BAC Information

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BAC

Clone NameB6Ng01-111D03
Chromosome2 (Build37)
Map Location 142,867,132 - 143,019,537
singlet/doubletdoublet
Overlap geneSnrpb2, Otor, LOC668915
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneLOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111D03.bB6Ng01-111D03.g
ACCDH917607DH917608
length1,1961,089
definitionDH917607|Mus musculus domesticus DNA, BAC clone: B6Ng01-111D03, 5' end.DH917608|Mus musculus domesticus DNA, BAC clone: B6Ng01-111D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,018,329 - 143,019,537)(142,867,132 - 142,868,247)
sequence
gaattctcagactatttatattgcttacaatgaagacatcccaccttcca
acatcccagagatattatgtgctatatataatcctgtctggtaaccccaa
gaaccaccttatgatcctgtttaggttcttagcaacccataggaacacag
tagcttttaaatcatagaaatggtatatttgactcttgcaaaggcaacta
aagaccatacacaccctctggtgcacctcactttcttccttactcttctt
ctttcttaactctcttcgaatccatactatctttattaaactccaaccct
ccttcatacttgctactctgaaattcttttctgagtggaagccatgaatc
ttggcttggcctgaggtaagattgctaacagattagatggcctcctcagg
ctactgtagaggacatagtaaagctatgcccctgcctctatcactttact
gctgacagaggaacaccttctgtgcagtccattttgaagtcctcagctaa
attaagagatttggtcttcccaggacgaagctgccacacaaagtcccctt
catgttcgccatgctttgttatccagcgtcattatccttgacatcggatg
gcccaggccagccttcctttttgtctacttgcccctttgtgggtggctca
caaattacacgtccctcctgcggttcctccctccttcaccttcagccttt
tctctcaaaccgttgctgagctggttgcccctctccctatctagcctgat
cccagacttgcctttgtctccactcctctcagaagggacaagtttcctct
tcctcctcccccacactacatgcatgaagctaaaacaaacctctgcatag
aaagcaggattggctttcagagcagccagagagacgctgcttgatcttta
tgttttgttttttaagtggtacctactggctccagtagacagagaaagag
attcattggctgctctgattcctgcaggcaacgattgatattctctcttc
tctgatgtctggtgacaggatgctttaatatgattggagggtcatagcac
tgggtctttgatatgcttgcaagggctgtggctttgtggctattttattt
ccacacggaaactatggaggtagatttattatcctgtttctaggctagga
atacctggagtggattaagccactgtcgtgtggtgtctcttcaggt
gaattctggttactattacccccaccctttcgtatcttccagctttacaa
gtccttttctcaccttcatgtgttttgtttttgtttgtttgtttttagtg
acctagtgagtttaactagggtcatatgtgttactgtaggtttgagatta
tcctctgaagcttggtggctcagcagtggatagatacacaactgaagata
aggtctgcccatccccagaatgtatcagtatccaatagttcagtagggag
gtgcccatgtgctcctccccaatccatgcttcatcaccgacaggcccagt
caacactcacattgttcacaaagaaataaaaatgattctatttagtgccc
agtcaacttgcttaagtcagatagtccagttgacctttagagtaatggcc
agcaaattgactcatccaatggaagaaagccaagtgtcactgttcaaaaa
acaattcctatttcattgcactttctctcttttttttgtcataaaacctg
tatcatctttgtttcattgataggtcatgcaaaatctcctttataagggt
caatctccttataagaattagtcaatattggaattgattctttgacatct
cttacaataaaaagaaaagcaagccttcaatgcagtccatgttctaacat
ctaagatagaagctaatgaggaagctgaggatgaagttctgttaataaag
tgctcacatagcacaccggggaggtttgagttacacatcttatataagct
ttcacatctgagaaatgggaacaatgagattttatttttaccattgttac
tatttcatctagaaaaagactgagttgctgataatgacatgaaatgagtt
ttgagctatgcagtaaaattagcttttagattggtaaccaatataattgt
ttggctgatgaataccgtaaacattacatgaaaaagtaatgtttaaataa
ggtagatatgtatttttaccaaagactcagtatcacattacagaaaggta
atgctttccctttatgatgtgatatgggtaaagcaggattgtacgtcatg
acgtatgtagtaccctcactacagtttgattcttatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143018329_143019537
seq2: B6Ng01-111D03.b_43_1238 (reverse)

