BAC Information

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BAC

Clone NameB6Ng01-111D13
Chromosome2 (Build37)
Map Location 141,156,369 - 141,369,855
singlet/doubletdoublet
Overlap genenone
Upstream geneSel1l2, 2900006F19Rik, Flrt3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111D13.bB6Ng01-111D13.g
ACCDH917625DH917626
length1,1841,101
definitionDH917625|Mus musculus domesticus DNA, BAC clone: B6Ng01-111D13, 5' end.DH917626|Mus musculus domesticus DNA, BAC clone: B6Ng01-111D13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,156,369 - 141,157,567)(141,368,746 - 141,369,855)
sequence
gaattctcccaccacccttacttctcttcttcttggctcctctgctactc
taacaaagctaagtacaaacagtcttcatgaagcgtcctgactcttaaat
tccatgagacccttatttgatatggtgaaaatgggtaaagcattattcca
tcataggatcttgcatacaaactatactcaggagactatgatgtcccccc
ccccttttttttaactttctcctacaccattgactctcagtgtggtcctt
tggtcagcagcttcagcatcaccttggaagtcggtacaaagcattcctat
ccaccccactaggtgcccactagaaaccactaggggccaatagactgtat
ttcaagaaacccgtttagtggctttcagtttgttaaagtttgagacccac
tcttctatatcataatcaggtctttctagaggctatggattctttcggct
accagaatatttagatggcttgagatagacattgtagtttgtggataagt
tacccaaagaatttacaaaaggcactacttactgcataaaatatccactt
gacttttttatacccaaagttgtattgctagaaaatatattgagttttat
tggcaggtgattatagaagtttatttaatactaactgcacaaaagtttat
gcatgaaaatgctaaaattccttttagtaaggacttacttataaagcatc
ataattaatgtttttgaacatacaaaaactggatgcttacttaacttaaa
acttagtattttgtgtgactagttgtaaagatgatgactctggcttagtt
gtggtgaattgctctttgcagctttgtgaaccaactctgcattatgatct
cagaataccatcttggcagtttctaattcaagtcagtcttcggaaaggca
gcttgtttcaggggcttagtcctcaaagatggatataaatcagtggataa
ttgtgagagatccttcaggtatacactctcaggaactatcagacatgcag
tgacagagtcatagatctcctattggataagctttaatgatgttggtcca
ggagtaaggtgtctgtattaaccatctcatggcatagtttgtggactttt
tttttcaaaaaggcgggaaatcttatcaattactgtgtgaacgaatctaa
agagaaaataagatctcatttttctcctcttggg
gaattcatactggtggcttatcaacctcaaacagtagctattcagaaata
ttaattaactgtgtggtaggtaaccatatttttttagcttgttacctata
actactttcctcatgatgaagtataaaaaaaaatagtgagaatcaacctc
ttcaaatggggggatgttggaaacggaggaggaagaaatgcaaaacccat
aagttgccttaacactgaattttttgtttttcttgtttgaagatagtcag
ttagaggatatagagaaaattggaacgggaaagaaattttaataaatgtc
attgagacccaagagattatacatcaatctgacttttccaagccttcata
atgaggagctctgtccaaagtcagaggatcatatttaattttacaccaga
gtcctgaattgagtgttataagggacacaatttgtttcatgggctttagt
tgttgttttcctgttcctctccaaacacttagcagtggagggatttctgt
gtgcagcctgttgaaaaacaaagtgttgtgtgtttattcagctaacattc
acactggggaacatttaagactgaggtgttcccactgaggaacgagcaga
cagggcattacaatttatctaccttcattgccttccagaaaatgaaaaca
tggcagccttttaacaacaggaatccattttgaagtgaaatattgcaagt
agctaagcaatagaactttatatgctccattcaatctaatttaggtcgtc
tgacccttgtccccttttgattagaaacttaaatggctcccaatttcttt
tcaaccctaattgtcaaacttttcactcccttaccaacatatcttctagt
ctcatggtgcagagaaccctctctgggagaatatattttcacaatgattg
ttgggtcttaactactacacatgaagttttcaaaggcccaaattcatcca
ttattgacttcagaaatatttatcaaacactggaaatgtattgagtacat
gctcagtccgagacctcagtgagcagcaaatatacctgacctaacctcca
tgactggatagattgaatggatatattccaattatcatacaaataggata
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_141156369_141157567
seq2: B6Ng01-111D13.b_45_1228

