BAC Information

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BAC

Clone NameB6Ng01-111O10
Chromosome2 (Build37)
Map Location 16,635,477 - 16,809,329
singlet/doubletdoublet
Overlap genePlxdc2
Upstream geneLOC625457
Downstream gene4930515L03Rik, LOC383665, Nebl, LOC100041319, LOC100041047
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111O10.bB6Ng01-111O10.g
ACCDH918114DH918115
length1,0581,169
definitionDH918114|Mus musculus domesticus DNA, BAC clone: B6Ng01-111O10, 5' end.DH918115|Mus musculus domesticus DNA, BAC clone: B6Ng01-111O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,635,477 - 16,636,538)(16,808,149 - 16,809,329)
sequence
gaattcagtgggttgggttgagaaatgaaacaaaatcctactccttgtgt
tgtgatgttaaatttttaatatggatagaaggttctgtcttagagtttct
attcctgcacaaacatcatgaccaagaagcaagttggggaggaaagggtt
tattcagcttacacttccatgctgctgttcatcaccaaggaagtcaggac
tggaactcaagcaggtcaggaagcaggagctgatgcagaggtcatggagg
gatgttccttactggcttgcttccactggcttgctctgcctgctctctta
tagaaccaagactaccagcccagggatggcaccacccacaagggggcctc
cccccttgatcactaattgagaaaatgccttacagctggatctcatggag
gcatttccccaactgaagctcctttctctgtgataactccagcctgtgtc
aagttgacacaaaactagccagaacaggtttaaaaacaaaaacagaaaag
gaatgaaaacaaacaagcaaacaggcaaacaaacacacaaagataactag
agtccatgggatgagtagaggtggggatctatgctatgtagaagactccc
tgtcagtaatggcttcataaaagcacttctcgttcacaatacaggtctct
taccatcaacctgaacataatgaatgcctgtttcacttatacccactgca
ttatctttcttttctaagataaattattatatttattaatgtttaaaaat
aaaagtttctttcctataaaattaactgcacactagtttccatttcatgt
gttctgctgaaagcaggatgcatgaatgccccttgaaatgcaatgacatc
acagtcagtatatgtcctataagattgtgttcaaatttttaatttagaat
cctgtcatcgtttttggtttctctagaaattcttgtcccattaacctgca
agaaaacctagatgtgatctcttggaatccatggccatgtggtaatcatt
ttattcacatgaagcaagtttcaatgggcttagagccagggaagagttcc
tacctttt
gaattcttttagaaaatgtaacttccaatatcattttgagaaagggaggc
tacagagctcagtgaatattttattttctatgggaaataattttaaaata
gctttataaaatcctttctgtgaactgaatgagttattaaataactgaat
acgttattagaagcaaggcatgcacacctcatttccatcctcattcgtat
agtaaccaccagtctcttggtgagtgtgtgtatggatgtgtgggctgaga
taatgattcacggtaacaatacatttttttgttttattattttctgacat
tgactaataatacttatagagtttatacttaatgtatatgaccatactga
tggaaatttaatctcttattttatttcatttgtatgaaagattccataca
cataatattttcattttctttactttctgaaatgtactttaggtttcata
ccaagttatattttcacataatagcctttttacatttaaaatgaaacaat
tatgctatcatgttataatattttctgcagaagcaattaactcagagtaa
atattaacaaatgtctttaaaaataggccataagaaaaataagtgatatt
cataaaagcacttcttttagttgtaatacttaaaaatttctatttgccac
aaaaaataatttttgtgatttaaacttcttttacttcatttatttcttac
tacatatagatgaaataatgggctgttctatttttatagccatggaaaga
atgttcatgtgctaaaaatctaaaaaatttcaacatccagctcagaactc
agttttcaaagtatagtgggctcaaagggagtaaattgtatttaattatt
tttatgtcttgaggacatattgattttcttgtagtgttctttctttcaga
aaatagtcatttaaaattgctgtgctttgtcaagtacaggcataaaagtg
tcgctggtcaaacacaccacaattccgagttgaattctaatttagttgtt
gctctgtatgtcataatttcctaaaagaaataatagaactgcatagacat
ttattaatgagagtgaccagcctgtctctgtggggggccgggtcctggtc
actaccaatgaaacatgcaccttggtgtgatccctcgatggcctctcgct
gggggtcggtcccttggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_16635477_16636538
seq2: B6Ng01-111O10.b_48_1105

seq1  GAATTCAGTGGGTTGGGTTGAGAAATGAAACAAAATCCTACTCCTTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGGTTGGGTTGAGAAATGAAACAAAATCCTACTCCTTGTGT  50

seq1  TGTGATGTTAAATTTTTAATATGGATAGAAGGTTCTGTCTTAGAGTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGTTAAATTTTTAATATGGATAGAAGGTTCTGTCTTAGAGTTTCT  100

