)(145,716,488 - 145,717,422)
sequence
gaattccttggcttgcaacctttcccttcttgcatctacaagaacatctt
ccactctgagggtaggtgtttgccaatgatcttggtctccttatcaaatg
cccttgccagcttatttcccttaggacacttcaggatgccaatccagcac
tgattaagatggctccctggagtcaatgggaacaaggtcctgtttctttg
cttcttcatgtgtggcatctattctcaaagtcagcctacatccacagtag
ctcttggggctccctccacctgacatgttactattatggtcagaaggaag
gaaatgcagtggtacaaggcagaattcctcaagctaattatttcaaatag
agttcatgtaagccaagggggaaaaaaatgatgtgccaactggacagcac
ccaggaactagagcagttcatgagaacaatggtcagagatagcatttgaa
gaaaacacagatgagacataaaaaaaaacaacttagtggaatgcagttta
gtcaagtgcctactcagttggtttgagagtctcctgaaccaacctttcct
atgactgaacacacattggtttaggttggcccactgcagaagcctattcc
taatcaatggcttctcagcaacgtcatctaacagcaggaaagacaatgta
ctaaagaccctatcaggcagccctgtgtaacatttctgcttatattagca
gaactcattgccactgccacatgtctttgcaaaggaagtcagacaacacc
gatttttatgagacatggtgtgattgtttttgcctccctaagaaccacat
ggccctgagttctgtctctaaacacaaagtacaaatgaatctagggagac
agtggcacagcagctgatgaaggaagcagggatgaggatgaaagaaaaga
cttaggaatcaggattcagggggaaaatgcagacaaacttcacaaagtct
acaaaagggatgcttaacagatgatgagaactgaaagaatagttgtgtca
tcaggactagcaaggtggggcagaggtctagggagaggtactggggagag
gtggacaagtaggattgtcacttgggagctatgccacatggctcggctgt
cataacgatgtt
gaattcattgtgaatgaaccatcaaccacccaccctgtctgtcacaaaga
ctccgaggcaactgctgcagttttaagtgtgtaattttaagtaattttga
ttttgcttctcagtgttgggatgggatccaggtccttgtgttctctaggc
aagcactctgcctctgagttgggacacccagccctaggctacatcttgaa
atcacctggggctgcctagaccatcagtggtcttcaagtggtacccaagt
gtcccggtgattaacacctcaggatgctcccaccaagagctaccaggcac
aattcttaaagtgacagcaccgtgggcatgtagcctcttgcttggccact
aacgtctgaatagtgcacactccttatttcgctcaagtactttgggcccc
tttatccaacataaacataaagctgattacaaattttctagaagccacat
ttaaaaaaagaaaaaatcctttaatcccagcacttgggaggcagaggcag
gcagatttctgagttcagttcgaggccagcctggtctacaaagtgagttc
ctgtacagccaaggctacacaaagaaaccctgtctcgaaaaaccaagaaa
gaaagaaagagagagagagtgagagagaaaaaaaagactagcagttcaaa
ttaattttatagatgttatttaacccacgagaatccaaatattatatttt
caacaatataaaacattaaataggtattttacattcttttaaaatataag
tcttcaaaaatcttatgtttattttatactcaatagcacatctaattaca
catgggactttatctcaaatcatctctagtctctgtgcctaagtggccac
caaactggataatgaagttataacgaattagcagaaatgattttaagtgt
gtgtgtgtgtgtgagagagagagagagaagaagagagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_145916562_145917689
seq2: B6Ng01-111A19.b_48_1159 (reverse)

seq1  AACATCGTTATGACAGCAGAG-CATGTGGCCATAGCTCCCAAGTGACAAT  49
      ||||||||||||||||| ||| ||||||| ||||||||||||||||||||
seq2  AACATCGTTATGACAGCCGAGCCATGTGG-CATAGCTCCCAAGTGACAAT  49

seq1  CCCCTACTTGTCCCACCTCTCCCATGTACCCTCTCCCTAGACCCTCTGGC  99
        ||||||||| |||||||||||  ||| |||||||||||| ||||||  
seq2  --CCTACTTGT-CCACCTCTCCCCAGTA-CCTCTCCCTAGA-CCTCTG--  92

seq1  ACCCCACCTTGCTAGTTCCTGGATGACAC-ACTATTCTTTTCAGTTCTCA  148
       |||||||||||||| |||| |||||||| ||||||| ||||||||||||
seq2  -CCCCACCTTGCTAG-TCCT-GATGACACAACTATTC-TTTCAGTTCTCA  138