seq1  GAATTCTCCCACCACCCTTACTTCTCTTCTTCTTGGCTCCTCTGCTACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCACCACCCTTACTTCTCTTCTTCTTGGCTCCTCTGCTACTC  50

seq1  TAACAAAGCTAAGTACAAACAGTCTTCATGAAGCGTCCTGACTCTTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGCTAAGTACAAACAGTCTTCATGAAGCGTCCTGACTCTTAAAT  100

seq1  TCCATGAGACCCTTATTTGATATGGTGAAAATGGGTAAAGCATTATTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAGACCCTTATTTGATATGGTGAAAATGGGTAAAGCATTATTCCA  150

seq1  TCATAGGATCTTGCATACAAACTATACTCAGGAGACTATGATGTCCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGATCTTGCATACAAACTATACTCAGGAGACTATGATGTCCCCCC  200

seq1  CCCCTTTTTTTTAACTTTCTCCTACACCATTGACTCTCAGTGTGGTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTTTTTTAACTTTCTCCTACACCATTGACTCTCAGTGTGGTCCTT  250

seq1  TGGTCAGCAGCTTCAGCATCACCTTGGAAGTCGGTACAAAGCATTCCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGCAGCTTCAGCATCACCTTGGAAGTCGGTACAAAGCATTCCTAT  300

seq1  CCACCCCACTAGGTGCCCACTAGAAACCACTAGGGGCCAATAGACTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCACTAGGTGCCCACTAGAAACCACTAGGGGCCAATAGACTGTAT  350

seq1  TTCAAGAAACCCGTTTAGTGGCTTTCAGTTTGTTAAAGTTTGAGACCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAAACCCGTTTAGTGGCTTTCAGTTTGTTAAAGTTTGAGACCCAC  400

seq1  TCTTCTATATCATAATCAGGTCTTTCTAGAGGCTATGGATTCTTTCGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTATATCATAATCAGGTCTTTCTAGAGGCTATGGATTCTTTCGGCT  450

seq1  ACCAGAATATTTAGATGGCTTGAGATAGACATTGTAGTTTGTGGATAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAATATTTAGATGGCTTGAGATAGACATTGTAGTTTGTGGATAAGT  500

seq1  TACCCAAAGAATTTACAAAAGGCACTACTTACTGCATAAAATATCCACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAAGAATTTACAAAAGGCACTACTTACTGCATAAAATATCCACTT  550

seq1  GACTTTTTTATACCCAAAGTTGTATTGCTAGAAAATATATTGAGTTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTTTATACCCAAAGTTGTATTGCTAGAAAATATATTGAGTTTTAT  600

seq1  TGGCAGGTGATTATAGAAGTTTATTTAATACTAACTGCACAAAAGTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGTGATTATAGAAGTTTATTTAATACTAACTGCACAAAAGTTTAT  650

seq1  GCATGAAAATGCTAAAATTCCTTTTAGTAAGGACTTACTTATAAAGCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAAATGCTAAAATTCCTTTTAGTAAGGACTTACTTATAAAGCATC  700

seq1  ATAATTAATGTTTTTGAACATACAAAAACTGGATGCTTACTTAACTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAATGTTTTTGAACATACAAAAACTGGATGCTTACTTAACTTAAA  750

seq1  ACTTAGTATTTTGTGTGACTAGTTGTAAAGATGATGACTCTGGCTTAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTATTTTGTGTGACTAGTTGTAAAGATGATGACTCTGGCTTAGTT  800