seq1  ATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTT  150

seq1  TATTCAGCTTACACTTCCATGCTGCTGTTCATCACCAAGGAAGTCAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGCTTACACTTCCATGCTGCTGTTCATCACCAAGGAAGTCAGGAC  200

seq1  TGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGTCATGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGTCATGGAGG  250

seq1  GATGTTCCTTACTGGCTTGCTTCCACTGGCTTGCTCTGCCTGCTCTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCCTTACTGGCTTGCTTCCACTGGCTTGCTCTGCCTGCTCTCTTA  300

seq1  TAGAACCAAGACTACCAGCCCAGGGATGGCACCACCCACAAGGGGGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCAAGACTACCAGCCCAGGGATGGCACCACCCACAAGGGGGCCTC  350

seq1  CCCCCTTGATCACTAATTGAGAAAATGCCTTACAGCTGGATCTCATGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTGATCACTAATTGAGAAAATGCCTTACAGCTGGATCTCATGGAG  400

seq1  GCATTTCCCCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCCTGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCCCCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCCTGTGTC  450

seq1  AAGTTGACACAAAACTAGCCAGAACAGGTTTAAAAACAAAAACAGAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGACACAAAACTAGCCAGAACAGGTTTAAAAACAAAAACAGAAAAG  500

seq1  GAATGAAAACAAACAAGCAAACAGGCAAACAAACACACAAAGATAACTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAAACAAACAAGCAAACAGGCAAACAAACACACAAAGATAACTAG  550

seq1  AGTCCATGGGATGAGTAGAGGTGGGGATCTATGCTATGTAGAAGACTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATGGGATGAGTAGAGGTGGGGATCTATGCTATGTAGAAGACTCCC  600

seq1  TGTCAGTAATGGCTTCATAAAAGCACTTCTCGTTCACAATACAGGTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTAATGGCTTCATAAAAGCACTTCTCGTTCACAATACAGGTCTCT  650

seq1  TACCATCAACCTGAACATAATGAATGCCTGTTTCACTTATACCCACTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCAACCTGAACATAATGAATGCCTGTTTCACTTATACCCACTGCA  700

seq1  TTATCTTTCTTTTCTAAGATAAATTATTATATTTATTAATGTTTAAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTCTTTTCTAAGATAAATTATTATATTTATTAATGTTTAAAAAT  750

seq1  AAAAGTTTCTTTCCTATAAAATTAACTGCACACTAGTTTCCATTTCATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTCTTTCCTATAAAATTAACTGCACACTAGTTTCCATTTCATGT  800

seq1  GTTCTGCTGAAAGCAGGATGCATGAATGCCCCTTGAAATGCAATGACATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCTGAAAGCAGGATGCATGAATGCCCCTTGAAATGCAATGACATC  850

seq1  ACAGTCAGTATATGTCCTAT-AGATTGTGTTCAAA-TTTTAATTTAGAAT  898
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  ACAGTCAGTATATGTCCTATAAGATTGTGTTCAAATTTTTAATTTAGAAT  900

seq1  TCTGTCATCGTTTTTGGTTTCTCTAGAAATTCTTGTTCCATTAACCTGCA  948
       ||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  CCTGTCATCGTTTTTGGTTTCTCTAGAAATTCTTGTCCCATTAACCTGC-  949

seq1  AAGAAAACCTAGATTGTGATCTCTTGGAATCCATGGCCATGTGGGTAATC  998
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  AAGAAAACCTAGA-TGTGATCTCTTGGAATCCATGGCCATGT-GGTAATC  997

seq1  ATTTTATTCACATGAAGCAAAGTTTCTATTGGGCTTTAGAGCCCAGGGAA  1048
      |||||||||||||||||| ||||||| | ||||| |||||| ||||||||
seq2  ATTTTATTCACATGAAGC-AAGTTTC-AATGGGC-TTAGAG-CCAGGGAA  1043

seq1  GAGTT-CTACCTTTT  1062
      ||||| |||||||||
seq2  GAGTTCCTACCTTTT  1058

seq1: chr2_16808149_16809329
seq2: B6Ng01-111O10.g_66_1234 (reverse)

seq1  TTCCAAAGGGACCGGACCCCAGGCAGA-GCCATCGAGGGGGCTACAAACA  49
      |||| |||||||||  ||||||  ||| |||||||||||  | || | ||
seq2  TTCC-AAGGGACCGACCCCCAGCGAGAGGCCATCGAGGGATC-AC-ACCA  47

seq1  AGATGGCATGTCTCATGTGTAGTGACCAGGACAGG---CACCACAGAGAA  96
      || | |||||| ||||  ||||||||||||||  |   | ||||||||| 
seq2  AGGT-GCATGTTTCATTGGTAGTGACCAGGACCCGGCCCCCCACAGAGAC  96

seq1  CAGCTGTGTCA-TCTCATTAAATAGATGTCTATGCAGTCTTATTATTTCT  145
        |||| |||| ||||||| |||| |||||||||||||  ||||||||||
seq2  AGGCTG-GTCACTCTCATT-AATAAATGTCTATGCAGTTCTATTATTTCT  144

