BAC Information

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BAC

Clone NameB6Ng01-111E16
Chromosome2 (Build37)
Map Location 149,531,216 - 149,687,082
singlet/doubletdoublet
Overlap geneEG667048, C530025M09Rik, OTTMUSG00000015750
Upstream geneNapb, Cstl1, Cst11, 8030411F24Rik, Cst12, Cst8, Cst13, Cst9, 9230104L09Rik, Cst3, OTTMUSG00000015744, Gm1330, EG668921, LOC433483, LOC383754, LOC100043593, LOC241715, Cst10
Downstream geneLOC279056, Zfp120, EG245174, 3300002I08Rik, LOC100043832, OTTMUSG00000015730, LOC668924, OTTMUSG00000015743, LOC545472, Cst7, 2310001A20Rik, Acss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111E16.bB6Ng01-111E16.g
ACCDH917672DH917673
length1,1851,085
definitionDH917672|Mus musculus domesticus DNA, BAC clone: B6Ng01-111E16, 5' end.DH917673|Mus musculus domesticus DNA, BAC clone: B6Ng01-111E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,531,216 - 149,532,420)(149,685,984 - 149,687,082)
sequence
gaattcatactgcataagcacactgctaaaccatctacctatagccacct
gtatggtatatttctttactgacccaactctttgcattgtttttcactct
tcctacagttctgtcctgaaagcacattgttaaacaatcctatcattttc
cttgcctgatgttcgatttctctagaagacttggttcagttgtccctctt
gactcttctctataatatcacagaacacatattgcattcctagtggtcct
gaataagttgcattttaattcatttatttttactacatttaatacatttc
aagagccttcatgtggtagattcttcatatgggatggtttgtactccctt
gaaacatagatgggttcagccaccacccttaaaagaaaaattaaataaat
gaatgttgtgggccttttgttagctcatatcagaaaccatacaggtcatt
tgtgccatagtcactgccaggttcacaggaggaaattgaccacaggttgg
atggaataagtagcataatgcaggtacagatataataatcttgtgtagtt
aagaagtcaggatatcacacccctcgatggaatcatggagtagacaaaga
acactgaaaaaataaaaaatctaaataatgtatgcacttcattcatagta
ctgtatcaattagtatatcaattatgacaaacacaatatactaatgtaaa
atgatatttacaagggcaatggaaactcttggtactatctccataattct
tctataagcaaaacccatgagtaaaagcaaaaccttcctaacagtgtgta
tgaggccagttgtctgttatgtcctatttctctgcatttcctattgtaca
aaataacatgatttccatgagtaatttaccttgttttctgataacatctt
tttataattttttgaaagaatacatttagttcacacaatttcatgtaatt
ctcagttaattgattactgagctccttagcagtacatttaaggagatata
taggatagatccattgacatttccccatgattagatttatcagtggtaac
atgttacatttgatgtaccaggatcttatttagcttcaacatgcttatat
acgaactaattagaaaggcaaacggcatactaagacttccatagaagaat
aatataaggttaaggtcatttattctaccaataaa
gaattctctgaaaggctatggaacctagacaggaaccatcccaagatata
cacgccacataatcaaaattctgtgccttaagtacttatgccactacagg
ctggtaggcattggcagctctccacagccatccgtgaatgtcctgactgt
gcttatggacagcatgtgatgcagccttgctgggtggcagaggcggactg
tggtgaatgtgaaccaattatcttccatggctcctgaaataactgagtac
cagcaggtgggataatgagagaatagaaaacctcatttcctgttcctgtt
ccaaccagtcagaacatcatcagatcaataaatatttccacctctccttc
aaatggtggcattcatgaatatcaagatctttgaccagaacagtccttgt
ggaaaacagtgtagatattcctttaaaaaaagagagagagagatgcaaaa
ccactgtatgatgcagaaatcccactactggacatatatctaaaggaaat
ggaattggtctctggaaagacacaagtgaattgtgttccctgcagggcca
tttgcaagaggcaagattcataatcaacttaagtgttcttcaatggatga
acaaataaagacaatgattacataaacatggcggaatagtatttcctctt
taaaaaaaaaagaaaaagaaaaaagaagcaacagttctattggccatata
gatgaacctggaggacatgtattaaataaactaagacataggccagattc
cacatacatgatatagagactgtaaagtagtcaatttatggatgtagcaa
agcagaatgttgagggacagaggctggaaatcacaggggtggtgacaaga
gattttgggtcgaatggtaccaagttttgctcatgcaaagtgagcaagtc
tgagatatttctgaaatcagtgtctatacatgacattataggctaattcc
tagtacctgtgagatgatatgttttcttagtgttctagactcttgattac
agagacatgtgggtaccttgggagcatgggtgacttgcagcaaagggtgt
ggtagatggcctcaggtttgcatagtctcaagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_149531216_149532420
seq2: B6Ng01-111E16.b_44_1228