seq1  ACCTGGAAGAAGACACCACA-GACAGGTGGCTTAATCCCACTCAGGTTAT  49
      |||| |||| |||||||||| |||| |||||||||| ||||||  | |||
seq2  ACCT-GAAG-AGACACCACACGACA-GTGGCTTAAT-CCACTCCAGGTAT  46

seq1  TTCTTTAGCTATGAAACAGGAATAATAAATCTTACTTCAATAGGTTTCTG  99
      | |  ||||   |||||||| |||||||||| ||| || ||| ||||| |
seq2  TCC--TAGCCTAGAAACAGG-ATAATAAATC-TACCTCCATA-GTTTCCG  91

seq1  TGT-GAAAT-AAATAAGCACAAAG-CACAGCCCTTGGCAAGCATATCAAA  146
      ||| ||||| |||||  ||||||| |||||||||| ||||||||||||||
seq2  TGTGGAAATAAAATAGCCACAAAGCCACAGCCCTT-GCAAGCATATCAAA  140

seq1  GACCCAGTGCTATGACACTCAATTCATATTTAAAGCATCCTTGTCA-CAG  195
      |||||||||||||||| ||| | ||||| ||||||||||| ||||| |||
seq2  GACCCAGTGCTATGACCCTCCAATCATA-TTAAAGCATCC-TGTCACCAG  188

seq1  ACATCAGAGAGGAGAGAAATATCAATCGTTTGCCTGCAGGAATCAGAGCA  245
      |||||||||| ||||| ||||||||||| |||||||||||||||||||||
seq2  ACATCAGAGAAGAGAG-AATATCAATCG-TTGCCTGCAGGAATCAGAGCA  236

seq1  GCCAATGAAATCTCTTTCTCTGTCTACTGGAGCCAGTAGGTA-CACTTAA  294
      ||||||| |||||||||||||||||||||||||||||||||| ||||| |
seq2  GCCAATG-AATCTCTTTCTCTGTCTACTGGAGCCAGTAGGTACCACTT-A  284

seq1  AAAAACAAAACATAAAAGATCAAGCAGCGTCTCTCTGGCTGCTTCTGAAA  344
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  AAAAACAAAACAT-AAAGATCAAGCAGCGTCTCTCTGGCTGC-TCTGAAA  332

seq1  GCCAATTCCTGCTTTCTATGCAGAGGTTTGTTTTAGCTTCATGCATGTAG  394
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAA-TCCTGCTTTCTATGCAGAGGTTTGTTTTAGCTTCATGCATGTAG  381

seq1  TGTGGGGGAGGAGGAAGAGGAAACTTGTCCCTTCTGAGAGGAGTGGAGAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGGAGGAGGAAGAGGAAACTTGTCCCTTCTGAGAGGAGTGGAGAC  431

seq1  AAAGGCAAGTCTGGGATCAGGCTAGATAGGGAGAGGGGCAACCAGCTCAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAAGTCTGGGATCAGGCTAGATAGGGAGAGGGGCAACCAGCTCAG  481

seq1  CAACGGTTTGAGAGAAAAGGCTGAAGGTGAAGGAGGGAGGAACCGCAGGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGGTTTGAGAGAAAAGGCTGAAGGTGAAGGAGGGAGGAACCGCAGGA  531

seq1  GGGACGTGTAATTTGTGAGCCACCCACAAAGGGGCAAGTAGACAAAAAGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACGTGTAATTTGTGAGCCACCCACAAAGGGGCAAGTAGACAAAAAGG  581

seq1  AAGGCTGGCCTGGGCCATCCGATGTCAAGGATAATGACGCTGGATAACAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGGCCTGGGCCATCCGATGTCAAGGATAATGACGCTGGATAACAA  631