seq1  GTGGTGAATTGCTCTTTGCAGCTTTGTGAACCAACTCTGCATTATGATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGAATTGCTCTTTGCAGCTTTGTGAACCAACTCTGCATTATGATCT  850

seq1  CAGAAGTACCATCTTGGCAGTTTCTAATTCAAGTCAGTCTTCGGAAAGGC  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAA-TACCATCTTGGCAGTTTCTAATTCAAGTCAGTCTTCGGAAAGGC  899

seq1  AGCTTGTTTCCAGGGGCTTAGTCCTCAAAGATGGATATAAATCAGTGGAT  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTTT-CAGGGGCTTAGTCCTCAAAGATGGATATAAATCAGTGGAT  948

seq1  AATTGTGAGAGATCCTTTCAAGTTATACACTCTTCAGGAACTATCAGACA  1000
      |||||||||||||||||   || ||||||||| |||||||||||||||||
seq2  AATTGTGAGAGATCCTT--CAGGTATACACTC-TCAGGAACTATCAGACA  995

seq1  TGCAAGTGACAGAGTCATAGATCTCCTATTGGATAAGCTTTAATGATGTT  1050
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGC-AGTGACAGAGTCATAGATCTCCTATTGGATAAGCTTTAATGATGTT  1044

seq1  GTTCCCCAGGAGT-AGGTGTCTGTATTTACCATCTCATTGGCATAGGTTT  1099
      | |  |||||||| ||||||||||||| ||||||||| ||||||| ||||
seq2  GGT--CCAGGAGTAAGGTGTCTGTATTAACCATCTCA-TGGCATA-GTTT  1090

seq1  GTGGACTTTTTTTTTTCAGACATGC-TGAAATCTTACTCAATATAC--TG  1146
      |||||| ||||||||||| | | ||  ||||||||| ||||| |||  ||
seq2  GTGGAC-TTTTTTTTTCAAAAAGGCGGGAAATCTTA-TCAAT-TACTGTG  1137

seq1  TGGACAGATCTAAAAGAGAAAACAATAAGATAATCATTTTTTTCTCCT-T  1195
      || ||  |||| ||||||||   ||||||||  |||  |||||||||| |
seq2  TGAACGAATCT-AAAGAGAA---AATAAGAT-CTCA--TTTTTCTCCTCT  1180

seq1  TGGG  1199
      ||||
seq2  TGGG  1184

seq1: chr2_141368746_141369855
seq2: B6Ng01-111D13.g_68_1168 (reverse)

seq1  GTATCATATTTGTATGTATATTTGAATATATCTATTTCAATCTAATTCAG  50
      ||||| ||||||||||   ||| ||||||||| | |||||||| || |||
seq2  GTATCCTATTTGTATGATAATTGGAATATATCCA-TTCAATCT-ATCCAG  48

seq1  TTCATTGAGGTTAGGGTCAAGGTATATTTTGCTGCTCACTGA-GTCTCGG  99
       |||| ||||||| |||| ||||||| ||||||||||||||| |||||||
seq2  -TCATGGAGGTTA-GGTC-AGGTATA-TTTGCTGCTCACTGAGGTCTCGG  94

seq1  ACTGAGCATGTTACTCAATACATTTCCAGTGTTTGATAAATATTTCTGAA  149
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCATG-TACTCAATACATTTCCAGTGTTTGATAAATATTTCTGAA  143

seq1  GTCAATAATTGGATGAATTTTGGGCCTTTGAAAACTTCATGTGTAGTAGT  199
      |||||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  GTCAATAA-TGGATGAA-TTTGGGCCTTTGAAAACTTCATGTGTAGTAGT  191

seq1  TAAGACCCAACAATCATTGTGAAATATAATTTCT-CCAGAGAGGGTTCTC  248
      |||||||||||||||||||||||| |||  |||| |||||||||||||||
seq2  TAAGACCCAACAATCATTGTGAAA-ATATATTCTCCCAGAGAGGGTTCTC  240