seq1  TCATTCTGTGTAAGCATCCCTTTTGTAGACTTTGTGAAGTTTGTCCTGCA  198
      ||| ||||| |||||||||||||||||||||||||||||||||| |||||
seq2  TCA-TCTGT-TAAGCATCCCTTTTGTAGACTTTGTGAAGTTTGT-CTGCA  185

seq1  TTTTTCCCCCTGAATCCTGATTCCTAAGTCTTTTCTTTCATCCTCATCCC  248
       |||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  -TTTTCCCCCTGAATCCTGATTCCTAAGTCTTTTCTTTCATCCTCAT-CC  233

seq1  CTGCTTCCTTCATCAGCTGCTGTGCCACTTGTCTCCCTAGATTCATTTGT  298
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTGCTTCCTTCATCAGCTGCTGTGCCAC-TGTCTCCCTAGATTCATTTGT  282

seq1  ACTTTGTGTTTAGAGACAGAACTCAGGGCCATGTGGTTCTTAGGGAGGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTGTTTAGAGACAGAACTCAGGGCCATGTGGTTCTTAGGGAGGCA  332

seq1  AAAACAATCACACCATGTCTCATAAAAATCGGTGTTGTCTGACTTCCTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATCACACCATGTCTCATAAAAATCGGTGTTGTCTGACTTCCTTT  382

seq1  GCAAAGACATGTGGCAGTGGCAATGAGTTCTGCTAATATAAGCAGAAATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGACATGTGGCAGTGGCAATGAGTTCTGCTAATATAAGCAGAAATG  432

seq1  TTACACAGGGCTGCCTGATAGGGTCTTTAGTACATTGTCTTTCCTGCTGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAGGGCTGCCTGATAGGGTCTTTAGTACATTGTCTTTCCTGCTGT  482

seq1  TAGATGACGTTGCTGAGAAGCCATTGATTAGGAATAGGCTTCTGCAGTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGACGTTGCTGAGAAGCCATTGATTAGGAATAGGCTTCTGCAGTGG  532

seq1  GCCAACCTAAACCAATGTGTGTTCAGTCATAGGAAAGGTTGGTTCAGGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCTAAACCAATGTGTGTTCAGTCATAGGAAAGGTTGGTTCAGGAG  582

seq1  ACTCTCAAACCAACTGAGTAGGCACTTGACTAAACTGCATTCCACTAAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAAACCAACTGAGTAGGCACTTGACTAAACTGCATTCCACTAAGT  632

seq1  TGTTTTTTTTTATGTCTCATCTGTGTTTTCTTCAAATGCTATCTCTGACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTTTATGTCTCATCTGTGTTTTCTTCAAATGCTATCTCTGACC  682

seq1  ATTGTTCTCATGAACTGCTCTAGTTCCTGGGTGCTGTCCAGTTGGCACAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCTCATGAACTGCTCTAGTTCCTGGGTGCTGTCCAGTTGGCACAT  732

seq1  CATTTTTTTCCCCCTTGGCTTACATGAACTCTATTTGAAATAATTAGCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTCCCCCTTGGCTTACATGAACTCTATTTGAAATAATTAGCTT  782

seq1  GAGGAATTCTGCCTTGTACCACTGCATTTCCTTCCTTCTGACCATAATAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATTCTGCCTTGTACCACTGCATTTCCTTCCTTCTGACCATAATAG  832

seq1  TAACATGTCAGGTGGAGGGAGCCCCAAGAGCTACTGTGGATGTAGGCTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGTCAGGTGGAGGGAGCCCCAAGAGCTACTGTGGATGTAGGCTGA  882

seq1  CTTTGAGAATAGATGCCACACATGAAGAAGCAAAGAAACAGGACCTTGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGAATAGATGCCACACATGAAGAAGCAAAGAAACAGGACCTTGTT  932

seq1  CCCATTGACTCCAGGGAGCCATCTTAATCAGTGCTGGATTGGCATCCTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGACTCCAGGGAGCCATCTTAATCAGTGCTGGATTGGCATCCTGA  982

seq1  AGTGTCCTAAGGGAAATAAGCTGGCAAGGGCATTTGATAAGGAGACCAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCTAAGGGAAATAAGCTGGCAAGGGCATTTGATAAGGAGACCAAG  1032

seq1  ATCATTGGCAAACACCTACCCTCAGAGTGGAAGATGTTCTTGTAGATGCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGGCAAACACCTACCCTCAGAGTGGAAGATGTTCTTGTAGATGCA  1082