seq1  AGCATGGCGAACATGAAGGGGACTTTGTGTGGCAGCTTCGTCCTGGGAAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGCGAACATGAAGGGGACTTTGTGTGGCAGCTTCGTCCTGGGAAG  681

seq1  ACCAAATCTCTTAATTTAGCTGAGGACTTCAAAATGGACTGCACAGAAGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATCTCTTAATTTAGCTGAGGACTTCAAAATGGACTGCACAGAAGG  731

seq1  TGTTCCTCTGTCAGCAGTAAAGTGATAGAGGCAGGGGCATAGCTTTACTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCTGTCAGCAGTAAAGTGATAGAGGCAGGGGCATAGCTTTACTA  781

seq1  TGTCCTCTACAGTAGCCTGAGGAGGCCATCTAATCTGTTAGCAATCTTAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTACAGTAGCCTGAGGAGGCCATCTAATCTGTTAGCAATCTTAC  831

seq1  CTCAGGCCAAGCCAAGATTCATGGCTTCCACTCAGAAAAGAATTTCAGAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCCAAGCCAAGATTCATGGCTTCCACTCAGAAAAGAATTTCAGAG  881

seq1  TAGCAAGTATGAAGGAGGGTTGGAGTTTAATAAAGATAGTATGGATTCGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGTATGAAGGAGGGTTGGAGTTTAATAAAGATAGTATGGATTCGA  931

seq1  AGAGAGTTAAGAAAGAAGAAGAGTAAGGAAGAAAGTGAGGTGCACCAGAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTTAAGAAAGAAGAAGAGTAAGGAAGAAAGTGAGGTGCACCAGAG  981

seq1  GGTGTGTATGGTCTTTAGTTGCCTTTGCAAGAGTCAAATATACCATTTCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTATGGTCTTTAGTTGCCTTTGCAAGAGTCAAATATACCATTTCT  1031

seq1  ATGATTTAAAAGCTACTGTGTTCCTATGGGTTGCTAAGAACCTAAACAGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTAAAAGCTACTGTGTTCCTATGGGTTGCTAAGAACCTAAACAGG  1081

seq1  ATCATAAGGTGGTTCTTGGGGTTACCAGACAGGATTATATATAGCACATA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAGGTGGTTCTTGGGGTTACCAGACAGGATTATATATAGCACATA  1131

seq1  ATATCTCTGGGATGTTGGAAGGTGGGATGTCTTCATTGTAAGCAATATAA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCTGGGATGTTGGAAGGTGGGATGTCTTCATTGTAAGCAATATAA  1181

seq1  ATAGTCTGAGAATTC  1209
      |||||||||||||||
seq2  ATAGTCTGAGAATTC  1196

seq1: chr2_142867132_142868247
seq2: B6Ng01-111D03.g_69_1157

seq1  GAATTCTGGTTACTATTACCCCCACCCTTTCGTATCTTCCAGCTTTACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTTACTATTACCCCCACCCTTTCGTATCTTCCAGCTTTACAA  50

seq1  GTCCTTTTCTCACCTTCATGTGTTTTGTTTTTGTTTGTTTGTTTTTAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTTCTCACCTTCATGTGTTTTGTTTTTGTTTGTTTGTTTTTAGTG  100

seq1  ACCTAGTGAGTTTAACTAGGGTCATATGTGTTACTGTAGGTTTGAGATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTGAGTTTAACTAGGGTCATATGTGTTACTGTAGGTTTGAGATTA  150

seq1  TCCTCTGAAGCTTGGTGGCTCAGCAGTGGATAGATACACAACTGAAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGAAGCTTGGTGGCTCAGCAGTGGATAGATACACAACTGAAGATA  200

seq1  AGGTCTGCCCATCCCCAGAATGTATCAGTATCCAATAGTTCAGTAGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGCCCATCCCCAGAATGTATCAGTATCCAATAGTTCAGTAGGGAG  250

seq1  GTGCCCATGTGCTCCTCCCCAATCCATGCTTCATCACCGACAGGCCCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCATGTGCTCCTCCCCAATCCATGCTTCATCACCGACAGGCCCAGT  300

