BAC Information

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BAC

Clone NameB6Ng01-111O11
Chromosome2 (Build37)
Map Location 105,591,810 - 105,624,917
singlet/doubletdoublet
Overlap geneElp4
Upstream geneQser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, LOC100043394
Downstream geneImmp1l, LOC100043402, Dph4, LOC668765, Dcdc5, 9330126M15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111O11.bB6Ng01-111O11.g
ACCDH918116DH918117
length4551,097
definitionDH918116|Mus musculus domesticus DNA, BAC clone: B6Ng01-111O11, 5' end.DH918117|Mus musculus domesticus DNA, BAC clone: B6Ng01-111O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,624,457 - 105,624,917)(105,591,810 - 105,592,920)
sequence
tttgacatgctttctgactatgtgctagagctatggagtgactgattatt
acattgaaaaatacattcttccaaagaattatactgtaccagttgggaca
cagcaaaccatagttaagggatcagtctttggaataagagacaggttgat
ctgtccctgctggtacttttggcctttctgactttggacaagataagttg
cttaaactctctgaactatacatttactcactggtaaaacagtggagcat
gatagttacagatctatttaataaaaaataaaagaataaaaaaccactgt
gaaacacttgtatttgtcccagaagcaaaaaacacttaacaagacttgtt
ttgtgatggtggtagtggtggtgggttttgctgtagtaaataaaaattgt
tttagttcgtgaaccttataacatacttaacatataacatataatttaac
ttata
gaattcaggtccaagtcatttggccctaagtgaggattctggtttatctg
ggtgggttctctgtggtcatatgggtcctgaaagttaatggacggcagaa
gggaggaccaggtagatggcagcaggagggcaactcagtctagtatatct
ggctgtaggagtaggtgggtgagagctaaggactatacggcctctggtac
ctacaagagcacagtgatgcatccttccctgcacactccagaaggcacat
ggactgcttagccttttgattttaaccccataacattagttttggtcttt
tactttctacatatggaagaacaactctgtattgtttaagcaattaagcc
tatggtaattttgccaaagtagtggtaggagactaatacagtaattaaat
aatgccatagttttgcataaacacatggttttaagaagtgatagtgtgaa
tagcagtggggacatttaattgcattgggtagagaattcaagatgaaata
cacaagctttatattacatgctcattatttactcttattttataatgagc
ttggttagaaacaatgtttgaattagtgctttagtttcaagagatgcctt
atttgtaaacatggtaaatagtcaagaaagaatttcatttatagcagaag
aggtgttttaaaaatatttttaaattattttttagacaggcctgaaagta
accatctagctaggctggtcttaggttcatgtaattgttgtgccttggcc
ttccaagcataagcctccacacctcactaacatcggagattgttctttgg
ggaggtagaggataggttgagagtgccattataaattcctttacactaag
gaataaatactaagtggactggctagatctcacattcctgctctcactta
atgtactccacttctacatgacattgtagcagtttcttctacgtttctga
gactgctatctgtgtatctctcttatgcatcttgttatactgcagtgtct
ttttctctcttctgctatctgcacaagactgacaactgcacagcatcata
gacaatcattgcttaaaggtctccaactccacctcagctcgactgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_105624457_105624917
seq2: B6Ng01-111O11.b_50_510 (reverse)

seq1  TATAAGTTAAATTATATGTTATATGTTAAGTATGTTATAAGGTTTAGGAA  50
      |||||||||||||||||||||||||||||||||||||||||||| | |||
seq2  TATAAGTTAAATTATATGTTATATGTTAAGTATGTTATAAGGTTCACGAA  50

seq1  CTCTGTTAATTTTTATTTATTACAGCAAAACCCACCACCACTACCACCAT  100
      ||     |||||||||||| ||||||||||||||||||||||||||||||
seq2  CTAAAACAATTTTTATTTACTACAGCAAAACCCACCACCACTACCACCAT  100

seq1  CACAAAACAAGTCTTGTTAAGTGTTTTTTGCTTCTGGGACAAATACAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAACAAGTCTTGTTAAGTGTTTTTTGCTTCTGGGACAAATACAAGT  150

seq1  GTTTCACAGTGGTTTTTTATTCTTTTATTTTTTATTAAATAGATCTGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACAGTGGTTTTTTATTCTTTTATTTTTTATTAAATAGATCTGTAA  200

seq1  CTATCATGCTCCACTGTTTTACCAGTGAGTAAATGTATAGTTCAGAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATGCTCCACTGTTTTACCAGTGAGTAAATGTATAGTTCAGAGAGT  250

seq1  TTAAGCAACTTATCTTGTCCAAAGTCAGAAAGGCCAAAAGTACCAGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAACTTATCTTGTCCAAAGTCAGAAAGGCCAAAAGTACCAGCAGG  300

seq1  GACAGATCAACCTGTCTCTTATTCCAAAGACTGATCCCTTAACTATGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATCAACCTGTCTCTTATTCCAAAGACTGATCCCTTAACTATGGTT  350

seq1  TGCTGTGTCCCAACTGGTACAGTATAATTCTTTGGAAGAATGTATTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTCCCAACTGGTACAGTATAATTCTTTGGAAGAATGTATTTTTC  400

seq1  AATGTAATAATCAGTCACTCCATAGCTCTAGCACATAGTCAGAAAGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATAATCAGTCACTCCATAGCTCTAGCACATAGTCAGAAAGCATG  450

