BAC Information

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BAC

Clone NameB6Ng01-112B10
Chromosome2 (Build37)
Map Location 29,868,683 - 29,869,655
singlet/doubletsinglet
Overlap geneSpna2
Upstream gene1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, LOC665532
Downstream geneWdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112B10.bB6Ng01-112B10.g
ACCDH918250DH918251
length961613
definitionDH918250|Mus musculus domesticus DNA, BAC clone: B6Ng01-112B10, 5' end.DH918251|Mus musculus domesticus DNA, BAC clone: B6Ng01-112B10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtaactgatatgaacatgtcccatctactagagcctcactctg
ccatcatacttccccaggaagatcggcgcatgggaacagcacaggggcag
ctccattagacaggttatagcttcgacaaagtctagcaagggagcagctt
tcaaatggctctactgacccagtggactttttctaagctttatcatggaa
cacacagttttataggtgtactcccttaaagagtcccatttaacagctct
actcagtgacaaggcacttcagaacaagtgtcctaggagccccttacctg
gatgttggtggggtccttgtatgactcatcactggctgtctgtaacttct
cactgatccaggcttcaatctcatccacatcccggctgaactgctgaagt
gtttgagattctccaagttttgaccttttttcaatcatctgggcttttag
gcggcgccacctgagtgtgaagaccaaatatgagtgttctttccaataag
agaagaagctggaataggtatggcttctcacatgtggacattcatcctct
cagagctggggactgtcaccatcgcaggacacctaccggtcaaggacctc
attgcgtcggtttgcaatgtctcccttggcatagtggtcaacggcaatga
gctggtcggcaaaggcctgcagggcagctatcttttcttcctaaaggcaa
caggcaaagaggtcatggtgggctgaagaaagcctgtcagcctgataagt
ttcagaggagatagttacactttgagtgacgaactaactggtagcaggat
cggaacacatcacactttagaagccagcttgatatcatcattactagaga
agggtttaattccagatgactaagggcctactgaggtgtgcatggaggga
cacatcagattctaccaaattagaatcgtaaatgaatacgccctgttttc
acaaatggttt
gaattcaccctgttctgcttgctctctctctctctctctctctctctctc
tctctctctctatatctttacttgtctgtgtgttttcagagaggaacttt
tagcagcagaaaaccagttggtgcgctcttcctgtggaagaccagctttt
ccaatccaagccttctcagttgcctgttactctttgtgtagtgctggcac
cagatggactatttccaatccagtttggcatgtttgttggtgttatactt
gttcagtccatgatttgggtggccatgttgattagactttgcaggtagct
tgtgatgtgaccagggaacaaaatctcacagctaactctatgatcctttg
gatcttcagatcatttacctcctcttctacaatgttctctgagctttagg
tgtgggagtgtgttgttagatgtatctgttgcaattggtctctacaactc
tgccttttgattggttgtggttttctatagtaatctccatctattgtaga
gagaagtttccttaatgtgggatgaaaattacatttatctctgatcttaa
tggcacatgcttatagattgctgttaggaactatatttggttatgtaatt
ctgtggttgtaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_29868683_29869655
seq2: B6Ng01-112B10.b_43_1003 (reverse)

seq1  AAACCATTTTGTTGAAAACAGGGCAGTGATCATTTTATGATTCTAATTTG  50
      |||||||||   |||||||||||| ||  ||| |||| ||||||||||||
seq2  AAACCATTT--GTGAAAACAGGGC-GTATTCA-TTTACGATTCTAATTTG  46

seq1  TTAGACATCTGCTGGTGTCCCTACACTTGCACACCTCAGTATGACCTTAA  100
       |||| ||||| | |||||||| ||  |||||||||||||| | |||| |
seq2  GTAGA-ATCTGAT-GTGTCCCTCCA--TGCACACCTCAGTAGGCCCTT-A  91

seq1  GTCCTCTTGAATTAAACCCTACTCTAGTAATGATGATAATCAAGCTGGCT  150
      ||| ||| |||||||||||| |||||||||||||||| ||||||||||||
seq2  GTCATCTGGAATTAAACCCTTCTCTAGTAATGATGAT-ATCAAGCTGGCT  140