seq1  GAATTCATACTGCATAAGCACACTGCTAAACCATCTACCTATAGCCACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACTGCATAAGCACACTGCTAAACCATCTACCTATAGCCACCT  50

seq1  GTATGGTATATTTCTTTACTGACCCAACTCTTTGCATTGTTTTTCACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGTATATTTCTTTACTGACCCAACTCTTTGCATTGTTTTTCACTCT  100

seq1  TCCTACAGTTCTGTCCTGAAAGCACATTGTTAAACAATCCTATCATTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAGTTCTGTCCTGAAAGCACATTGTTAAACAATCCTATCATTTTC  150

seq1  CTTGCCTGATGTTCGATTTCTCTAGAAGACTTGGTTCAGTTGTCCCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTGATGTTCGATTTCTCTAGAAGACTTGGTTCAGTTGTCCCTCTT  200

seq1  GACTCTTCTCTATAATATCACAGAACACATATTGCATTCCTAGTGGTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTCTCTATAATATCACAGAACACATATTGCATTCCTAGTGGTCCT  250

seq1  GAATAAGTTGCATTTTAATTCATTTATTTTTACTACATTTAATACATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGTTGCATTTTAATTCATTTATTTTTACTACATTTAATACATTTC  300

seq1  AAGAGCCTTCATGTGGTAGATTCTTCATATGGGATGGTTTGTACTCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCTTCATGTGGTAGATTCTTCATATGGGATGGTTTGTACTCCCTT  350

seq1  GAAACATAGATGGGTTCAGCCACCACCCTTAAAAGAAAAATTAAATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATAGATGGGTTCAGCCACCACCCTTAAAAGAAAAATTAAATAAAT  400

seq1  GAATGTTGTGGGCCTTTTGTTAGCTCATATCAGAAACCATACAGGTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTGTGGGCCTTTTGTTAGCTCATATCAGAAACCATACAGGTCATT  450

seq1  TGTGCCATAGTCACTGCCAGGTTCACAGGAGGAAATTGACCACAGGTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCATAGTCACTGCCAGGTTCACAGGAGGAAATTGACCACAGGTTGG  500

seq1  ATGGAATAAGTAGCATAATGCAGGTACAGATATAATAATCTTGTGTAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATAAGTAGCATAATGCAGGTACAGATATAATAATCTTGTGTAGTT  550

seq1  AAGAAGTCAGGATATCACACCCCTCGATGGAATCATGGAGTAGACAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTCAGGATATCACACCCCTCGATGGAATCATGGAGTAGACAAAGA  600

seq1  ACACTGAAAAAATAAAAAATCTAAATAATGTATGCACTTCATTCATAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAAAAAATAAAAAATCTAAATAATGTATGCACTTCATTCATAGTA  650

seq1  CTGTATCAATTAGTATATCAATTATGACAAACACAATATACTAATGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCAATTAGTATATCAATTATGACAAACACAATATACTAATGTAAA  700

seq1  ATGATATTTACAAGGGCAATGGAAACTCTTGGTACTATCTCCATAATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATTTACAAGGGCAATGGAAACTCTTGGTACTATCTCCATAATTCT  750

