BAC Information

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BAC

Clone NameB6Ng01-111B21
Chromosome2 (Build37)
Map Location 172,341,983 - 172,471,236
singlet/doubletdoublet
Overlap geneTcfap2c, LOC100043750
Upstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957
Downstream geneBmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111B21.bB6Ng01-111B21.g
ACCDH917551DH917552
length9761,084
definitionDH917551|Mus musculus domesticus DNA, BAC clone: B6Ng01-111B21, 5' end.DH917552|Mus musculus domesticus DNA, BAC clone: B6Ng01-111B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,470,264 - 172,471,236)(172,341,983 - 172,343,094)
sequence
gaattcacatagatttacctgcctctgcctcccaggcgctgagatgaacg
ggcgattaaagccaccacgctgagcctactctcccttttccaccatcttg
tctccttcctctccccgtgttgtgtgcattgttggttttagcatcattct
aaaaaaacgctggagtctgagaaggaagtgatacatttatttgcaatagc
ttcctggcctgtgccaggatagtcttacagaccgtcaatggtacggaacc
ttcgaagattctagctacgaccccccccaaacacaggaagcacctggtgc
tgatgggaggtaccacctgggtgaccactgtcacagtgtcacaggctgca
cttgggtaatacaagcgttcccactgctgggggagccccctcatctcccc
aggaatgctccagcctccctccctgctgcaggacacctcaaacacttggc
aaggctcatagggacggaaaataggacctgcaacctgaaagatgtgggca
cgttggctgctgacacctcaaaggctagggactggcagctaggtcagagc
cccacaagagccttggacactgacccatgccggtgtcttcatatctggac
tggccattctggggcttccttcaccaatatgttacctggagccattcctt
cccctctctggacctagggctgagagttcccctgactaacatcccgatag
gttcctgagtaggtgtctgatcctgaattgagacccaggactcaagttgg
aagagttttactccccccacaaagactgggccccgacctgggcgtgaaag
ggcccatcaggcctgatcaccaagctcaggggaagtgcagagagtcgcag
atccagggcctgggtcaagataaccctgtcaccttgggatgcttcagcct
gtgattcctgtgcccagaagccacagtgacaggtctgttctgggagccag
ggaggcaggcgggggggggggggggt
gaattcaggggtctggtgtagtaggaaggcccttgctagtgatggtcgcc
tttgacaagttgtgcaatctttgcagacccctcccccccggtggtgactc
agcgctaatggcggctagagcttctttaatgcagggctgagcaggtgtgc
agcagcttggctttatctcctgacctaaaagcagaaaaactggaacagct
aggggacctttgaggggagaggtcaccagcccatcagggaactagcacac
aaaggagatttctgggcttggaaatgggagtaggctctggagccaggaag
acaaaaccttggcaggcggagatttcgaataacagtccgggtccttgaaa
tgctaaacgttcctgtcctttaccctgctgggtgtcaaagaaaaaaaaca
acatttactggtactggggtcgcctataaaaacattagaggcattaaagc
aaacaaaggggaggtaaaaaagacagcctcctgaagaggggttcggcccc
tagcccagcccatggccccagctggcgggaggaagaagcagttcacagcc
ttggctacttcgtgagtctgaggccagcctgagctacacaaggctgggcc
aggcaggctgggcatagggacacccaccttttacttctggcactggggag
gccaagacattgatctctgagtttgaggccagcctgtctacacagccagt
tctccagcaatctaggctacttagtgagaccttgtcaagaaaaagagaaa
agaaaagagaaaacccacgcaaactccctagaaatatttgtctcccagag
gacaaatcacctcgggttgagagccactgtgtgtaacaatacatatgggc
tggtcctatatgtatcaggcgagaaacactataatatcacatcatatggt
gatatgtgactcaaatgcatcaggggcccttggtctttcagagatgacta
catctgtagcgtaatactagcatattttctctttttttctctaactcatt
ctgctcttctgtagctgctgtagtctgagcctgtagctgcctgagctcat
agactctgtagcttgcctgcagtctcttggaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_172470264_172471236
seq2: B6Ng01-111B21.b_50_1025 (reverse)

seq1  -ACCCCCCCCCCCCCCGCCTGCCTCCCTGGCTCCCAGAACAGACCTGTCA  49
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCCCCCCCCCCGCCTGCCTCCCTGGCTCCCAGAACAGACCTGTCA  50

seq1  CTGTGGCTTCTGGGCACAGGAATCACAGGCTGAAGCATCCCAAGGTGACA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTTCTGGGCACAGGAATCACAGGCTGAAGCATCCCAAGGTGACA  100

seq1  GGGTTATCTTGACCCAGG-CCTGGATCTGCGACTCTCTGCACTT-CCCTG  147
      |||||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  GGGTTATCTTGACCCAGGCCCTGGATCTGCGACTCTCTGCACTTCCCCTG  150