seq1  TCAAAGAATTC  461
      |||||||||||
seq2  TCAAAGAATTC  461

seq1: chr2_105591810_105592920
seq2: B6Ng01-111O11.g_70_1166

seq1  GAATTCAGGTCCAAGTCATTTGGCCCTAAGTGAGGATTCTGGTTTATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCCAAGTCATTTGGCCCTAAGTGAGGATTCTGGTTTATCTG  50

seq1  GGTGGGTTCTCTGTGGTCATATGGGTCCTGAAAGTTAATGGACGGCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTTCTCTGTGGTCATATGGGTCCTGAAAGTTAATGGACGGCAGAA  100

seq1  GGGAGGACCAGGTAGATGGCAGCAGGAGGGCAACTCAGTCTAGTATATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGACCAGGTAGATGGCAGCAGGAGGGCAACTCAGTCTAGTATATCT  150

seq1  GGCTGTAGGAGTAGGTGGGTGAGAGCTAAGGACTATACGGCCTCTGGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTAGGAGTAGGTGGGTGAGAGCTAAGGACTATACGGCCTCTGGTAC  200

seq1  CTACAAGAGCACAGTGATGCATCCTTCCCTGCACACTCCAGAAGGCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGAGCACAGTGATGCATCCTTCCCTGCACACTCCAGAAGGCACAT  250

seq1  GGACTGCTTAGCCTTTTGATTTTAACCCCATAACATTAGTTTTGGTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCTTAGCCTTTTGATTTTAACCCCATAACATTAGTTTTGGTCTTT  300

seq1  TACTTTCTACATATGGAAGAACAACTCTGTATTGTTTAAGCAATTAAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTACATATGGAAGAACAACTCTGTATTGTTTAAGCAATTAAGCC  350

seq1  TATGGTAATTTTGCCAAAGTAGTGGTAGGAGACTAATACAGTAATTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTAATTTTGCCAAAGTAGTGGTAGGAGACTAATACAGTAATTAAAT  400

seq1  AATGCCATAGTTTTGCATAAACACATGGTTTTAAGAAGTGATAGTGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCATAGTTTTGCATAAACACATGGTTTTAAGAAGTGATAGTGTGAA  450

seq1  TAGCAGTGGGGACATTTAATTGCATTGGGTAGAGAATTCAAGATGAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTGGGGACATTTAATTGCATTGGGTAGAGAATTCAAGATGAAATA  500

seq1  CACAAGCTTTATATTACATGCTCATTATTTACTCTTATTTTATAATGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCTTTATATTACATGCTCATTATTTACTCTTATTTTATAATGAGC  550

seq1  TTGGTTAGAAACAATGTTTGAATTAGTGCTTTAGTTTCAAGAGATGCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAGAAACAATGTTTGAATTAGTGCTTTAGTTTCAAGAGATGCCTT  600

seq1  ATTTGTAAACATGGTAAATAGTCAAGAAAGAATTTCATTTATAGCAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAAACATGGTAAATAGTCAAGAAAGAATTTCATTTATAGCAGAAG  650

seq1  AGGTGTTTTAAAAATATTTTTAAATTATTTTTTAGACAGGCCTGAAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTTTAAAAATATTTTTAAATTATTTTTTAGACAGGCCTGAAAGTA  700

seq1  ACCATCTAGCTAGGCTGGTCTTAGGTTCATGTAATTGTTGTGCCTTGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTAGCTAGGCTGGTCTTAGGTTCATGTAATTGTTGTGCCTTGGCC  750

seq1  TTCCAAGCATAAGCCTCCACACCTCACTAACATCGGAGATTGTTCTTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGCATAAGCCTCCACACCTCACTAACATCGGAGATTGTTCTTTGG  800

seq1  GAAGGTAGAGGATAGGTTGAGAGTGCCATTATAAATTCCTTTACACTAAG  850
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAGAGGATAGGTTGAGAGTGCCATTATAAATTCCTTTACACTAAG  850

seq1  GAATAAATACTAAGTGGACTGGCTAGATCTCACATTCCTGCATCTCACTT  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAATAAATACTAAGTGGACTGGCTAGATCTCACATTCCTGC-TCTCACTT  899

seq1  AATGTACT-CACTTCTACATGACATTGTAGCAGTTTCTTCTACGTTTCTG  949
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACTCCACTTCTACATGACATTGTAGCAGTTTCTTCTACGTTTCTG  949

seq1  CAGACTGCTAATCTGTGTATCTCTCCTTATGCCATCTCTGTTATACCTGC  999
       |||||||| |||||||||||||| |||||| ||||| ||||||| ||||
seq2  -AGACTGCT-ATCTGTGTATCTCT-CTTATG-CATCT-TGTTATA-CTGC  993

seq1  AGTGTTCTTTTTCTTCTCTTCCTTGCTTAATCTGCAC-AGACTGACAAAC  1048
      |||| |||||||| |||||||  ||||  |||||||| |||||||| |||
seq2  AGTG-TCTTTTTC-TCTCTTC--TGCT--ATCTGCACAAGACTGAC-AAC  1036

seq1  TGCACAGCACTCATAGACCATCCATTGCCTTACAGTCTCCAACTCCACCT  1098
      ||||||||| |||||||| || |||||| | |  ||||||||||||||||
seq2  TGCACAGCA-TCATAGACAAT-CATTGCTTAAAGGTCTCCAACTCCACCT  1084

seq1  CAGCTCGACTGTT  1111
      |||||||||||||
seq2  CAGCTCGACTGTT  1097