seq1  TCTAAAGTGTCGATGTGTTCCGATCCTGCTACCAGTTAGTTTCGTCACTC  200
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  TCTAAAGTGT-GATGTGTTCCGATCCTGCTACCAGTTAG-TTCGTCACTC  188

seq1  AAAGTGTAACTATCTCCTCTGAAAACTATCAGGCTGACAGGCTTTCTTCA  250
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  AAAGTGTAACTATCTCCTCTGAAACTTATCAGGCTGACAGGCTTTCTTCA  238

seq1  GCCCACCCTGACCTCTTTGCCTGTTGCCTTTAGGAAGAAAAGATAGCTGC  300
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCATGACCTCTTTGCCTGTTGCCTTTAGGAAGAAAAGATAGCTGC  288

seq1  CCTGCAGGCCTTTGCCGACCAGCTCATTGCCGTTGACCACTATGCCAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGGCCTTTGCCGACCAGCTCATTGCCGTTGACCACTATGCCAAGG  338

seq1  GAGACATTGCAAACCGACGCAATGAGGTCCTTGACCGGTAGGTGTCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATTGCAAACCGACGCAATGAGGTCCTTGACCGGTAGGTGTCCTGC  388

seq1  GATGGTGACAGTCCCCAGCTCTGAGAGGATGAATGTCCACATGTGAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGACAGTCCCCAGCTCTGAGAGGATGAATGTCCACATGTGAGAAG  438

seq1  CCATACCTATTCCAGCTTCTTCTCTTATTGGAAAGAACACTCATATTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCTATTCCAGCTTCTTCTCTTATTGGAAAGAACACTCATATTTGG  488

seq1  TCTTCACACTCAGGTGGCGCCGCCTAAAAGCCCAGATGATTGAAAAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACACTCAGGTGGCGCCGCCTAAAAGCCCAGATGATTGAAAAAAGG  538

seq1  TCAAAACTTGGAGAATCTCAAACACTTCAGCAGTTCAGCCGGGATGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACTTGGAGAATCTCAAACACTTCAGCAGTTCAGCCGGGATGTGGA  588

seq1  TGAGATTGAAGCCTGGATCAGTGAGAAGTTACAGACAGCCAGTGATGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTGAAGCCTGGATCAGTGAGAAGTTACAGACAGCCAGTGATGAGT  638

seq1  CATACAAGGACCCCACCAACATCCAGGTAAGGGGCTCCTAGGACACTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAGGACCCCACCAACATCCAGGTAAGGGGCTCCTAGGACACTTGT  688

seq1  TCTGAAGTGCCTTGTCACTGAGTAGAGCTGTTAAATGGGACTCTTTAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTGCCTTGTCACTGAGTAGAGCTGTTAAATGGGACTCTTTAAGG  738

seq1  GAGTACACCTATAAAACTGTGTGTTCCATGATAAAGCTTAGAAAAAGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACACCTATAAAACTGTGTGTTCCATGATAAAGCTTAGAAAAAGTCC  788

seq1  ACTGGGTCAGTAGAGCCATTTGAAAGCTGCTCCCTTGCTAGACTTTGTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTCAGTAGAGCCATTTGAAAGCTGCTCCCTTGCTAGACTTTGTCG  838

seq1  AAGCTATAACCTGTCTAATGGAGCTGCCCCTGTGCTGTTCCCATGCGCCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATAACCTGTCTAATGGAGCTGCCCCTGTGCTGTTCCCATGCGCCG  888

seq1  ATCTTCCTGGGGAAGTATGATGGCAGAGTGAGGCTCTAGTAGCTGAGACA  950
      |||||||||||||||||||||||||||||||||||||||||| || ||||
seq2  ATCTTCCTGGGGAAGTATGATGGCAGAGTGAGGCTCTAGTAGATGGGACA  938

seq1  TGTTCATATCAGTTACTGAATTC  973
      |||||||||||||||||||||||
seq2  TGTTCATATCAGTTACTGAATTC  961