seq1  AGCTTGGTGATCAGGCCTGATGGGCCCTTTCACGCCCAGGTCGGGGCCCA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGTGATCAGGCCTGATGGGCCCTTTCACGCCCAGGTCGGGGCCCA  200

seq1  GTCTTTGTGGGGGGAGTAAAACTCTTCCAACTTGAGTCCTGGGTCTCAAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTGGGGGGAGTAAAACTCTTCCAACTTGAGTCCTGGGTCTCAAT  250

seq1  TCAGGATCAGACACCTACTCAGGAACCTATCGGGATGTTAGTCAGGGGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATCAGACACCTACTCAGGAACCTATCGGGATGTTAGTCAGGGGAA  300

seq1  CTCTCAGCCCTAGGTCCAGAGAGGGGAAGGAATGGCTCCAGGTAACATAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGCCCTAGGTCCAGAGAGGGGAAGGAATGGCTCCAGGTAACATAT  350

seq1  TGGTGAAGGAAGCCCCAGAATGGCCAGTCCAGATATGAAGACACCGGCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAGGAAGCCCCAGAATGGCCAGTCCAGATATGAAGACACCGGCAT  400

seq1  GGGTCAGTGTCCAAGGCTCTTGTGGGGCTCTGACCTAGCTGCCAGTCCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGTGTCCAAGGCTCTTGTGGGGCTCTGACCTAGCTGCCAGTCCCT  450

seq1  AGCCTTTGAGGTGTCAGCAGCCAACGTGCCCACATCTTTCAGGTTGCAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTGAGGTGTCAGCAGCCAACGTGCCCACATCTTTCAGGTTGCAGG  500

seq1  TCCTATTTTCCGTCCCTATGAGCCTTGCCAAGTGTTTGAGGTGTCCTGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTTCCGTCCCTATGAGCCTTGCCAAGTGTTTGAGGTGTCCTGCA  550

seq1  GCAGGGAGGGAGGCTGGAGCATTCCTGGGGAGATGAGGGGGCTCCCCCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAGGGAGGCTGGAGCATTCCTGGGGAGATGAGGGGGCTCCCCCAG  600

seq1  CAGTGGGAACGCTTGTATTACCCAAGTGCAGCCTGTGACACTGTGACAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGAACGCTTGTATTACCCAAGTGCAGCCTGTGACACTGTGACAGT  650

seq1  GGTCACCCAGGTGGTACCTCCCATCAGCACCAGGTGCTTCCTGTGTTTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCCAGGTGGTACCTCCCATCAGCACCAGGTGCTTCCTGTGTTTGG  700

seq1  GGGGGGTCGTAGCTAGAATCTTCGAAGGTTCCGTACCATTGACGGTCTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTCGTAGCTAGAATCTTCGAAGGTTCCGTACCATTGACGGTCTGT  750

seq1  AAGACTATCCTGGCACAGGCCAGGAAGCTATTGCAAATAAATGTATCACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTATCCTGGCACAGGCCAGGAAGCTATTGCAAATAAATGTATCACT  800

seq1  TCCTTCTCAGACTCCAGCGTTTTTTTAGAATGATGCTAAAACCAACAATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCAGACTCCAGCGTTTTTTTAGAATGATGCTAAAACCAACAATG  850

seq1  CACACAACACGGGGAGAGGAAGGAGACAAGATGGTGGAAAAGGGAGAGTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAACACGGGGAGAGGAAGGAGACAAGATGGTGGAAAAGGGAGAGTA  900

seq1  GGCTCAGCGTGGTGGCTTTAATCGCCCGTTCATCTCAGCGCCTGGGAGGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGCGTGGTGGCTTTAATCGCCCGTTCATCTCAGCGCCTGGGAGGC  950

seq1  AGAGGCAGGTAAATCTATGTGAATTC  973
      ||||||||||||||||||||||||||
seq2  AGAGGCAGGTAAATCTATGTGAATTC  976

seq1: chr2_172341983_172343094
seq2: B6Ng01-111B21.g_68_1151

seq1  GAATTCAGGGGTCTGGTGTAGTAGGAAGGCCCTTGCTAGTGATGGTCGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGGTCTGGTGTAGTAGGAAGGCCCTTGCTAGTGATGGTCGCC  50

seq1  TTTGACAAGTTGTGCAATCTTTGCAGACCCCTCCCCCCCGGTGGTGACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAAGTTGTGCAATCTTTGCAGACCCCTCCCCCCCGGTGGTGACTC  100

seq1  AGCGCTAATGGCGGCTAGAGCTTCTTTAATGCAGGGCTGAGCAGGTGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTAATGGCGGCTAGAGCTTCTTTAATGCAGGGCTGAGCAGGTGTGC  150

seq1  AGCAGCTTGGCTTTATCTCCTGACCTAAAAGCAGAAAAACTGGAACAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTTGGCTTTATCTCCTGACCTAAAAGCAGAAAAACTGGAACAGCT  200