seq1  TCTATAAGCAAAACCCATGAGTAAAAGCAAAACCTTCCTAACAGTGTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAGCAAAACCCATGAGTAAAAGCAAAACCTTCCTAACAGTGTGTA  800

seq1  TGAGGCCAGTTGTCTGTTATGTCCTATTTCTCTGCATTTCCTATTGTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCAGTTGTCTGTTATGTCCTATTTCTCTGCATTTCCTATTGTACA  850

seq1  AAATAACATGATTTCCATGAGTAATTTACCTTGTTTTTCTGATAACATCT  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAATAACATGATTTCCATGAGTAATTTACCTTG-TTTTCTGATAACATCT  899

seq1  TTTTATAATTTTTTGAAAG-ATACATTTAGTTTCACACAATTTCATGTAA  949
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  TTTTATAATTTTTTGAAAGAATACATTTAG-TTCACACAATTTCATGTAA  948

seq1  TTTCTCAGTTAATTGATTACTGAGCTCCTTAGCAGGTACATTTAAGGAGA  999
       ||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  -TTCTCAGTTAATTGATTACTGAGCTCCTTAGCA-GTACATTTAAGGAG-  995

seq1  TAATAAATAAGATAAAGATCCATTGACATTTCCCCATTGATTAAGATTTA  1049
        ||| ||| |||  ||||||||||||||||||||| ||||| |||||||
seq2  --ATATATAGGAT--AGATCCATTGACATTTCCCCA-TGATT-AGATTTA  1039

seq1  TCAGT-GTAACTATGTTACATTTGATGTAACCAGAATCTAATTTAGCCTT  1098
      ||||| ||||| |||||||||||||||| ||||| |||| |||||||   
seq2  TCAGTGGTAAC-ATGTTACATTTGATGT-ACCAGGATCTTATTTAGC---  1084

seq1  TCCAACAATGCTTATAAACAGACTACAT-GAGAGGCAAACAGCAATACCT  1147
      | |||| ||||||||| ||  ||||  | || |||||||| || ||||  
seq2  TTCAAC-ATGCTTATATACGAACTAATTAGAAAGGCAAACGGC-ATACTA  1132

seq1  AGACTTTTCCATAGGAGTAATAAAATTAAAGTTTAGAGTCATTTATTCTA  1197
      ||||  |||||||| || ||||| ||  ||| |||  |||||||||||||
seq2  AGAC--TTCCATAGAAG-AATAATAT--AAGGTTAAGGTCATTTATTCTA  1177

seq1  CCCATAAA  1205
      || |||||
seq2  CCAATAAA  1185

seq1: chr2_149685984_149687082
seq2: B6Ng01-111E16.g_67_1151 (reverse)

seq1  TGGC-TGAGACATATGCAGACCTGAGGCCATCTA-CACACCCTTGTGCTG  48
      |||| |||||| |||||| ||||||||||||||| ||||||||| |||||
seq2  TGGCTTGAGAC-TATGCAAACCTGAGGCCATCTACCACACCCTT-TGCTG  48

seq1  CAAGTCACCCATTGCTTCCAAGGTACCCACATTGTCTTCTTGTAATCAAG  98
      ||||||||||| |||| |||||||||||||| |||||   ||||||||||
seq2  CAAGTCACCCA-TGCTCCCAAGGTACCCACA-TGTCT--CTGTAATCAAG  94

seq1  AGTTCTAAGAACACTTAAGAAAACATATTCATTCTTCACAGGTACTTAGG  148
      || ||| ||||||| |||||||||||| ||||   |||||||||| ||||
seq2  AG-TCT-AGAACAC-TAAGAAAACATA-TCAT--CTCACAGGTAC-TAGG  137

seq1  AATTTAGCCTATATTGTCATGTATAGACACTGATTTCAGAAAATATCTCA  198
      || |||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  AA-TTAGCCTATAATGTCATGTATAGACACTGATTTCAG-AAATATCTCA  185