seq1  TGCACCATGAGACTAGAAGATATGTTGGTAAGGGAGTGAAAAGTTTGACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCATGAGACTAGAAGATATGTTGGTAAGGGAGTGAAAAGTTTGACA  290

seq1  ATTAGGGTTGAAAAGAAATTGGGAGCCATTTTAAGTTTCTAATCAAAAGG  348
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTAGGGTTGAAAAGAAATTGGGAGCCA-TTTAAGTTTCTAATCAAAAGG  339

seq1  GGACAAGGGTCAGACGACCTAAATTAGATTGAATGGAGCATATAAAGTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGGGTCAGACGACCTAAATTAGATTGAATGGAGCATATAAAGTTC  389

seq1  TATTGCTTAGCTACTTGCAATATTTCACTTCAAAATGGATTCCTGTTGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTTAGCTACTTGCAATATTTCACTTCAAAATGGATTCCTGTTGTT  439

seq1  AAAAGGCTGCCATGTTTTCATTTTCTGGAAGGCAATGAAGGTAGATAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCTGCCATGTTTTCATTTTCTGGAAGGCAATGAAGGTAGATAAAT  489

seq1  TGTAATGCCCTGTCTGCTCGTTCCTCAGTGGGAACACCTCAGTCTTAAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGCCCTGTCTGCTCGTTCCTCAGTGGGAACACCTCAGTCTTAAAT  539

seq1  GTTCCCCAGTGTGAATGTTAGCTGAATAAACACACAACACTTTGTTTTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCAGTGTGAATGTTAGCTGAATAAACACACAACACTTTGTTTTTC  589

seq1  AACAGGCTGCACACAGAAATCCCTCCACTGCTAAGTGTTTGGAGAGGAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCTGCACACAGAAATCCCTCCACTGCTAAGTGTTTGGAGAGGAAC  639

seq1  AGGAAAACAACAACTAAAGCCCATGAAACAAATTGTGTCCCTTATAACAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACAACAACTAAAGCCCATGAAACAAATTGTGTCCCTTATAACAC  689

seq1  TCAATTCAGGACTCTGGTGTAAAATTAAATATGATCCTCTGACTTTGGAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCAGGACTCTGGTGTAAAATTAAATATGATCCTCTGACTTTGGAC  739

seq1  AGAGCTCCTCATTATGAAGGCTTGGAAAAGTCAGATTGATGTATAATCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCCTCATTATGAAGGCTTGGAAAAGTCAGATTGATGTATAATCTC  789

seq1  TTGGGTCTCAATGACATTTATTAAAATTTCTTTCCCGTTCCAATTTTCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCTCAATGACATTTATTAAAATTTCTTTCCCGTTCCAATTTTCTC  839

seq1  TATATCCTCTAACTGACTATCTTCAAACAAGAAAAACAAAAAATTCAGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCTCTAACTGACTATCTTCAAACAAGAAAAACAAAAAATTCAGTG  889

seq1  TTAAGGCAACTTATGGGTTTTGCATTTCTTCCTCCTCCGTTTCCAACATC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCAACTTATGGGTTTTGCATTTCTTCCTCCTCCGTTTCCAACATC  939

seq1  CCCCCATTTGAAGAGGTTGATTCTCACTATTTTTTTTTATACTTCATCAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATTTGAAGAGGTTGATTCTCACTATTTTTTTTTATACTTCATCAT  989

seq1  GAGGAAAGTAGTTATAGGTAACAAGCTAAAAAAATATGGTTACCTACCAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAGTAGTTATAGGTAACAAGCTAAAAAAATATGGTTACCTACCAC  1039

seq1  ACAGTTAATTAATATTTCTGAATAGCTACTGTTTGAGGTTGATAAGCCAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAATTAATATTTCTGAATAGCTACTGTTTGAGGTTGATAAGCCAC  1089

seq1  CAGTATGAATTC  1110
      ||||||||||||
seq2  CAGTATGAATTC  1101