seq1  AGGGGACCTTTGAGGGGAGAGGTCACCAGCCCATCAGGGAACTAGCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACCTTTGAGGGGAGAGGTCACCAGCCCATCAGGGAACTAGCACAC  250

seq1  AAAGGAGATTTCTGGGCTTGGAAATGGGAGTAGGCTCTGGAGCCAGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGATTTCTGGGCTTGGAAATGGGAGTAGGCTCTGGAGCCAGGAAG  300

seq1  ACAAAACCTTGGCAGGCGGAGATTTCGAATAACAGTCCGGGTCCTTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCTTGGCAGGCGGAGATTTCGAATAACAGTCCGGGTCCTTGAAA  350

seq1  TGCTAAACGTTCCTGTCCTTTACCCTGCTGGGTGTCAAAGAAAAAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAACGTTCCTGTCCTTTACCCTGCTGGGTGTCAAAGAAAAAAAACA  400

seq1  ACATTTACTGGTACTGGGGTCGCCTATAAAAACATTAGAGGCATTAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTACTGGTACTGGGGTCGCCTATAAAAACATTAGAGGCATTAAAGC  450

seq1  AAACAAAGGGGAGGTAAAAAAGACAGCCTCCTGAAGAGGGGTTCGGCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGGGGAGGTAAAAAAGACAGCCTCCTGAAGAGGGGTTCGGCCCC  500

seq1  TAGCCCAGCCCATGGCCCCAGCTGGCGGGAGGAAGAAGCAGTTCACAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCAGCCCATGGCCCCAGCTGGCGGGAGGAAGAAGCAGTTCACAGCC  550

seq1  TTGGCTACTTCGTGAGTCTGAGGCCAGCCTGAGCTACACAAGGCTGGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTACTTCGTGAGTCTGAGGCCAGCCTGAGCTACACAAGGCTGGGCC  600

seq1  AGGCAGGCTGGGCATAGGGACACCCACCTTTTACTTCTGGCACTGGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCTGGGCATAGGGACACCCACCTTTTACTTCTGGCACTGGGGAG  650

seq1  GCCAAGACATTGATCTCTGAGTTTGAGGCCAGCCTGTCTACACAGCCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGACATTGATCTCTGAGTTTGAGGCCAGCCTGTCTACACAGCCAGT  700

seq1  TCTCCAGCAATCTAGGCTACTTAGTGAGACCTTGTCAAGAAAAAGAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCAATCTAGGCTACTTAGTGAGACCTTGTCAAGAAAAAGAGAAA  750

seq1  AGAAAAGAGAAAACCCACGCAAACTCCCTAGAAATATTTGTCTCCCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAGAAAACCCACGCAAACTCCCTAGAAATATTTGTCTCCCAGAG  800

seq1  GACAAATCACCTC-GGTTGAGAGCCACTGTGTGTAACAATACAATAT-GG  848
      ||||||||||||| |||||||||||||||||||||||||||| |||| ||
seq2  GACAAATCACCTCGGGTTGAGAGCCACTGTGTGTAACAATAC-ATATGGG  849

seq1  CTGGTCCTATATGTATCAGGGCGAGAAACACTAT-ATATCAACATCATAT  897
      |||||||||||||||||| ||||||||||||||| ||||| |||||||||
seq2  CTGGTCCTATATGTATCA-GGCGAGAAACACTATAATATC-ACATCATAT  897

seq1  GGTGATATTGTGACCCAAATGCACCAGGGGCCCCTTGGGTCCTTTCAGAA  947
      ||||||| |||||| |||||||| |||||| |||||||   ||||||| |
seq2  GGTGATA-TGTGACTCAAATGCATCAGGGG-CCCTTGG--TCTTTCAG-A  942

seq1  GATGACTACATCTTGTAGCGGTTAAATAACTAGCATAATTTTCTTCCTTT  997
      |||||||||||| |||||||  |||   |||||||| |||||||  ||||
seq2  GATGACTACATC-TGTAGCG--TAA--TACTAGCAT-ATTTTCT--CTTT  984

seq1  TTTTCTCCTACCCTCATCCTGCTCTTCTGTAGTCTGCCTGTAGTTCTGTA  1047
      |||||||  |  ||||| |||||||||||||| ||| |||||| |||| |
seq2  TTTTCTCTAA--CTCATTCTGCTCTTCTGTAG-CTG-CTGTAG-TCTG-A  1028

seq1  GCCTGTAGTCTGCCTGTAGTCCTCCTATAGTACTCCTGTAGTCTGCCTGC  1097
      |||||||| ||||||| ||  |||  |||| ||| ||||||  |||||||
seq2  GCCTGTAG-CTGCCTG-AG--CTC--ATAG-ACT-CTGTAGCTTGCCTGC  1070

seq1  AGTCCTCTTGTAATC  1112
      ||| |||||| ||||
seq2  AGT-CTCTTGGAATC  1084