seq1  GACTTGCTCACTTTGCATGAGCAAAACTTGGTACCATTCGA-CCAATATC  247
      ||||||||||||||||||||||||||||||||||||||||| |||| |||
seq2  GACTTGCTCACTTTGCATGAGCAAAACTTGGTACCATTCGACCCAAAATC  235

seq1  TCCTTGTCACCACCCCTGTGATTTCCAGCCTCTGTCCTTCACCATTCTGC  297
      | ||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  T-CTTGTCACCACCCCTGTGATTTCCAGCCTCTGTCCCTCAACATTCTGC  284

seq1  TTTGCTACATCCATAAATTTGACTACTTTACAGTCTCTATATCATGTATG  347
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTGCTACATCCATAAA-TTGACTACTTTACAGTCTCTATATCATGTATG  333

seq1  TGGAATCTGGCCTATGTCTTAGTTTATTTAATACATGTCCTCCAGGTTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCTGGCCTATGTCTTAGTTTATTTAATACATGTCCTCCAGGTTCA  383

seq1  TCTATATGGCCAATAGAACTGTTGCTTCTTTTTTCTTTTTCTTTTTTTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATGGCCAATAGAACTGTTGCTTCTTTTTTCTTTTTCTTTTTTTTT  433

seq1  TAAAGAGGAAATACTATTCCGCCATGTTTATGTAATCATTGTCTTTATTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGGAAATACTATTCCGCCATGTTTATGTAATCATTGTCTTTATTT  483

seq1  GTTCATCCATTGAAGAACACTTAAGTTGATTATGAATCTTGCCTCTTGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCCATTGAAGAACACTTAAGTTGATTATGAATCTTGCCTCTTGCA  533

seq1  AATGGCCCTGCAGGGAACACAATTCACTTGTGTCTTTCCAGAGACCAATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCCTGCAGGGAACACAATTCACTTGTGTCTTTCCAGAGACCAATT  583

seq1  CCATTTCCTTTAGATATATGTCCAGTAGTGGGATTTCTGCATCATACAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCTTTAGATATATGTCCAGTAGTGGGATTTCTGCATCATACAGT  633

seq1  GGTTTTGCATCTCTCTCTCTCTTTTTTTAAAGGAATATCTACACTGTTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGCATCTCTCTCTCTCTTTTTTTAAAGGAATATCTACACTGTTTT  683

seq1  CCACAAGGACTGTTCTGGTCAAAGATCTTGATATTCATGAATGCCACCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGGACTGTTCTGGTCAAAGATCTTGATATTCATGAATGCCACCAT  733

seq1  TTGAAGGAGAGGTGGAAATATTTATTGATCTGATGATGTTCTGACTGGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGAGAGGTGGAAATATTTATTGATCTGATGATGTTCTGACTGGTT  783

seq1  GGAACAGGAACAGGAAATGAGGTTTTCTATTCTCTCATTATCCCACCTGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGGAACAGGAAATGAGGTTTTCTATTCTCTCATTATCCCACCTGC  833

seq1  TGGTACTCAGTTATTTCAGGAGCCATGGAAGATAATTGGTTCACATTCAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTCAGTTATTTCAGGAGCCATGGAAGATAATTGGTTCACATTCAC  883

seq1  CACAGTCCGCCTCTGCCACCCAGCAAGGCTGCATCACATGCTGTCCATAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCCGCCTCTGCCACCCAGCAAGGCTGCATCACATGCTGTCCATAA  933

seq1  GCACAGTCAGGACATTCACGGATGGCTGTGGAGAGCTGCCAATGCCTACC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTCAGGACATTCACGGATGGCTGTGGAGAGCTGCCAATGCCTACC  983

seq1  AGCCTGTAGTGGCATAAGTACTTAAGGCACAGAATTTTGATTATGTGGCG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTAGTGGCATAAGTACTTAAGGCACAGAATTTTGATTATGTGGCG  1033

seq1  TGTATATCTTGGGATGGTTCCTGTCTAGGTTCCATAGCCTTTCAGAGAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATCTTGGGATGGTTCCTGTCTAGGTTCCATAGCCTTTCAGAGAAT  1083

seq1  TC  1099
      ||
seq2  TC  1085