seq1  AGAAGGGAAAGGTTGCAAGCCAAGGAATTC  1128
      ||||||||||||||||||||||||||||||
seq2  AGAAGGGAAAGGTTGCAAGCCAAGGAATTC  1112

seq1: chr2_145716488_145717422
seq2: B6Ng01-111A19.g_71_1010

seq1  GAATTCATTGTGAATGAACCATCAACCACCCACCCTGTCTGTCACAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGAATGAACCATCAACCACCCACCCTGTCTGTCACAAAGA  50

seq1  CTCCGAGGCAACTGCTGCAGTTTTAAGTGTGTAATTTTAAGTAATTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGAGGCAACTGCTGCAGTTTTAAGTGTGTAATTTTAAGTAATTTTGA  100

seq1  TTTTGCTTCTCAGTGTTGGGATGGGATCCAGGTCCTTGTGTTCTCTAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTCTCAGTGTTGGGATGGGATCCAGGTCCTTGTGTTCTCTAGGC  150

seq1  AAGCACTCTGCCTCTGAGTTGGGACACCCAGCCCTAGGCTACATCTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTCTGCCTCTGAGTTGGGACACCCAGCCCTAGGCTACATCTTGAA  200

seq1  ATCACCTGGGGCTGCCTAGACCATCAGTGGTCTTCAAGTGGTACCCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTGGGGCTGCCTAGACCATCAGTGGTCTTCAAGTGGTACCCAAGT  250

seq1  GTCCCGGTGATTAACACCTCAGGATGCTCCCACCAAGAGCTACCAGGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGGTGATTAACACCTCAGGATGCTCCCACCAAGAGCTACCAGGCAC  300

seq1  AATTCTTAAAGTGACAGCACCGTGGGCATGTAGCCTCTTGCTTGGCCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTAAAGTGACAGCACCGTGGGCATGTAGCCTCTTGCTTGGCCACT  350

seq1  AACGTCTGAATAGTGCACACTCCTTATTTCGCTCAAGTACTTTGGGCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTCTGAATAGTGCACACTCCTTATTTCGCTCAAGTACTTTGGGCCCC  400

seq1  TTTATCCAACATAAACATAAAGCTGATTACAAATTTTCTAGAAGCCACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCAACATAAACATAAAGCTGATTACAAATTTTCTAGAAGCCACAT  450

seq1  TTAAAAAAAGAAAAAATCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAGAAAAAATCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAG  500

seq1  GCAGATTTCTGAGTTCAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTTCTGAGTTCAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTC  550

seq1  CTGTACAGCCAAGGCTACACAAAGAAACCCTGTCTCGAAAAACCAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACAGCCAAGGCTACACAAAGAAACCCTGTCTCGAAAAACCAAGAAA  600

seq1  GAAAGAAAGAGAGAGAGAGTGAGAGAG-AAAAAAAGACTAGCAGTTCAAA  649
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAAAGAAAGAGAGAGAGAGTGAGAGAGAAAAAAAAGACTAGCAGTTCAAA  650

seq1  TTAATTTTATAGATGTTATTTAACCCACGAGAATCCAAATATTATA-TTT  698
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTAATTTTATAGATGTTATTTAACCCACGAGAATCCAAATATTATATTTT  700

seq1  CAACAATATAAAACATTAAATAGGTATTTTACATTCTTTTAAAAATATAA  748
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAACAATATAAAACATTAAATAGGTATTTTACATTCTTTT-AAAATATAA  749

seq1  GTCTTCAAAAATCTTATGTTTATTTTATACTCAATAGCACATCTAATTAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAAAAATCTTATGTTTATTTTATACTCAATAGCACATCTAATTAC  799

seq1  ACAT-GGACTTTATCTCAAATCATCTCTAGTCTCTGTGCCT-AGTGGCCA  846
      |||| |||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACATGGGACTTTATCTCAAATCATCTCTAGTCTCTGTGCCTAAGTGGCCA  849

seq1  CCAAACTGGATAATGAAGTTATAACGAATTAGCAGAAATGATTTTAAGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTGGATAATGAAGTTATAACGAATTAGCAGAAATGATTTTAAGTG  899

seq1  TGTGTGTGTGTGTGAGAGAGAGAGAGAGA--GAGAGAGAGA  935
      |||||||||||||||||||||||||||||   ||||||| |
seq2  TGTGTGTGTGTGTGAGAGAGAGAGAGAGAAGAAGAGAGAAA  940