seq1  TTTAGTGAAAATTATGACAATACAGAAGCAAACAACTAAAATTAGAATTC  195
      ||||  | |||||||||| |||||| ||| ||||||| ||||||||||||
seq2  TTTA--GGAAATTATGAC-ATACAG-AGC-AACAACT-AAATTAGAATTC  188

seq1  AACTCGGAATTGTGTGTGTGTGTGACCAGCGACACTTTTATGCCTGTACT  245
      |||||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  AACTCGGAATTGTG-GTGTGTTTGACCAGCGACACTTTTATGCCTGTACT  237

seq1  TGACAAAGGCACAGCAATTTTTAAATGACTAATTTTCTGAAAGAAAAGAA  295
      ||||||| ||||||||| |||||||||||| |||||||||||| ||||||
seq2  TGACAAA-GCACAGCAA-TTTTAAATGACT-ATTTTCTGAAAG-AAAGAA  283

seq1  CACTACAAAGAAAATCAATATGTCCTCAAAGACATAAAAATAATTAAATA  345
      |||||| |||||||||||||||||||| ||||||||||||||||||||||
seq2  CACTAC-AAGAAAATCAATATGTCCTC-AAGACATAAAAATAATTAAATA  331

seq1  CAATTTACTCCCTTTGAG-CCACTATACTTTG-AAACTGAGTTCTGAGCT  393
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  CAATTTACTCCCTTTGAGCCCACTATACTTTGAAAACTGAGTTCTGAGCT  381

seq1  GGATGTTGAAATTTTTTAGATTTTTAGCACATGAACATTCTTTCCATGGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTGAAATTTTTTAGATTTTTAGCACATGAACATTCTTTCCATGGC  431

seq1  TATAAAAATAGAACAGCCCATTATTTCATCTATATGTAGTAAGAAATAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAATAGAACAGCCCATTATTTCATCTATATGTAGTAAGAAATAAA  481

seq1  TGAAGTAAAAGAAGTTTAAATCACAAAAATTATTTTTTGTGGCAAATAGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAAAAGAAGTTTAAATCACAAAAATTATTTTTTGTGGCAAATAGA  531

seq1  AATTTTTAAGTATTACAACTAAAAGAAGTGCTTTTATGAATATCACTTAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAAGTATTACAACTAAAAGAAGTGCTTTTATGAATATCACTTAT  581

seq1  TTTTCTTATGGCCTATTTTTAAAGACATTTGTTAATATTTACTCTGAGTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTATGGCCTATTTTTAAAGACATTTGTTAATATTTACTCTGAGTT  631

seq1  AATTGCTTCTGCAGAAAATATTATAACATGATAGCATAATTGTTTCATTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTTCTGCAGAAAATATTATAACATGATAGCATAATTGTTTCATTT  681

seq1  TAAATGTAAAAAGGCTATTATGTGAAAATATAACTTGGTATGAAACCTAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTAAAAAGGCTATTATGTGAAAATATAACTTGGTATGAAACCTAA  731

seq1  AGTACATTTCAGAAAGTAAAGAAAATGAAAATATTATGTGTATGGAATCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATTTCAGAAAGTAAAGAAAATGAAAATATTATGTGTATGGAATCT  781

seq1  TTCATACAAATGAAATAAAATAAGAGATTAAATTTCCATCAGTATGGTCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACAAATGAAATAAAATAAGAGATTAAATTTCCATCAGTATGGTCA  831

seq1  TATACATTAAGTATAAACTCTATAAGTATTATTAGTCAATGTCAGAAAAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTAAGTATAAACTCTATAAGTATTATTAGTCAATGTCAGAAAAT  881

seq1  AATAAAACAAAAAAATGTATTGTTACCGTGAATCATTATCTCAGCCCACA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACAAAAAAATGTATTGTTACCGTGAATCATTATCTCAGCCCACA  931

seq1  CATCCATACACACACTCACCAAGAGACTGGTGGTTACTATACGAATGAGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATACACACACTCACCAAGAGACTGGTGGTTACTATACGAATGAGG  981

seq1  ATGGAAATGAGGTGTGCATGCCTTGCTTCTAATAACGTATTCAGTTATTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATGAGGTGTGCATGCCTTGCTTCTAATAACGTATTCAGTTATTT  1031

seq1  AATAACTCATTCAGTTCACAGAAAGGATTTTATAAAGCTATTTTAAAATT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTCATTCAGTTCACAGAAAGGATTTTATAAAGCTATTTTAAAATT  1081

seq1  ATTTCCCATAGAAAATAAAATATTCACTGAGCTCTGTAGCCTCCCTTTCT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCATAGAAAATAAAATATTCACTGAGCTCTGTAGCCTCCCTTTCT  1131

seq1  CAAAATGATATTGGAAGTTACATTTTCTAAAAGAATTC  1181
      ||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGATATTGGAAGTTACATTTTCTAAAAGAATTC  1169