seq1  CAACACTCACATTGTTCACAAAGAAATAAAAATGATTCTATTTAGTGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTCACATTGTTCACAAAGAAATAAAAATGATTCTATTTAGTGCCC  350

seq1  AGTCAACTTGCTTAAGTCAGATAGTCCAGTTGACCTTTAGAGTAATGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACTTGCTTAAGTCAGATAGTCCAGTTGACCTTTAGAGTAATGGCC  400

seq1  AGCAAATTGACTCATCCAATGGAAGAAAGCCAAGTGTCACTGTTCAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATTGACTCATCCAATGGAAGAAAGCCAAGTGTCACTGTTCAAAAA  450

seq1  ACAATTCCTATTTCATTGCACTTTCTCTCTTTTTTTTGTCATAAAACCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCCTATTTCATTGCACTTTCTCTCTTTTTTTTGTCATAAAACCTG  500

seq1  TATCATCTTTGTTTCATTGATAGGTCATGCAAAATCTCCTTTATAAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCTTTGTTTCATTGATAGGTCATGCAAAATCTCCTTTATAAGGGT  550

seq1  CAATCTCCTTATAAGAATTAGTCAATATTGGAATTGATTCTTTGACATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCCTTATAAGAATTAGTCAATATTGGAATTGATTCTTTGACATCT  600

seq1  CTTACAATAAAAAGAAAAGCAAGCCTTCAATGCAGTCCATGTTCTAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAATAAAAAGAAAAGCAAGCCTTCAATGCAGTCCATGTTCTAACAT  650

seq1  CTAAGATAGAAGCTAATGAGGAAGCTGAGGATGAAGTTCTGTTAATAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATAGAAGCTAATGAGGAAGCTGAGGATGAAGTTCTGTTAATAAAG  700

seq1  TGCTCACATAGCACACCGGGGAGGTTTGAGTTACACATCTTATATAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACATAGCACACCGGGGAGGTTTGAGTTACACATCTTATATAAGCT  750

seq1  TTCACATCTGAGAAATGGGAACAATGAGATTTTATTTTTACCATTGTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATCTGAGAAATGGGAACAATGAGATTTTATTTTTACCATTGTTAC  800

seq1  TATTTCATCTAGAAAAAGACTGAGTTGCTGATAATGACATGAAATGAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATCTAGAAAAAGACTGAGTTGCTGATAATGACATGAAATGAGTT  850

seq1  TTGAGCTATGCAGTAAAATTAGCTTTTAGAATGGTTAACCAATATAATTG  900
      |||||||||||||||||||||||||||||| ||| |||||||||||||||
seq2  TTGAGCTATGCAGTAAAATTAGCTTTTAGATTGG-TAACCAATATAATTG  899

seq1  TTTGGCTGATGAATACGGTAAACATTACATGAAAAAGTAATGTTTAAAAT  950
      |||||||||||||||| |||||||||||||||||||||||||||||||  
seq2  TTTGGCTGATGAATACCGTAAACATTACATGAAAAAGTAATGTTTAAA--  947

seq1  AAAGGTAAGATAATGTATTTTTACCAAAGACCTCAGTAATCACCATTACA  1000
       ||||| |||| |||||||||||||||||| |||||| |||| |||||||
seq2  TAAGGT-AGAT-ATGTATTTTTACCAAAGA-CTCAGT-ATCA-CATTACA  992

seq1  GAAAAAGTAAAAGGCTTTCCCCTTTATGGATGTGAATATGGGGTTATAAG  1050
      | ||| ||  || ||||| |||||||| |||||| |||||||    ||| 
seq2  G-AAAGGT--AATGCTTT-CCCTTTAT-GATGTG-ATATGGG----TAAA  1032

seq1  CCAGGATTGTACCGTCAATGAACAGTAATGGTAGTACCTCTACTTACAGT  1100
       |||||||||| |||| ||||   |||   |||||||| ||   ||||||
seq2  GCAGGATTGTA-CGTC-ATGA--CGTA--TGTAGTACC-CTCACTACAGT  1075

seq1  TTGATTCTTTAATTTT  1116
      |||||||||  |||||
seq2  TTGATTCTT--ATTTT  1089